|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064258 ID=TCONS_00064258|Name=TCONS_00064258|organism=Clytia hemisphaerica|type=transcript|length=1769bp
GATAAACTTAAAAATACTTATTCATATAACGGTTTCAAGCCAAAGAATAT
CTTTCAGTGAGTTTGGTTGCAATAAAAATAGTTAATTTACCAATAGAAGT
CAAAAACATGgaaattgaactttttaaacATATTTGTTCTGTGAaagcaa
caaaataaataaaaacataatGCAGGATACTGACAGGAAAACACTTCAAA
CTAAACCATGTTGATTTTACTCGACAGAAGAGATCAGGTTACTAGTATGT
GATGCCGCAATTCCTCATTATGACATCATAAGAAACAAGATACCTACTTT
GAACctgcttttttccaaaaaaaacagtGACATCATAAGAAGCATGAATT
AATACCTCCTTTGAACTtgtctttcaaaaaatttcaaattaaggaaaatg
aaaaatgcatAGGAAATTATTTCGTTATATCGAAAATACTGGAAGATGCC
TTAAATCCTTATGTAAATTTTGTGAGATGTGTTTAAAAGGaatctttaaa
attaaaaagtaaaataacgTGTTTTTCAAGACTTCACAAACaagaaatat
ttacatttttgatAGTCGTGCAAGAAAActaataataaatttttttttct
aattttttgaaaattttaaaaagaaatttttatacaACTAGTGATAACCT
AGATAAAAACATTCTAAATCCCAAAAATGAATGAATAATATAAACCTTTA
TTTAAGCAAGAAGTGAAATACTGTCAAAATATGTGTCTTTTCTATATTCA
GTGTATGATTATAATGCTCTTTTATACAGTATGTACATAAATTTACTTCC
CAAATTTTCCCAGAgattaattttagaaaatatctCTGGTGATCTCCCAA
AAAATGCAATGTAATATTGATTACAAAATAAGCAGGGTTGTAGTTCAAAG
AAGTGAAATGAATAGTTTTCAGCTTGTACAATTCACAAATCTCGGATATG
ATGCCAAATCAAAATGGTACATTTCTCAGGATTGATGATAAAATAGCAGA
AATTTTGCGCATGTGATTGATTTCCTGGGAATATCATACCACCATTCTCA
TCAAACATTTCCACTTTCAAAACAGTGGATAAAATACTGAGATTTTTAGT
TTTCGGATCTTTCACCACCCTCATGAGATCCTTGTAAACATACTTAGTTG
CATCAATATATGGTTGGACATCATCCTCATACTGGTTACAATAACCACCC
AAAACAATATGGCGAAAGATAGCATAAATAaactcttctttttcttcatc
cgTAAACAAACTAGCATAATCTGATTCATCAGTGAGCATCATCTTTCGCA
ACTCGTCAGAAATCAAAACATCATCAATCATTTCATCAAAACATTTCTTG
ATTGTACCACATGATCTTACAACAGAATTTTTGAATAGACGATCAAAAAA
CCCCATATTGGTGACTGTACTGAGTAGATGTTTGACTTTGACATACTTCG
CAGGTTGCATATGACCAAGAGAGCATTGGGAtcctttcaaaaatgttttg
aaggCAATTTTGGTGACAGCATCATCGAAAAAAGCTTTAACAAAATCTTC
TTTAGATTCCAAGTCAAAATAATTATTGTACGAAAAATTTTGCACATTCA
TTTGTACCATGCCCCATTTCTCAAAATTCTCTCTTTGTGATTTCACAGAG
AAACTTGGTAGCTCCTTATGTGGTTGGGCAGTAAATGAAAACATTATCTT
GATTATTATTACACATTTATCTAAATTAGCAGTTTTTGGTTTACCTAAAT
AAGAATATAATATATAGAT Run BLAST on NCBI protein sequence of TCONS_00064258-protein >TCONS_00064258-protein ID=TCONS_00064258-protein|Name=TCONS_00064258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
IYILYSYLGKPKTANLDKCVIIIKIMFSFTAQPHKELPSFSVKSQRENFE
KWGMVQMNVQNFSYNNYFDLESKEDFVKAFFDDAVTKIAFKTFLKGSQCS
LGHMQPAKYVKVKHLLSTVTNMGFFDRLFKNSVVRSCGTIKKCFDEMIDD
VLISDELRKMMLTDESDYASLFTDEEKEEFIYAIFRHIVLGGYCNQYEDD
VQPYIDATKYVYKDLMRVVKDPKTKNLSILSTVLKVEMFDENGGMIFPGN
QSHAQNFCYFIINPEKCTILIWHHIRDL Run BLAST on NCBI transcript from alignment at scaffold_41:194576..196344 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064258 ID=TCONS_00064258|Name=TCONS_00064258|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at scaffold_41:194576..196344 (Clytia hemisphaerica)
ATCTATATATTATATTCTTATTTAGGTAAACCAAAAACTGCTAATTTAGA
TAAATGTGTAATAATAATCAAGATAATGTTTTCATTTACTGCCCAACCAC
ATAAGGAGCTACCAAGTTTCTCTGTGAAATCACAAAGAGAGAATTTTGAG
AAATGGGGCATGGTACAAATGAATGTGCAAAATTTTTCGTACAATAATTA
TTTTGACTTGGAATCTAAAGAAGATTTTGTTAAAGCTTTTTTCGATGATG
CTGTCACCAAAATTGccttcaaaacatttttgaaaggaTCCCAATGCTCT
CTTGGTCATATGCAACCTGCGAAGTATGTCAAAGTCAAACATCTACTCAG
TACAGTCACCAATATGGGGTTTTTTGATCGTCTATTCAAAAATTCTGTTG
TAAGATCATGTGGTACAATCAAGAAATGTTTTGATGAAATGATTGATGAT
GTTTTGATTTCTGACGAGTTGCGAAAGATGATGCTCACTGATGAATCAGA
TTATGCTAGTTTGTTTAcggatgaagaaaaagaagagttTATTTATGCTA
TCTTTCGCCATATTGTTTTGGGTGGTTATTGTAACCAGTATGAGGATGAT
GTCCAACCATATATTGATGCAACTAAGTATGTTTACAAGGATCTCATGAG
GGTGGTGAAAGATCCGAAAACTAAAAATCTCAGTATTTTATCCACTGTTT
TGAAAGTGGAAATGTTTGATGAGAATGGTGGTATGATATTCCCAGGAAAT
CAATCACATGCGCAAAATTTCTGCTATTTTATCATCAATCCTGAGAAATG
TACCATTTTGATTTGGCATCATATCCGAGATTTGTGAATTGTACAAGCTG
AAAACTATTCATTTCACTTCTTTGAACTACAACCCTGCTTATTTTGTAAT
CAATATTACATTGCATTTTTTGGGAGATCACCAGagatattttctaaaat
taatcTCTGGGAAAATTTGGGAAGTAAATTTATGTACATACTGTATAAAA
GAGCATTATAATCATACACTGAATATAGAAAAGACACATATTTTGACAGT
ATTTCACTTCTTGCTTAAATAAAGGTTTATATTATTCATTCATTTTTGGG
ATTTAGAATGTTTTTATCTAGGTTATCACTAGTtgtataaaaatttcttt
ttaaaattttcaaaaaattagaaaaaaaaatttattattagTTTTCTTGC
ACGACTatcaaaaatgtaaatatttcttGTTTGTGAAGTCTTGAAAAACA
cgttattttactttttaattttaaagattCCTTTTAAACACATCTCACAA
AATTTACATAAGGATTTAAGGCATCTTCCAGTATTTTCGATATAACGAAA
TAATTTCCTatgcatttttcattttccttaatttgaaattttttgaaaga
caAGTTCAAAGGAGGTATTAATTCATGCTTCTTATGATGTCactgttttt
tttggaaaaaagcagGTTCAAAGTAGGTATCTTGTTTCTTATGATGTCAT
AATGAGGAATTGCGGCATCACATACTAGTAACCTGATCTCTTCTGTCGAG
TAAAATCAACATGGTTTAGTTTGAAGTGTTTTCCTGTCAGTATCCTGCat
tatgtttttatttattttgttgcttTCACAGAACAAATATgtttaaaaag
ttcaatttcCATGTTTTTGACTTCTATTGGTAAATTAACTATTTTTATTG
CAACCAAACTCACTGAAAGATATTCTTTGGCTTGAAACCGTTATATGAAT
AAGTATTTTTAAGTTTATC Coding sequence (CDS) from alignment at scaffold_41:194576..196344 >TCONS_00064258 ID=TCONS_00064258|Name=TCONS_00064258|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_41:194576..196344 (Clytia hemisphaerica)
ATCTATATATTATATTCTTATTTAGGTAAACCAAAAACTGCTAATTTAGA
TAAATGTGTAATAATAATCAAGATAATGTTTTCATTTACTGCCCAACCAC
ATAAGGAGCTACCAAGTTTCTCTGTGAAATCACAAAGAGAGAATTTTGAG
AAATGGGGCATGGTACAAATGAATGTGCAAAATTTTTCGTACAATAATTA
TTTTGACTTGGAATCTAAAGAAGATTTTGTTAAAGCTTTTTTCGATGATG
CTGTCACCAAAATTGccttcaaaacatttttgaaaggaTCCCAATGCTCT
CTTGGTCATATGCAACCTGCGAAGTATGTCAAAGTCAAACATCTACTCAG
TACAGTCACCAATATGGGGTTTTTTGATCGTCTATTCAAAAATTCTGTTG
TAAGATCATGTGGTACAATCAAGAAATGTTTTGATGAAATGATTGATGAT
GTTTTGATTTCTGACGAGTTGCGAAAGATGATGCTCACTGATGAATCAGA
TTATGCTAGTTTGTTTAcggatgaagaaaaagaagagttTATTTATGCTA
TCTTTCGCCATATTGTTTTGGGTGGTTATTGTAACCAGTATGAGGATGAT
GTCCAACCATATATTGATGCAACTAAGTATGTTTACAAGGATCTCATGAG
GGTGGTGAAAGATCCGAAAACTAAAAATCTCAGTATTTTATCCACTGTTT
TGAAAGTGGAAATGTTTGATGAGAATGGTGGTATGATATTCCCAGGAAAT
CAATCACATGCGCAAAATTTCTGCTATTTTATCATCAATCCTGAGAAATG
TACCATTTTGATTTGGCATCATATCCGAGATTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064258-exon-scaffold_41-1491911889:194576..196344 | TCONS_00064258-exon-scaffold_41-1491911889:194576..196344 | Clytia hemisphaerica | exon |
| TCONS_00064258-exon-scaffold_41-1510915933:194576..196344 | TCONS_00064258-exon-scaffold_41-1510915933:194576..196344 | Clytia hemisphaerica | exon |
| TCONS_00064258-exon-scaffold_41-1575043694:194576..196344 | TCONS_00064258-exon-scaffold_41-1575043694:194576..196344 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:194576..196344 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029416 | DUF4498 |
Blast
BLAST of TCONS_00064258 vs. Swiss-Prot (Human)
Match: CK070 (Uncharacterized protein C11orf70 OS=Homo sapiens GN=C11orf70 PE=2 SV=3) HSP 1 Score: 169.474 bits (428), Expect = 1.286e-47 Identity = 89/249 (35.74%), Postives = 141/249 (56.63%), Query Frame = -1
Query: 948 FTAQPHKELPSFSVKSQRENFEKWGMV-QMNVQNFSYNNYFDLESKEDFVKAFFDD--AVTKIAFKTFLKGSQCSLGHMQPAKYVKVKHLLSTVTNMGFFDRLFKNSVVRSCGTIKKCFDEMIDDVLISDELRKMMLTDESDYASLFTDEEKEEFIYAIFRHIVLGGYCNQYEDDVQPYIDATKYVYKDLMRVVKDPKTKNLSILSTVLKVEMFDENGGMIFPGNQSHAQNFCYFIINPEKCTILIWHH 1685
F P K S S K +W M+ ++ Q F ++ F K+DFV AFF D + + + G LG K ++ ++ T +M FF RL+ +VR G I KC D D LISDELR+++L ++S+ +F+ ++EEF++ +F+H+ LGG QYED + PY++ TK +YKDL+ V K+P+TK + I S+V KV +D + GM +P ++H Q F YFI++P + + + +H
Sbjct: 14 FRFLPQKTFQSLSSKEITSRLRQWSMLGRIKAQAFGFDQTFQSYRKDDFVMAFFKDPNVIPNLKLLSDSSGQWIILG--TEVKKIEAINVPCTQLSMSFFHRLYDEDIVRDSGHIVKCLDSFCDPFLISDELRRVLLVEDSEKYEIFSQPDREEFLFCLFKHLCLGGALCQYEDVISPYLETTKLIYKDLVSVRKNPQTKKIQITSSVFKVSAYD-SAGMCYPSAKNHEQTFSYFIVDPIRRHLHVLYH 259
The following BLAST results are available for this feature:
|
