TCONS_00064255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064255
Unique NameTCONS_00064255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064255 ID=TCONS_00064255|Name=TCONS_00064255|organism=Clytia hemisphaerica|type=transcript|length=420bp
TCTTTTATGAATATTCAGGGTTTATGTCTCCAGACCACTCAATCATCAGT
TCCTCTACTAGAATCAATTCTTCATTCTGAGAACCACATTTTTATGGGCC
TAACTGAGACATGGCTATCATCTTCGCACAAGAAAGCAGAGCTTGAAATT
GAGGGATACGAGCTTTTTCGTAAGGATAGAAATCGCATCAAATCCAAATA
TGGAAGACATAGCGGAGGTGTCGCATTTTAAGCAACGTATCTCCAATGTT
TGAGCCAAtacttgaattttcaaatggTGTCAATGAAGCTCTACTACTTC
ATTCAAAAAACCTCAACCTTATTCTTGGTGTCATTTATAGACAGCCAACA
AATATTCTGCACAAATCAGCGGCTCCGGAATTCTTGGACCTTATCTCAGC
AATGCAGGACATCATCGAAN
Run BLAST on NCBI

transcript from alignment at scaffold_41:49621..50040

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064255 ID=TCONS_00064255|Name=TCONS_00064255|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at scaffold_41:49621..50040 (Clytia hemisphaerica)
NTTCGATGATGTCCTGCATTGCTGAGATAAGGTCCAAGAATTCCGGAGCC
GCTGATTTGTGCAGAATATTTGTTGGCTGTCTATAAATGACACCAAGAAT
AAGGTTGAGGTTTTTTGAATGAAGTAGTAGAGCTTCATTGACAccatttg
aaaattcaagtaTTGGCTCAAACATTGGAGATACGTTGCTTAAAATGCGA
CACCTCCGCTATGTCTTCCATATTTGGATTTGATGCGATTTCTATCCTTA
CGAAAAAGCTCGTATCCCTCAATTTCAAGCTCTGCTTTCTTGTGCGAAGA
TGATAGCCATGTCTCAGTTAGGCCCATAAAAATGTGGTTCTCAGAATGAA
GAATTGATTCTAGTAGAGGAACTGATGATTGAGTGGTCTGGAGACATAAA
CCCTGAATATTCATAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040275XLOC_040275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064255-exon-scaffold_41-1491911889:49621..50040TCONS_00064255-exon-scaffold_41-1491911889:49621..50040Clytia hemisphaericaexon
TCONS_00064255-exon-scaffold_41-1510915933:49621..50040TCONS_00064255-exon-scaffold_41-1510915933:49621..50040Clytia hemisphaericaexon
TCONS_00064255-exon-scaffold_41-1575043694:49621..50040TCONS_00064255-exon-scaffold_41-1575043694:49621..50040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:49621..50040 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.672259	1.55191	0.820265	3.7229	1.7487	2.76151	3.62905	3.76635	3.75433	4.55972	3.94978	1.68138	3.11607	1.58171	1.95337	2.72241	2.03289	1.76555	2.9329	1.84018	0	0.948413	1.30085	1.03564	3.30976	1.58084	1.00923	0.663176	1.11728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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