TCONS_00064238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064238
Unique NameTCONS_00064238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064238 ID=TCONS_00064238|Name=TCONS_00064238|organism=Clytia hemisphaerica|type=transcript|length=1246bp
CCGTCATCTTGATGTTCGCAAGTAATTTTTTCGACTATTACTAACAAAAT
ACCAAATATACTTGCATCACATCAGCATAATCATCTGGTAAAAAGATTAA
TGCAAAAGTTACATACAATATTGGATATAAAATCTATTTCTGTTTATGGT
TGGTTTGTTTCATCTGTGAAAGACAAATATTTGATTGAGGGAAGAGTTTG
AATCATTCAATACATGGCTCAGTTTGTTGTGTAATGGGAATTTTGTTATC
TAAAGTTTGGTACTCATTTTTTGGGAGCAAAGAACATAAGGTCATCATAG
TAGGCTTAGACAATGCTGGCAAAACAACCATTTTGTACCAGTTTTTGATG
GGAGAGGTTGTTCAAACCACACCAACCATAGGATCCAATGTCGAAGAGGT
GAGGTGGAAGAATATCCAATTTTGTATGTGGGATATCGGTGGTCAAGAAT
CCCTCAGAAAGGATTGGTCCACATATTATGCTACTGCTGAATTTCTAATC
TTTGTGATTGATAGTACAGATCGTGAAAGGTTACACGTATCCAAATCTGA
ACTCTACAACATGCTGGCTAACGAGGAACTGAGGCATGCCAGTTTACTTG
TATTCGCCAACAAACAAGACGTTAAGGGTTCGATGACGATGTCAGAGCTG
TCTGAACAATTGAATTTGACGTCCATACGAGACCACGGCTGGCATCTACA
GGCATGCTGTGCGTTATCTGGAGAAGGGCTATATCAAGGTTTGGAATGGC
TCGCGCAAAGGGTGAACAAATGATTAGAACAGTAGAAGTTATAATTTTTA
attaccatttttatttttcttgaacattattgaagaaaaataattcatga
ttGAGGTACAttagaaaattgtttttattcaaaaacgatAATGAAATAAC
CTTAGTggatttttagcctttttttattacgaattattttttgatttgct
TTATTTTCGCGAGTATAAGTGAATGGATATAAGACTCATCAAGGTGAATG
CAATATGTATTAGGCtagtgaaaaaaacaaaaagtgatTGACCGAGCTCA
AGGTAAGACGGTTGACCTCGCTGTTGACTAGGATCAATAAAACGTCGTCG
CTGCTTTGTCTCGTTGATTACTATCCATCTTACTTAACCTCGCTACTATT
ATAGTGATCCAGAATTGTTTCAGTGATAACCAATGCTATaaggtattttc
tttttttgtacaTAACAATTGTACATAAGTCGCACAAGTGTCTTTT
Run BLAST on NCBI

protein sequence of TCONS_00064238-protein

>TCONS_00064238-protein ID=TCONS_00064238-protein|Name=TCONS_00064238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MGILLSKVWYSFFGSKEHKVIIVGLDNAGKTTILYQFLMGEVVQTTPTIG
SNVEEVRWKNIQFCMWDIGGQESLRKDWSTYYATAEFLIFVIDSTDRERL
HVSKSELYNMLANEELRHASLLVFANKQDVKGSMTMSELSEQLNLTSIRD
HGWHLQACCALSGEGLYQGLEWLAQRVNK
Run BLAST on NCBI

transcript from alignment at scaffold_41:673497..684546-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064238 ID=TCONS_00064238|Name=TCONS_00064238|organism=Clytia hemisphaerica|type=transcript|length=11050bp|location=Sequence derived from alignment at scaffold_41:673497..684546- (Clytia hemisphaerica)
CCGTCATCTTGATGTTCGCAAGTAATTTTTTCGGTACGAATATTTTTTTT
TGGTCCTGAAATATATACGGTGTTTGTGTTTCTGTGTTTTATTTCTAACG
GAGCTGAATGTAACAGATAAAAGACTTATTATTGGGTTATTTTTTAGAAA
GGAAGCGATAAAAGGGAAGGTTGATATGGTGGGTGCTACTTGTGGTGGGG
AGAGTGGGTTTAAAAAATTTCAGACATAAATTCTCTTTTGTTCCAGGCTT
GGGGGGGGGGGGTTTGGGGGGGGGAGAGTGGGTTTAAAAAATTTCAGACA
TAAATTCTCTTTTTTTCCCGGGGGGGGGGGGGGGTTTAAAAAATTTCAGA
CATAAATTCTCTTTTTTTCCCGGGGGGGGGGGGGGGTTTAAAAAATTTCA
GACATAAATTCTCTTTTTTTCCCGGGGGGGGGGGGGGGTTGGAGGGGGTA
CAAACGGTTGGCAAACGATATCATACTCCAGGATGCAAGTGAAATTTTTC
AATCCGCGGACGTAGACGGGGGTTCGGTTATTATCAGTTAGGGTTAGGCG
ATGGGAATTTGATGTTCTGTTTACCGTCGACCGCCCGCATGCTCTTGAGC
CGCCGCTCAAAAAAGTTCATTATTTCTTAAAAACTCATTATTTTCTTCTT
TTCCTGTGCCAAGCTATCCAAAACACTCAAAGTGAATCAAAAATAACATC
TGCGCTAACAAAATGTGCGCCTTGAGTAAAAAACATGGTTCCAATCACGT
CCGCGAATGGGGCAGGCATTTTTTTAAGCAGTGGGCGGCATCAAGGGCGT
TTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCATGT
CATTTTGATTCCGAAAGTGAAAGCAGCTCGATTTCACGGTGGAATTCAAC
TTTGTTGGAGATTGGAAGCACCAGGTAGGAATAATGAATAATGAATAATG
AAATTTTGCCGCATCAAATATTTTTTGAAACGTGACGGTAAACAGAACAT
CAAATTCCCATCGCCTTAGGGTTGGAGCTCGAGAGTCACAATGTAAGGCC
GAAGGCCTTCTTAGGGGCATTTGTACCCTGTGATCCCGTAGGGATCCTTG
TAGGGGCACCGGTAGGACTGGGAGCTTTCTTAATTAAGGTCTGAAAATTA
CACGCTATAAATATTTGTGAATGACAGCTTTCTGTCGTGTCTCGTGGCGC
AAGCGGTTAGGCATTGGGTTTGTAAACTAAGGTTACTTGCATTTGGTGGT
TCGAGCCGGGGTCGGTGACTTGTTTCACCGGTACGGGCAAATTTCAGAAA
AATACTTAGAAAACGGTTAGAAACAATTGAGAAAGATAGAAAATCAGGAT
AGAAGATAGGAAAGTAGAAAATAGGGGGGAAATAAGAGACAATGCATCCT
GGAGTATGATATCGTTTGCCAGCCGGTACAAACAGGGATTTAGAGGCGGC
AATCACAAATATCTTCATTTCACGTCCTTATTCGCAGTCTAGCAAAAAGT
TAATTCTTCTTTCAGAAAAAAGACTATATATACTGTCTGAAACCTCTAAT
AGCAACTCCAGAAGATTTTTCAAATTTTAATATTTTTTTCGAATCCTATC
TTGTAGAGCTTTGGAAAAGAAAGAAAATGAGGGCAAGGGTCATAGGCCTC
CAGAGGATAAGTGGTTGTAAAGATATTCAAATTTTAGTGTTGAAAACTTG
ACTAAACCAGACGTCCGCGCTCGATAGGATTGATCATCGGAACGGCTCGA
AGACGGATCGATATGTGATCGATGGATTACTTAACGATCCGGATAGGAGA
TCGATGGAAGATTCAGCCATTAAAAAGTCTTGAGTATCGATCCTTCGTTG
ATCCATTATCGAGTATTTCAATCAAGTATATCGATTCGCCATCGATCGTT
AATCGATTTGTCATAGATCGTTAATTGATTTGTCATCGATCGTAGATCGA
GTATGAGTCAATAGGGTATCGATAAGATCGATAAAAGATCGATGATAGAT
CGATAAATAGTCGATAACTAATCAAAAGCTTTAAAAAATCTTGAGTATCG
ATCCTCTATCAATCTCCTATCCGGATCGTTAAGTAATCCATCGATCACAT
ATCAATCGAGCGCGGATGTCTGGACTAAAAATGTCAAAAAAAAGGTTAGG
AAAATAACTTGGAAAAATAGACCTTTTCGCCTTTCCATCCCCCATCTTGA
ATTGTATGCAAAAATAGAGGAACGAAAAAGCCGTGGTTGGATTTAGTTGG
AAAGTATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGACAATAA
AGCATCTTATAAATAAATATCATAATCATTAGAATAATAAAAGATGGAAT
TTCTCAATCCAAAAAGAAATATTCACAGAACAACAAAAGCCTTTTATAAA
TTTGTTCTTAAAGACATAGCATATTCTGTTTTCATGCCATTAAGAAATTC
CACGAAGACGGATTACACACATCAAACTTTCAAAACACGCAAACTGAAAA
GCAGTAATTATGACGTCACACATTATCAATGTTTTGATTTGATCATTTAG
CGGCTCTATTCCCAGGAGAATAACTTACCGTCAGCCGAATAAGGATTATT
TTTTACCTTCGCTGATGATTTTTCAGTTTGAATTTGTGTCTAATGTTATT
GATTTTTGAAGTGCTAGTTCTAAGAGATGAGCGAATATAATTATTTTTAG
TTTTCAAGAGAAGCAAATTTAATCTTTCTTCTACAAGATTACACTTTAAT
ATAATGCCAATGTAAGTTTTATATTAATACTTTCTTTTTACATATGTTTT
GCATACTTTCTAAGGAAATTTCACAACAGTAATTCGGCCACCATAATTTT
TGCATACAATTCAATATGGCGGATGGAAAGGCGAAAAGGTCTATTCAAAA
AATGGGTCAAAAAAGAAAAAAGAAAATTTTTCCAGTCATGCTTTTTTGAT
TTAGCATATCTCTTTTTCTAATGTAGCTAGAGACCTGAAATTTGGAGGGA
GGATTCTTTGATGATATAACACTATTATCATATAAAAATATTTGTAAGGA
CTTTTTTCTTGCGTGATGGCGTGATCAGAGATTTCTTTTGGCGTGATGTC
GTGATCAAGATTTTGGCGTGATGCGTGATAGGGCAAAAATTTGAGGCGTG
ATGCGTGATTTGAGCAATTTTCGTGATGCGTGATGGAGAAAAATTTTTTG
CGTGATGGCGTGATTAGGGGTGCCGCTGGGGGGGCCTCTTGATATGAGTC
AAAAAAGGTGGTAAGACCCATTTTCATTCAAGGGGCCTCTGGAAATGTAG
GAACAAAAAGTTATAAGTAAAGAATAAGTTTTTCTGAAAGAAGAAACCCC
AAATCAAAAGAAAATCCATTTCGGCAGAAATAAAAACTTTTTTTTGGGAC
ATTTCCATGCTAAAGAAGCAAAAAAAGTTTCAGCCTTTTCAACTATTTGT
TCCTCCGTTTCCAGAAACATAATTGTTCATCAACAGTTATACAACTATTT
TTTCTCCCACGGAATTCAAATTCTTAAATGTTGCAAAAACGTTCTGCAAT
TTACCAATTTCCCGTCTAGCCCGTGTCCACAGTGGTTATATACCGCTGGA
AAGCTAAGATACCATGAGATTTGGGTGGAAACACTTTAACAGTGGTTTTT
ATTGATTATGTACTGATCTAGAAGGGTGCGGGTATTTAAGGCTAATTTTT
ACAAAAAAGCGTCGGTCATTGGTCAATGTCCAATTGAAAAGGCCATTTGA
CCGACTGAAAATCTTTTGTGTCGGTCATTATGTCCAAATGAAAAGATGAA
TAAAACCATTAACTTGATTCGAGAGCAAATCTTCTGTCCTCTATTAAACT
CTATTTTCTCTATTCTTTTTTTAATTGCCTCTTCGTAACTTTTAAGAGTT
TCTAAGTTCTCTTTTATTGAATCGCTTTCTTCGTTACTTTTGGGAGTGTT
TCCAAGATCATGTTTATCAAATCGTAACTTTTAAGAGTGTGTCTAAGTTC
ACTTTTATCGAATCACTTTCTTCGTAACTTTTGGGTGTGTTTCTAAGATT
ACTTTTATCAAATTTCCTTTTTCGCGTTTTTCGTAACTTTTACAAGTGTT
TCAAAGATCACTTTTATATCAAATCGCTTACTTCATAGTTTTTATTTAGA
GTGTTTCTAAGATCATGTTTATCAACTTAACACTTTCTTTATTACTGTAT
GAACCAGTTGCTCCAAGGTAACACTATCTTCTTATTGAGGTTAGAAAATA
TATCCTGCTAGTTGAAAAATTATGGCGACTGAATAACCGAGAGGATTTTG
AGTCTGACCGACTGGATTTGATTTCAGTCGGACATAATGTCCAAGCAACC
AAAAATATTTATTCGCAGCCCTGCATGCCTTTTGCTAGCAAACCTACAGT
ACAACCCAGGGAATGATAAAAAAGGAATGAAATGAATTCCTTTTATGTAA
TCTCGAACAGTGCAATCAATTTGTTTTTAGAGATGATTGACGTGATTGCG
TGAAAAATGAATCTGGATACATAACAAGTGTTACAAGAGGCTATATGAAG
GAAAAACTCTTAAAAATGACCAAATATTCCTTTGATTTTTGATTTAATGT
TATAGCTTCTTTTCATTTATTGGTTGAATGAGACACATGTAGTCTCTAAA
TTTACTAAGAAAAAAGTGTTAAAAATTTAATGGTCATATATACAATGAAT
ACAATGAAGAATCTAGGGGTGTGGTTTTTTTTAATCACCCTGTATTTTGC
TCCAATTTTCTTGCATTTCCAAGATATTGAATTTTCTGCTCGTCCATTTG
TTTTATTTTTAAATCTTTCACGCAAATTCCAGTATTACTCTGGTACTGTG
CTGTAGGGATGACATAGTTCGCACCCCCCCCTTTATAAAGGGGGGGTAGC
GATGTTCAGAAAATCTCAGAAAGGGGGGGGGGTAAGAGAATTTTTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTTTCGCAATGCA
GTGTGTTCTATTTTCTTTTGTTTAGAATTTGGGGGGGGGGTAGCATCAAA
TTTTAAAAGGGGGAAGAACCTAGGGTAGGGGGGGGTAGCTCTAGGGTAGG
GGGGGTAGTGACCCCCTTCCGAACTAGGGATGATTACTTGTGTTTTCATA
TTTCAACACCGCCATAATATTAAGTATCAAATTGTAGCCATAATTACCCT
AATAATTACCTAAATAATCTCCTCTTCTCCCTCAAAATAATGTTTAAATA
TAATACAATGAATGGGGAATTTGAACTGTATAATCTACAAGGGGATTTGC
GATATATGGAAATATGCAGTGCTGCAAGCTTATTTTGTATACTTCATTGT
TAGCAAAATTACTATGAGGGTCTTGATTTCCTCCCCTATATTTTAAGGGC
ACATTTTCTTAGGGTCTTCTTAGTTAGTGGTCTTTATCATTTTAGAGACA
AATTTTTGTTCTAGGGATTTTTAGTTGATAAATCAACAGTGATAGTGATA
TAGAAGACAATAATTTTTAATATGTTGACCACTCTGTAATAGACTATTAC
TAACAAAATACCAAATATACTTGCATCACATCAGCATAATCATCTGGTAA
AAAGATTAATGCAAAAGTTACATACAATATTGGATATAAAATCTATTTCT
GTTTATGGTTGGTTTGTTTCATCTGTGAAAGACAAATATTTGATTGAGGG
AAGAGTTTGAATCATTCAATACATGGCTCAGTTTGTTGTGTAATGGGAAT
TTTGTTATCTAAAGTTTGGTACTCATTTTTTGGGAGCAAAGGTATATGTT
CAAGTTTGTTTATTTCAAGACAACACATATTTTTTTGGCTGTGGTTTAGT
ATGGAGAACATCTGTTTTATAATTTAGAGTTACTACTATAAACTATTGTT
ACAAGAAAATGATGATATCAATTTCTTGATTAGGTAGGGAAATTCAGTCG
CAAGCTGTTATAAATTTCATTTCAATCATTTCTTTCTCCCAAAGTTTTAA
AATCTTACATTACATACATTTTATGAAATTTTTAATTACTTTCTTGTTTC
TTTTAATTTCAGAACATAAGGTCATCATAGTAGGCTTAGACAATGCTGGC
AAAACAACCATTTTGTACCAGTTGTAAGTAAAGTAAAATTTCATTTCATC
TTGTGACCATTCCCTGTCTGCCAAGCTCTTTTTGAAACCAACTCTTACAT
TTTTGGGCATTAGTTGTGTTCCCTATTGTATCTGTTGTTTCTGATCATCA
TAGTTATTATATCTTTGGACTCGCATTCTATTCAGCTTTCGATTGGTGTA
AAAATAATTTTCGTAGTACCTTTTTTATCAAAAGTAGCAATTTTTCTTCT
TCGTTTTTCTTCGCTTTCTTGGCAGAATTTTGGAAAACTAATAAGTGGAA
ACTATGAGCGCATTCAAATATCTTTCCAACGATACCAAACTTTTTATTAT
GCGACAATTGGTTGGAAAGTTATGGTCAAAAGTAATGGCCAAAAGTAAAA
ACACCGCACACCTTTTTGACACAGACTTAAATAAGTTATAGTACTCTGGG
CACGTTCCACAGTATGATAAACATGTTATCTTTCATTGTAAAGAGTAATT
TGTTACATACAGGAAATGATTTTTCATTCAGTTCATTTGATATTTATCTT
TGTTTAATCTTGTCTTTGATCTGTTTAATTGATTACTTAATTACCTGTTG
CATGTTCAGCAAATGACTTCCTAATTACATGCTGCTACCGTGTATTGCTG
ATAAAACCTATTTCCCACAGTGTGAGATTTTTCTAAAAATAATAAAAAAT
GTAAAAACTGTCAAAAGTCCCCTTTATTGGGCCATTCCATTTTATATCCA
TACAAGGGGGGGGGCTGGACGAACATTTCCAGGGGGTATAACGGAGGAGT
ATTTGTCCATTTTTCCAGGAGATAAAAGTTTATTCTAAAATTTCTAGGGG
TTAAAAGACTGATTTTAGTTCGTCCACCCTTACTTTTAAGGTATGTAAAG
AATTTTACAAGGGCTCTTTTGCAAATTTTGCCATTTTCCAGGGGATATCC
ATTTCTAAGAATCTTTATTTGTCTTAAAAAGGTTCGTCCACCCCCCCCCC
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTT
CCCCCCCCCCCCCCCCCCTGTATGGACATTTAATGGAACAGCCCATTGCA
GTGTTACAACGTTTCCATCTGTAGTAGAAAGAATTCCATCTAGTTGAGAT
ACAAATGGATGATTTCCGCCAAGCGAGAGAGTTTTTGGTGGTTAAATGAG
CCGTTAATCCCAAAATTTCTGTCAATATTCACAGTTGCAACACTACCATT
GGGTTAAAAAAAAGGAAGTGTTATTTTTTGCGAAATCACTGATTTGGTTA
TGAAAATTGTGCCCAGCTCGCATTTGGACTTTTAATGGTTAATCACACCC
TTTAAAGTAATAACAATTTTTTTTCTCATTATAGTTTGATGGGAGAGGTT
GTTCAAACCACACCAACCATAGGATCCAATGTCGAAGAGGTTCGATCATT
ACTTTTGTTTACAAAAGAAAAACATGTCAATTTTTTCTTATACACGGTGG
CCATAAAAATCTAAGAAGAATATAATAATGGAAATTCTTCATGATTTTAT
GAAAGTTTTTACGACCAATGGTCTGTCAACGTTAAGGGGGCAACGACGGC
TTGAATTGACTTTTTTGCTTGCGTCAGATGAATCTCATATGATTTCTTTC
ACTAGGTGAGGTGGAAGAATATCCAATTTTGTATGTGGGATATCGGTGGT
CAAGAATCCCTCAGAAAGGATTGGTCCACATATTATGCTACTGCTGAAGT
AAGAGTTTGTTATAATCTTCCTTGTTGAGGATCCTAATGTTTAAATGCTA
TCCGAAGGGCTGCTCCCAAATAATGCATTTTTCAGTTCACGATATCTTGA
GTGGTTTAGACTGATCCAAAAATTTTCGGAAAGAATAACTTAGTTATACA
AGAAATGTGGCTTGGTCTTATTTTCATGTCAACAAGATATCTTTAGAGCG
TTATATGACAAACTTTTTATGTGAGACCGCGAGCTGAGGAAACAAAAATG
GTATCCCCAATCCCTTATTTTCCCCATTTCTTGATGACCACACCCGTTAA
ATATCTGGTTATAATTAGCAGATTGAACTTTCTCTGAATTATGATCTTAT
ATTTCTTCTTTTTTTTTTCCTAGTTTCTAATCTTTGTGATTGATAGTACA
GATCGTGAAAGGTTACACGTATCCAAATCTGAACTCTACAACATGCTGGC
TAACGAGGTAACTCGTGCTTTGTGGTTCATAGTTATACTTTCATAGCAGT
GATGTCCATAAGACTGTACTTATCCAATTAGCTTCACAAAGTCCCCCAAA
TCAAAAAGTCGCTCACTTTTGGATGTAACGCAATCTTTGAATAACTTGAT
TCAGCGTCATAAATTACATCAATTTAACACTTTTCTTTATATTATTCTAT
GGTATTTTAGGAACTGAGGCATGCCAGTTTACTTGTATTCGCCAACAAAC
AAGACGTTAAGGTAAGCATAAATCTTCCATTTCGTAATTATGTTCACTTA
AGTCAGTCGTTATCATCCTCTGGAGTCACCTTGAGTCATCATTTTAATTA
TAATATAAAAGGTAGTTCTTGAGTATGTCCGTGACTGTACGAGACTGATT
CATCTGACTAGAGAATACTCAGAACTCTGATTAAATGATCAAGTTAAATC
TGCAATATTTCAGAATTTCCATATATTTATCAGCAGACACGTGTTTCGTA
CTTCCCAGAACTCGTCAGTGTGGCTCGGGTAAACGAGCATAGACTGATGT
TGTCAACAGAGAGCTCAAAAGACCAAGTGATGAACTTTTCATAATCGCTT
GTAAAAAGCGGGGTAGCAAAGCTTGACCCTCAACATAGTTGATCTAGAGT
GGTCAAAGAACCAAAGTTCTATGCATGATATTCTCTATATTTCTTTTCTT
TTCCAGGGTTCGATGACGATGTCAGAGCTGTCTGAACAATTGAATTTGAC
GTCCATACGAGACCACGGCTGGCATCTACAGGTACAATTATTAGATATAC
GGAATAATTATGAAAAGTAGGAAACGGATACTTTTTGTCCCAATAAACTT
TTGATATATATTTTTCAAAATAGATAAAATTTGAATAAAAACAAATCAAT
AAAATAAATATACTTCAATTCTATAATTTCAAGATTGGCTCAAAACATAT
GGAAAGTATCGGAACTAAAGTAATTTTTATTAAAATTACAAACACAAATA
ACTTTAGTTCGAATTTGAATTCGAGTGCGATTTTGTGCTCAGCTCGTTGG
AAAGATAATCTATTATTGAATAATTATTTACTTTTGAGAAATGTTTACAA
TGATTATGCTCCAAGTGTGAAGATTCACTCATGGAAAATTTGTAATTATA
GCATGATTCTTTTAATATTCTCATACTATGATATTCCACTCAGGATTACC
TTTTCAACGAGCCTACCTTTTTAATCGCAATGTCTGATCACGGGTTAAAA
TTCAATCTAAAGTTATCGGTATTATTAAATTTCTTGATTTAAAAGGACTA
AAATAGCGGACTTAAGTTTCTTGGGTAAATCAAATCTTTCTCGGTTGAAA
AGATAACATGAAACATAAGTCAAAGATCAGATTATCATTTGAATTTCTTT
CTTGTTCTAAACTTCTATATAATTTATCTTTTTTTCTTTTTTTACCTTCA
GGCATGCTGTGCGTTATCTGGAGAAGGGTGAGTTCAAAGTTTTTGTCTTT
CTTCTTTCTACTTTACTACTGCTTTATAATTTATACGAATTTCGAATTAT
AGAGAGATTCGATTAGTAGAAGATCGAATTAGCGAGAGCCCATTGCATTG
TTTTTGATTTATGACTTGATTTACTTTTTAGGCTATATCAAGGTTTGGAA
TGGCTCGCGCAAAGGGTGAACAAATGATTAGAACAGTAGAAGTTATAATT
TTTAATTACCATTTTTATTTTTCTTGAACATTATTGAAGAAAAATAATTC
ATGATTGAGGTACATTAGAAAATTGTTTTTATTCAAAAACGATAATGAAA
TAACCTTAGTGGATTTTTAGCCTTTTTTTATTACGAATTATTTTTTGATT
TGCTTTATTTTCGCGAGTATAAGTGAATGGATATAAGACTCATCAAGGTG
AATGCAATATGTATTAGGCTAGTGAAAAAAACAAAAAGTGATTGACCGAG
CTCAAGGTAAGACGGTTGACCTCGCTGTTGACTAGGATCAATAAAACGTC
GTCGCTGCTTTGTCTCGTTGATTACTATCCATCTTACTTAACCTCGCTAC
TATTATAGTGATCCAGAATTGTTTCAGTGATAACCAATGCTATAAGGTAT
TTTCTTTTTTTGTACATAACAATTGTACATAAGTCGCACAAGTGTCTTTT

Coding sequence (CDS) from alignment at scaffold_41:673497..684546-

>TCONS_00064238 ID=TCONS_00064238|Name=TCONS_00064238|organism=Clytia hemisphaerica|type=CDS|length=4860bp|location=Sequence derived from alignment at scaffold_41:673497..684546- (Clytia hemisphaerica)
GCTATATCAAGGTTTGGAATGGCTCGCGCAAAGGGTGAACAAATGAGCAT
GCTGTGCGTTATCTGGAGAAGGGGTTCGATGACGATGTCAGAGCTGTCTG
AACAATTGAATTTGACGTCCATACGAGACCACGGCTGGCATCTACAGGAA
CTGAGGCATGCCAGTTTACTTGTATTCGCCAACAAACAAGACGTTAAGTT
TCTAATCTTTGTGATTGATAGTACAGATCGTGAAAGGTTACACGTATCCA
AATCTGAACTCTACAACATGCTGGCTAACGAGGTGAGGTGGAAGAATATC
CAATTTTGTATGTGGGATATCGGTGGTCAAGAATCCCTCAGAAAGGATTG
GTCCACATATTATGCTACTGCTGAATTTGATGGGAGAGGTTGTTCAAACC
ACACCAACCATAGGATCCAATGTCGAAGAGAACATAAGGTCATCATAGTA
GGCTTAGACAATGCTGGCAAAACAACCATTTTGTACCAGTTATGGGAATT
TTGTTATCTAAAGTTTGGTACTCATTTTTTGGGAGCAAAGGCTATATCAA
GGTTTGGAATGGCTCGCGCAAAGGGTGAACAAATGAGCATGCTGTGCGTT
ATCTGGAGAAGGGGTTCGATGACGATGTCAGAGCTGTCTGAACAATTGAA
TTTGACGTCCATACGAGACCACGGCTGGCATCTACAGGAACTGAGGCATG
CCAGTTTACTTGTATTCGCCAACAAACAAGACGTTAAGTTTCTAATCTTT
GTGATTGATAGTACAGATCGTGAAAGGTTACACGTATCCAAATCTGAACT
CTACAACATGCTGGCTAACGAGGTGAGGTGGAAGAATATCCAATTTTGTA
TGTGGGATATCGGTGGTCAAGAATCCCTCAGAAAGGATTGGTCCACATAT
TATGCTACTGCTGAATTTGATGGGAGAGGTTGTTCAAACCACACCAACCA
TAGGATCCAATGTCGAAGAGAACATAAGGTCATCATAGTAGGCTTAGACA
ATGCTGGCAAAACAACCATTTTGTACCAGTTATGGGAATTTTGTTATCTA
AAGTTTGGTACTCATTTTTTGGGAGCAAAGGCTATATCAAGGTTTGGAAT
GGCTCGCGCAAAGGGTGAACAAATGAGCATGCTGTGCGTTATCTGGAGAA
GGGGTTCGATGACGATGTCAGAGCTGTCTGAACAATTGAATTTGACGTCC
ATACGAGACCACGGCTGGCATCTACAGGAACTGAGGCATGCCAGTTTACT
TGTATTCGCCAACAAACAAGACGTTAAGTTTCTAATCTTTGTGATTGATA
GTACAGATCGTGAAAGGTTACACGTATCCAAATCTGAACTCTACAACATG
CTGGCTAACGAGGTGAGGTGGAAGAATATCCAATTTTGTATGTGGGATAT
CGGTGGTCAAGAATCCCTCAGAAAGGATTGGTCCACATATTATGCTACTG
CTGAATTTGATGGGAGAGGTTGTTCAAACCACACCAACCATAGGATCCAA
TGTCGAAGAGAACATAAGGTCATCATAGTAGGCTTAGACAATGCTGGCAA
AACAACCATTTTGTACCAGTTATGGGAATTTTGTTATCTAAAGTTTGGTA
CTCATTTTTTGGGAGCAAAGGCTATATCAAGGTTTGGAATGGCTCGCGCA
AAGGGTGAACAAATGAGCATGCTGTGCGTTATCTGGAGAAGGGGTTCGAT
GACGATGTCAGAGCTGTCTGAACAATTGAATTTGACGTCCATACGAGACC
ACGGCTGGCATCTACAGGAACTGAGGCATGCCAGTTTACTTGTATTCGCC
AACAAACAAGACGTTAAGTTTCTAATCTTTGTGATTGATAGTACAGATCG
TGAAAGGTTACACGTATCCAAATCTGAACTCTACAACATGCTGGCTAACG
AGGTGAGGTGGAAGAATATCCAATTTTGTATGTGGGATATCGGTGGTCAA
GAATCCCTCAGAAAGGATTGGTCCACATATTATGCTACTGCTGAATTTGA
TGGGAGAGGTTGTTCAAACCACACCAACCATAGGATCCAATGTCGAAGAG
AACATAAGGTCATCATAGTAGGCTTAGACAATGCTGGCAAAACAACCATT
TTGTACCAGTTATGGGAATTTTGTTATCTAAAGTTTGGTACTCATTTTTT
GGGAGCAAAGGCTATATCAAGGTTTGGAATGGCTCGCGCAAAGGGTGAAC
AAATGAGCATGCTGTGCGTTATCTGGAGAAGGGGTTCGATGACGATGTCA
GAGCTGTCTGAACAATTGAATTTGACGTCCATACGAGACCACGGCTGGCA
TCTACAGGAACTGAGGCATGCCAGTTTACTTGTATTCGCCAACAAACAAG
ACGTTAAGTTTCTAATCTTTGTGATTGATAGTACAGATCGTGAAAGGTTA
CACGTATCCAAATCTGAACTCTACAACATGCTGGCTAACGAGGTGAGGTG
GAAGAATATCCAATTTTGTATGTGGGATATCGGTGGTCAAGAATCCCTCA
GAAAGGATTGGTCCACATATTATGCTACTGCTGAATTTGATGGGAGAGGT
TGTTCAAACCACACCAACCATAGGATCCAATGTCGAAGAGAACATAAGGT
CATCATAGTAGGCTTAGACAATGCTGGCAAAACAACCATTTTGTACCAGT
TATGGGAATTTTGTTATCTAAAGTTTGGTACTCATTTTTTGGGAGCAAAG
GCTATATCAAGGTTTGGAATGGCTCGCGCAAAGGGTGAACAAATGAGCAT
GCTGTGCGTTATCTGGAGAAGGGGTTCGATGACGATGTCAGAGCTGTCTG
AACAATTGAATTTGACGTCCATACGAGACCACGGCTGGCATCTACAGGAA
CTGAGGCATGCCAGTTTACTTGTATTCGCCAACAAACAAGACGTTAAGTT
TCTAATCTTTGTGATTGATAGTACAGATCGTGAAAGGTTACACGTATCCA
AATCTGAACTCTACAACATGCTGGCTAACGAGGTGAGGTGGAAGAATATC
CAATTTTGTATGTGGGATATCGGTGGTCAAGAATCCCTCAGAAAGGATTG
GTCCACATATTATGCTACTGCTGAATTTGATGGGAGAGGTTGTTCAAACC
ACACCAACCATAGGATCCAATGTCGAAGAGAACATAAGGTCATCATAGTA
GGCTTAGACAATGCTGGCAAAACAACCATTTTGTACCAGTTATGGGAATT
TTGTTATCTAAAGTTTGGTACTCATTTTTTGGGAGCAAAGGCTATATCAA
GGTTTGGAATGGCTCGCGCAAAGGGTGAACAAATGAGCATGCTGTGCGTT
ATCTGGAGAAGGGGTTCGATGACGATGTCAGAGCTGTCTGAACAATTGAA
TTTGACGTCCATACGAGACCACGGCTGGCATCTACAGGAACTGAGGCATG
CCAGTTTACTTGTATTCGCCAACAAACAAGACGTTAAGTTTCTAATCTTT
GTGATTGATAGTACAGATCGTGAAAGGTTACACGTATCCAAATCTGAACT
CTACAACATGCTGGCTAACGAGGTGAGGTGGAAGAATATCCAATTTTGTA
TGTGGGATATCGGTGGTCAAGAATCCCTCAGAAAGGATTGGTCCACATAT
TATGCTACTGCTGAATTTGATGGGAGAGGTTGTTCAAACCACACCAACCA
TAGGATCCAATGTCGAAGAGAACATAAGGTCATCATAGTAGGCTTAGACA
ATGCTGGCAAAACAACCATTTTGTACCAGTTATGGGAATTTTGTTATCTA
AAGTTTGGTACTCATTTTTTGGGAGCAAAGGCTATATCAAGGTTTGGAAT
GGCTCGCGCAAAGGGTGAACAAATGAGCATGCTGTGCGTTATCTGGAGAA
GGGGTTCGATGACGATGTCAGAGCTGTCTGAACAATTGAATTTGACGTCC
ATACGAGACCACGGCTGGCATCTACAGGAACTGAGGCATGCCAGTTTACT
TGTATTCGCCAACAAACAAGACGTTAAGTTTCTAATCTTTGTGATTGATA
GTACAGATCGTGAAAGGTTACACGTATCCAAATCTGAACTCTACAACATG
CTGGCTAACGAGGTGAGGTGGAAGAATATCCAATTTTGTATGTGGGATAT
CGGTGGTCAAGAATCCCTCAGAAAGGATTGGTCCACATATTATGCTACTG
CTGAATTTGATGGGAGAGGTTGTTCAAACCACACCAACCATAGGATCCAA
TGTCGAAGAGAACATAAGGTCATCATAGTAGGCTTAGACAATGCTGGCAA
AACAACCATTTTGTACCAGTTATGGGAATTTTGTTATCTAAAGTTTGGTA
CTCATTTTTTGGGAGCAAAGGCTATATCAAGGTTTGGAATGGCTCGCGCA
AAGGGTGAACAAATGAGCATGCTGTGCGTTATCTGGAGAAGGGGTTCGAT
GACGATGTCAGAGCTGTCTGAACAATTGAATTTGACGTCCATACGAGACC
ACGGCTGGCATCTACAGGAACTGAGGCATGCCAGTTTACTTGTATTCGCC
AACAAACAAGACGTTAAGTTTCTAATCTTTGTGATTGATAGTACAGATCG
TGAAAGGTTACACGTATCCAAATCTGAACTCTACAACATGCTGGCTAACG
AGGTGAGGTGGAAGAATATCCAATTTTGTATGTGGGATATCGGTGGTCAA
GAATCCCTCAGAAAGGATTGGTCCACATATTATGCTACTGCTGAATTTGA
TGGGAGAGGTTGTTCAAACCACACCAACCATAGGATCCAATGTCGAAGAG
AACATAAGGTCATCATAGTAGGCTTAGACAATGCTGGCAAAACAACCATT
TTGTACCAGTTATGGGAATTTTGTTATCTAAAGTTTGGTACTCATTTTTT
GGGAGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040266XLOC_040266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064238-exon-scaffold_41-1575043694:684514..684546TCONS_00064238-exon-scaffold_41-1575043694:684514..684546Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:678206..678454TCONS_00064238-exon-scaffold_41-1575043694:678206..678454Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:677874..677934TCONS_00064238-exon-scaffold_41-1575043694:677874..677934Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:676408..676462TCONS_00064238-exon-scaffold_41-1575043694:676408..676462Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:676099..676191TCONS_00064238-exon-scaffold_41-1575043694:676099..676191Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:675640..675723TCONS_00064238-exon-scaffold_41-1575043694:675640..675723Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:675386..675436TCONS_00064238-exon-scaffold_41-1575043694:675386..675436Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:674866..674940TCONS_00064238-exon-scaffold_41-1575043694:674866..674940Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:674170..674195TCONS_00064238-exon-scaffold_41-1575043694:674170..674195Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1575043694:673497..674015TCONS_00064238-exon-scaffold_41-1575043694:673497..674015Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:684514..684546TCONS_00064238-exon-scaffold_41-1510915933:684514..684546Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:678206..678454TCONS_00064238-exon-scaffold_41-1510915933:678206..678454Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:677874..677934TCONS_00064238-exon-scaffold_41-1510915933:677874..677934Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:676408..676462TCONS_00064238-exon-scaffold_41-1510915933:676408..676462Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:676099..676191TCONS_00064238-exon-scaffold_41-1510915933:676099..676191Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:675640..675723TCONS_00064238-exon-scaffold_41-1510915933:675640..675723Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:675386..675436TCONS_00064238-exon-scaffold_41-1510915933:675386..675436Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:674866..674940TCONS_00064238-exon-scaffold_41-1510915933:674866..674940Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:674170..674195TCONS_00064238-exon-scaffold_41-1510915933:674170..674195Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1510915933:673497..674015TCONS_00064238-exon-scaffold_41-1510915933:673497..674015Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:684514..684546TCONS_00064238-exon-scaffold_41-1491911889:684514..684546Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:678206..678454TCONS_00064238-exon-scaffold_41-1491911889:678206..678454Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:677874..677934TCONS_00064238-exon-scaffold_41-1491911889:677874..677934Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:676408..676462TCONS_00064238-exon-scaffold_41-1491911889:676408..676462Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:676099..676191TCONS_00064238-exon-scaffold_41-1491911889:676099..676191Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:675640..675723TCONS_00064238-exon-scaffold_41-1491911889:675640..675723Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:675386..675436TCONS_00064238-exon-scaffold_41-1491911889:675386..675436Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:674866..674940TCONS_00064238-exon-scaffold_41-1491911889:674866..674940Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:674170..674195TCONS_00064238-exon-scaffold_41-1491911889:674170..674195Clytia hemisphaericaexon
TCONS_00064238-exon-scaffold_41-1491911889:673497..674015TCONS_00064238-exon-scaffold_41-1491911889:673497..674015Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064238-proteinTCONS_00064238-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:673497..684546 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.3981	18.4158	26.5345	31.6824	88.7669	61.322	69.1001	70.8262	58.6396	54.3867	38.5086	40.3066	32.7419	31.5926	32.9282	33.3981	53.2917	45.4352	20.8752	27.8954	41.5129	40.61	41.6587	45.898	29.312	35.5032	233.759	201.462	50.3136	53.8924
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00064238 vs. Swiss-Prot (Human)
Match: ARL5B (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.179e-84
Identity = 118/177 (66.67%), Postives = 148/177 (83.62%), Query Frame = 3 
Query:  234 MGILLSKVWYSFFGSKEHKVIIVGLDNAGKTTILYQFLMGEVVQTTPTIGSNVEEVRWKNIQFCMWDIGGQESLRKDWSTYYATAEFLIFVIDSTDRERLHVSKSELYNMLANEELRHASLLVFANKQDVKGSMTMSELSEQLNLTSIRDHGWHLQACCALSGEGLYQGLEWLAQRV 764
            MG++ +K+W S F ++EHKVIIVGLDNAGKTTILYQFLM EVV T+PTIGSNVEE+  KN  F MWDIGGQESLR  W+TYY+  EF+I V+DS DRERL ++K ELY MLA+E+LR A++L+FANKQD+KG MT +E+S+ L L+SI+DH WH+Q+CCAL+GEGL QGLEW+  R+
Sbjct:    1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
The following BLAST results are available for this feature:
BLAST of TCONS_00064238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL5B2.179e-8466.67ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
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