TCONS_00064238-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064238-protein
Unique NameTCONS_00064238-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064238-protein ID=TCONS_00064238-protein|Name=TCONS_00064238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MGILLSKVWYSFFGSKEHKVIIVGLDNAGKTTILYQFLMGEVVQTTPTIG
SNVEEVRWKNIQFCMWDIGGQESLRKDWSTYYATAEFLIFVIDSTDRERL
HVSKSELYNMLANEELRHASLLVFANKQDVKGSMTMSELSEQLNLTSIRD
HGWHLQACCALSGEGLYQGLEWLAQRVNK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040266XLOC_040266Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064238TCONS_00064238Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 119..140
score: 26.47
coord: 19..42
score: 46.32
coord: 74..99
score: 32.81
coord: 47..71
score: 36.0
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 8..176
e-value: 2.3E-66
score: 222.5
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 1..177
e-value: 9.8E-20
score: 81.6
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..179
e-value: 5.5E-73
score: 258.5
NoneNo IPR availableGENE3D3.40.50.300coord: 3..179
e-value: 3.9E-46
score: 156.1
NoneNo IPR availableCDDcd04153Arl5_Arl8coord: 3..176
e-value: 2.99536E-113
score: 321.606
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 16..140
e-value: 1.1E-19
score: 68.8
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 11..177
score: 23.239
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..177

Blast
[Close]
BLAST of TCONS_00064238-protein vs. Swiss-Prot (Human)
Match: ARL5B (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.394e-89
Identity = 118/177 (66.67%), Postives = 148/177 (83.62%), Query Frame = 0 
Query:    1 MGILLSKVWYSFFGSKEHKVIIVGLDNAGKTTILYQFLMGEVVQTTPTIGSNVEEVRWKNIQFCMWDIGGQESLRKDWSTYYATAEFLIFVIDSTDRERLHVSKSELYNMLANEELRHASLLVFANKQDVKGSMTMSELSEQLNLTSIRDHGWHLQACCALSGEGLYQGLEWLAQRV 177
            MG++ +K+W S F ++EHKVIIVGLDNAGKTTILYQFLM EVV T+PTIGSNVEE+  KN  F MWDIGGQESLR  W+TYY+  EF+I V+DS DRERL ++K ELY MLA+E+LR A++L+FANKQD+KG MT +E+S+ L L+SI+DH WH+Q+CCAL+GEGL QGLEW+  R+
Sbjct:    1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
The following BLAST results are available for this feature:
BLAST of TCONS_00064238-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL5B1.394e-8966.67ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
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