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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064249 ID=TCONS_00064249|Name=TCONS_00064249|organism=Clytia hemisphaerica|type=transcript|length=786bp
CAAAGTCttcttcccagctggcacaacaGTGTATATCCAGcagacacaca
acgttgtttcaaggTTTATCTGACGTTCATaatgtccatataacgttaga
tgaacgttgaaacaacgttgtgtgccagctgggctgtGAAAAAACCTTCt
agctaaaaaaaatttcaaacatcaaTCAGCAAACATTCAGTAAACTCACA
AGCCCAGAGCTGCGTCAATGAAAAATTGTAGTTCGAGGCTTCAAAGCTTA
GATTTAGAAGAAGTGAACAATGGGTTTGGAGCAAAAGAATAAAATGACAA
CAAACGAGAAAATCAGCATTACCATTGAAAAGAAAGCAAACGCCAGTGAA
GAAGAAAACATTGAAGaactttcagaaaatcaactcCGACAAATTATTGC
TCGTCAGAAACGTCGTTCTTCTTACATCGTTGAAGAAATTGTCAATTATT
GTATTCCATTGGTCAAAGTTGAATTTGCTGGCCAATCGAACACAACTAAA
AGTGACGAAACTGATGGAAGTGAAACCGTGTTAAATCTTGGTGTATATCT
CTCCTTATTGGATCGTGTCATTCGTAAATATAAAGATCCATTACAATTTA
CCATCAAAGACGAAGAATATTGTTCAGTGTTACGTTTGGTGGCCACCAAG
AGATgtttaaagaaagaaacgaCTGAAGAATGTTATGAAAGATTAATGAA
AGATAGTgaagaatttgagaaaatataCCATGAAAGAAAAGtTCTTTCAG
AGgttttgaaaaacgaagatttttgggGCACACGAC Run BLAST on NCBI transcript from alignment at scaffold_41:815923..819188- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064249 ID=TCONS_00064249|Name=TCONS_00064249|organism=Clytia hemisphaerica|type=transcript|length=3266bp|location=Sequence derived from alignment at scaffold_41:815923..819188- (Clytia hemisphaerica)
CAAAGTCTTCTTCCCAGCTGGCACAACAGTGTATATCCAGCAGACACACA
ACGTTGTTTCAAGGTTTATCTGACGTTCATAATGTCCATATAACGTTAGA
TGAACGTTGAAACAACGTTGTGTGCCAGCTGGGCTGTGAAAAAACCTTCT
AGCTAAAAAAAATTTCAAACATCAATCAGCAAACATTCAGTAAACTCACA
AGCCCAGAGCTGCGTCAATGAAAAATTGTAGTTCGAGGCTTCAAAGCTTA
GATTTAGAAGAAGTGAACAATGGGTTTGGAGCAAAAGAATAAAATGACAA
CAAACGAGAAAATCAGCATTACCATTGAAAAGAAAGCAAACGCCAGTGAA
GAAGAAAACATTGAAGAACTTTCAGAAAATCAACTCCGACAAATTATTGC
TCGTCAGAAACGTCGTTCTTCTTACATCGTTGAAGAAATTGTCAATTATT
GTATTCCATTGGTCAAAGTTGAATTTGCTGGCCAATCGAACACAACTAAA
GTAAGTACTCTTAGGTTCCAAATAAACGGGGGAGGGAAAAATGTTCAAAA
TTTTAATAAGCAGGGGGGGGCTAATTGCCGGGGGGTTAGAAATTATGATT
ACGAAAACCCAAATATAAGGTAAATATAGGCTAAAATCAGGCTATTTAGA
GCAGAATGAGGGACCTCTTTGAAAGCTGAAAAAATTCTTAAAAACTAAAA
AGGTCCGGGTGGGGTTGGAAAATTTTTTGATGAATTAACAGGGGGGGGGG
GGGCGTTTATTTGGAACCTAAGAGTATAGTAAATTTACCACCACTTTTCG
CTCTAGACCCCGACTCTACAATCAGTGCCATAACATATTGGCACTTTTGG
CTAATTTACCATTTTTCGAAAATTGAAGTTCGAACGAGAATGTCAATTTT
GGGCCTTTAACTTGATTGCAACGATTATTTCGATCTGGGAGGGATGTATT
GGTTTCTAGGCTAGATTTCAAGCCCTACTGGACCATTTTTGAACTTTTGG
ATCCTGGACTTATATTCATTACGTAATGTTTTATACGGAATCACGCAAAA
TAGCCCAGAGGTCTTCCACTAGTATTATTCAAATTCAAATTGACTGGCAA
ACACCCAGTCTTTCCTGGTTGAGTCAATTAAACCCAAAACCATTTATACC
AGTCTAAAGCTCTCAAAATGCTATAGAGGACTTTTAAGTGGATATTAACC
TATTTCAAGAAAATTAACGCCAATTTTGCGTTTTAACGTCTTTTCCAGTC
GATGATTTACTTAAGGAAACACTCTTGCAAAAAACTTTTTAAATACTTCA
TTCTTTGAAATAATGGACCAGGTTTGGCTGTGTCGCATAAAAAATGCCAC
GGATCCTAAAGGTTTGTCCCTTACTAAATGCATTANGCATAAAAAATGCC
ACGGATCCTAAAGGTTTGTCCCTTACTAAATGCATTTAATTATTGACATC
ATTATCTTTTGCTCCTTACAACAACAGAGTGACGAAACTGATGGAAGTGA
AACCGTGTTAAATCTTGGTGTATATCTCTCCTTATTGGATCGTGTCATTC
GTAAATATAAAGATCCATTACAATTTACCATCAAAGACGAAGAATATTGT
TCAGTGTTACGTTTGGTGGCCACCAAGAGATGTTTAAAGAAAGAAACGAC
TGAAGAATGTTATGAAAGATTAATGAAAGATAGTGAAGAATTTGAGAAAA
TATACCATGAAAGAAAAGGTAAGATACAATGTGTCGCAAAAAAGAGGACA
GATTTTTAAATAAAGTAAAATCCCTATAACTTATGCCAAATTTTATGACA
TTCCAATCTCAAAAAACTATTCAATCATCTTGGGTATTGAATAGCTATTG
ATTCAACATACCATAAAACCACTTTTTCGACCGTAGCCGCCAATTGCCGC
ACGGACATTCTTTTGTCCGTTTTACCACCCTAAAACAGTTCCAGTCTTTT
TTCGCACCTATAGACAATAGAAGAAGGTGTCAAAAAAGGATTGGATCGAG
TTTAGGGGGATGATTATATAATTAAGTGGTACGCGTCTGACCGCATCAGC
GCCACTACAGTCGAAAAGGTGTTTTGTAATCTTACTTCAATCGTTCTAAC
CACAGTAACTGTGAGATGATGAGTTTTCAGGATTTTACATACAGTTGACG
CTCTCTAATTCGATTTTCAAGGGGAATCGGATTTTCATCGAATACGGGAG
CGTATCGAATAGTAGGAAGTCTCCCTAATCCGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAAGTCTCCCTAATCCGATAA
ACACGAGGTAAATATCGAATTATAGAGCTGAGAAAGAAAAATATAAGCGA
GACTCGATTGGTTTGAACGCGAATCAGGAAAAATGTCTAAGTTCTTGCTG
AAAATCTAAGTTCTTCGGAAGAAAACTTTCGATATCTGCCTGTTTTGAAA
AGTTTTCAGGAATCGAATTTCGAAATTATAATTCAAACGCAAAACAATCG
AAAATTTGAATTTCGAACTCCGTCCTAAAGGCCTTTTTACACGCTAGAAA
TCGAATAAGAGAGCGAAAAACCTGCAAGGGACTTCAAATTTTCATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AAATTTTCATCGAAAACGGGAGCTTATCGAATAATAGAATGTCGAATAGT
AGAGCGTAGTTTATGAGAGTTTCTTAAGGAAATTTGACGGTGACTTTCAA
TTGGATCGAAAACGGGAGCTAATCGAATAGTAGAACGTCGAATTAGAGAG
CGTCCACTGTACTTTATAAAAAAATTGTCCAACTCTTTTTGGGACAAACT
ATGCACTGTACATTAACTCGAACAAGGCTTTGAATATGATCTGTACGCTC
TGTAAAAACATTCTAAAGATCTGATGATGATGATGATGATATAAAAAAAT
GCTGAAAAAGAGAACGTCTTTAGGGTCTTGACGTTCTTGTCAAAGTCATA
AACGTATATTATATTTTTCAGTTCTTTCAGAGGTTTTGAAAAACGAAGAT
TTTTGGGGCACACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064249-exon-scaffold_41-1575043694:818689..819188 | TCONS_00064249-exon-scaffold_41-1575043694:818689..819188 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1575043694:817471..817711 | TCONS_00064249-exon-scaffold_41-1575043694:817471..817711 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1575043694:815923..815967 | TCONS_00064249-exon-scaffold_41-1575043694:815923..815967 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1510915933:818689..819188 | TCONS_00064249-exon-scaffold_41-1510915933:818689..819188 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1510915933:817471..817711 | TCONS_00064249-exon-scaffold_41-1510915933:817471..817711 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1510915933:815923..815967 | TCONS_00064249-exon-scaffold_41-1510915933:815923..815967 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1491911889:818689..819188 | TCONS_00064249-exon-scaffold_41-1491911889:818689..819188 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1491911889:817471..817711 | TCONS_00064249-exon-scaffold_41-1491911889:817471..817711 | Clytia hemisphaerica | exon |
| TCONS_00064249-exon-scaffold_41-1491911889:815923..815967 | TCONS_00064249-exon-scaffold_41-1491911889:815923..815967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:815923..819188 - |
Blast
The following BLAST results are available for this feature:
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