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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064217 ID=TCONS_00064217|Name=TCONS_00064217|organism=Clytia hemisphaerica|type=transcript|length=1239bp
AGGATATATTCTTGAAATACAAGATATGGTCAACAGCCGCccaaatttcc
aatttttgCAATGACCTTTCAAAACAATTCATCACTACTGAAGAAGTACC
AACCATTATCAGCTTCTGGTGGTACTCAACAATCTCTTGCAATGGAAGTG
ACCTATCTACCCTCTGAAATCCTCAACATCATCGCCCTTGTTATTCCATG
TCTTTTAGGAACATTTGGTAATCTACTTGTCACCTATGTATTCATGTGGA
AGAAACGTAGAATGCGGAAACCGTTCGAATCTTTACTATCAATACTAGCT
GTAGTTGACATGTTTGCATCAATGGTTGTTCCTGTATTATTCATCTATGG
TGCTATTACGAAATACCGACGTTGGCATTTCGGATATATTGGATGTAAAA
TGATTTCAAGTTTTTTCCCAATCAGCGTGACTTTATCTCAAGGGATACTC
GTTTTAATTTCATACGAACGTTACAAATCGATTAAAGCTCCATTCGAGCG
CTCGCTGCGACAAAGTTTCATTCTAGTTTGGATGCTCATCACTTTTGTCA
TAGGTTTGATATTGGTATCTCCTTATGTATACGTTCTGGAGTTGGTAACT
TCTGACCAGTACGGTATCAACACTTGTATTCCGTCGGAGAAAGAAACAAG
CATAATGTTGTTGTATAGCATTGGGAATGTCATCAGAGACTTTGGAGCTA
CTTTTGTTATGATAACATTGGGCCGAATGTCGAATAATGTTTTAAAGCGA
AGCAATACGCAATTGAATGCGGACATGACACAATTTACGGACGGCCCTAG
ATGTCGTAACATGGAAAAAGCTCGTAAAATGTTGATAGTGGTTGTCATAG
TATTTTCCACGTGTGTCATCCCACTGGATGTATTTCAGtttattgtttac
attttgtatCATGTTGGAGTGACATTCAGTAAACGTGCTTACGAGACTGT
TCTAACGTTCAATTCAGTGTTGAGTGTTCTACAAATTATGAACAGTGCGA
CTAATGTTGTTATTTATTCGAGGATGCACAAAGACTTTACGCGCTCCTTG
TTTTCTAATGCTCGTAAAACGCTTCGAAATTTCTCGCAAATTGTTCGAGA
GTTTCGTATGAGTGACCAGAAGAAAGAACAATCAACGGAACTTTTAGATT
TATCTTTGTAAACGACTTGGAAAGGGctccaaaaatatatttgaaatctt
agaggttttattttgaaagatgaaaaaagtgaagctttC Run BLAST on NCBI protein sequence of TCONS_00064217-protein >TCONS_00064217-protein ID=TCONS_00064217-protein|Name=TCONS_00064217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MTFQNNSSLLKKYQPLSASGGTQQSLAMEVTYLPSEILNIIALVIPCLLG
TFGNLLVTYVFMWKKRRMRKPFESLLSILAVVDMFASMVVPVLFIYGAIT
KYRRWHFGYIGCKMISSFFPISVTLSQGILVLISYERYKSIKAPFERSLR
QSFILVWMLITFVIGLILVSPYVYVLELVTSDQYGINTCIPSEKETSIML
LYSIGNVIRDFGATFVMITLGRMSNNVLKRSNTQLNADMTQFTDGPRCRN
MEKARKMLIVVVIVFSTCVIPLDVFQFIVYILYHVGVTFSKRAYETVLTF
NSVLSVLQIMNSATNVVIYSRMHKDFTRSLFSNARKTLRNFSQIVREFRM
SDQKKEQSTELLDLSL Run BLAST on NCBI transcript from alignment at scaffold_41:426183..433047- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064217 ID=TCONS_00064217|Name=TCONS_00064217|organism=Clytia hemisphaerica|type=transcript|length=6865bp|location=Sequence derived from alignment at scaffold_41:426183..433047- (Clytia hemisphaerica)
AGGATATATTCTTGAAATACAAGATATGGTCAACAGCCGCCCAAATTTCC
AATTTTTGGTATAATAAAATCAGGTTTCATTATCATTCTCATTTACCAAG
GTACCGGTTGAAGCAAGGATCTGTTTCTTTTAAGCGAATTTTCGGGAGGT
GGCATCCAAAATCAGATTCTTCGTGTATTGCGTTTGGGGGCATTTGCAAG
CTGATCCAACCCAAAATTTTACCATGTAAAGTATTTTTTGAATTAGCCTG
TATGGTACTATTTGGTTTCAAAAGTCTTTTTGTATGGAAAAACCATATTA
AGTCTAAAATAAAATAATTTTTGCAAGCATTTAATAAATACAAACACAGC
CTTAGTCTAATTAAATAATGTACACGCAAACAACACAAATCCTGTCAATT
AGAATTAAAGACCAATATTTTACAAGTTATGTGTTAGTTTTAAATCACGA
AACTGATGTATTTGAAGAGGTTTGATGTAATTGTTTGGAGATTTGCTTCA
ATGGTAGACGATCGCTAAAAAAGGGAATAGTTTAGGAGGCGGGATAAATT
TGTAAACGGGTGGCTAGCCCGGGGTGAAGTAAGCTTGGCGGAGGTATTTA
CAGCGTTATTGGTCCATTTGTTCCAAACTCTACTGCCACTATTTTCCGTA
AACCGCCGTGTTGGCTGTGAACTTATATTTCTCTGCGTTTACTATGTCCT
TCTTCAAGAGGCCCCAGTGGTTTGCGTTATTGTCTGGTTTTTATTTTTCT
GGCATTATGGCGTGATCAAGATCTTGGACTGATGTGTGATAGGGCAAAAA
TTTGAGAGGTGATGCGTAATTTTGGCTATTTGAACCTTTTTTGTGTGATG
AATAAATTTTGACAATTTTCTTGATCACGATAAGGCATGATGAGGGGTGC
AACTTGGTGGGCTCCTTCAAGGCTTTTATCTTAAAGAGACAATCACACAG
ATATAGTTTAATGTTGTGGAAATTTGATGATAATGTGGAAGTTTTAATCT
GAAAATCTTGTAGAAATAGCGGAAACTTTTGGTGAGGAAGATTTTTTTTT
CATCTTCTTTCGTAGAACGCAGTTCTGAGATTAATATAATACAGTTTTGT
CTTCTAAGGGATTTGTAGCAAGCGAGTGCGAATTTTCGACGGGATTTCTT
TTTCACAAACATACGGTGTCTGGTGATGAATATTAGTTTGTCAAACATGG
CTTCCATTTTCCTTTTGAATATTTGTCGTTCCAATTAAAAGTATTTCTTT
TCTTTTCAAAATACCTTCACTCCGAAATATAATTTTTGATGCGAATGTAA
ATAGAGAGCTTTCTGAACCTCAAGTTACCCTACTCGTCTCACGGAACGGC
TTTCTTATGATGGTCGAGTTCACAAGCATTTTAAAACGTATATATCTGTT
GGGTTGCCTAGAAAAAGAGTGAGTTGCCTTTGTTAAAAATGCTTGCCTTC
ATTAGCAGTAAGTTTGGCAAAGGAGGCATCAACTCGATCTCACATTTAAT
GTACAGTCAATTGTTTCGTCAATTCACTGGCTACACTTTAAATTTTTACG
TTATTTTACTTTAAGAACAAAGGGACAAAAAGCATATAAGAACATTACAG
ACTTCAATTTCTTAGAAAATTAAACAAAAATACTCACAAAAATACAAAGA
CTTTAAAGTTATAAAATATCTTGTAAAAAAACGTGTAGCCTTTTTGTCCA
CCTTTTTCTCCGTTAGGTTTGATACTGGGAATATCTTCTCAGTCAATTAT
TGTTTGGCAACGTTTTATTGTTTGGCAACGTTCTTAGCAAACTCTGGTAT
GACAAGTTTATTATTCAGTTGGAATGATTTAGGGTAATTTTCAACGAAGA
GAAGAGGTTAAAACTAGCTTTTTCCTTCACTATTTAATAGATTGTGAAGA
ATTCGAGCTTTGAATTAATCTAATGTTCTGGCTCTCTTGGATGTATCACC
CTGGAGGATACTGAGCTATCTTAGCAGAACGGTAGGATGTACCTCAGAGG
TTTAAACAACGAACCCCTTTGTTTTGTTGTTTCGAAAGAGATGATTTTTG
GGATGAAAAGGTAGTCTGGGACACTGTACACGTTTGTACCATTTTTGACC
TGGATACTTCTTGTCTTCTTGGATCGAGCACTACCTGTATGTACCTCTGA
GGTTTAAAAAACAAACCCTTTTGTTTTTTTGTTTTTTCGAAAGAGATGAT
TTTTGGGATGAAAAGGTAGTCTGGGACACTGTACACGTTTGTACTATTTT
TGACCTGGATACTTCTTGTCTTCTTGAATCGAGCACCACCTGTGTGTACT
TCTGAGGTTTAAAAAANTGACCTGGATACTTCTTGTCTTCTTGAATCGAG
CACTACCTGTATGTACCTCTGAGGTTTAAAAAACAAACCCTTTTGTGTTG
TTGAACTTTCGAAAGAGCTGACTTTGGGAAATGAAAAGGTAGCCTGGAAT
CCTCTGTACCATTTTTTGAATTGAAAACTACTTTTTGGACACACTTTCTT
TACTTATTCTATAATATTCAGCTCATTAGAAATATGTGGTCATGGAAGAA
AAGCATGTTTACTTAAGACGAAGATTGAGTAGGCTCGATTTAATACGATT
TATATCCTAATCTAATTCAGTCTGCTAGTCCCCTCAATCCTCATATCACA
GACTATAAGTAAAGGATTTTGATGTAAGACTGTCTCATAAGAAAGTTTTA
AAAACGTTCTCTATAGTGAATGATGTGTTTGTTTGTTTATTTTTTCAATT
TGTTTAATATATTTCCTTAAAGCTTACCATTGATTGAGATAGGAAGCGTT
CTTGAAAAATTGGAGGTCAAACGGTTTCTATCGGTACCATTATGATTATG
CATGACTTGAGCTTTTTCGTGTCTTCTTTTTACTTCTTTTCGGCGTGATT
CTGAATTTCATTGCGAGATAGCGTTCCTCAGATTTCGGTGTGATGCGTGA
TGGAGCAGACATTTGATGCGTGGTGCCTGACTTTAGCTTTACTTTGCTAA
TTTTTGCGTGAACTTTGCAATTTTCGGGGTAGTGATTAGACCAACAAAAT
TTGACGTGATGCGTGATGCGTAATGGAGCAGACATTTGATGCGTGGTACG
TGACTTTAGCTTTACTTCAATAATTTTTGCGTGATCTTTGCTATTGTCGG
GGTTGTGATTAGATCAACAAAATTTGGCGTGATGGAGTGATGAGGGGAAC
CGCAGGGCATCTTTCAACCTATGTATATCCTATTTATGTTGTGTTAAAGG
TTTTATTGTTACATAAGTGTTCCCGTATCATATCAGGACAGTGTTTGCCT
ATTGTTATATTATGCTGATTATAAGCAAAAAAGATTTTCCTCTTCCTGAC
CAATCTTGCTCCACATCCGTGTCAATCTAATGTGAAAAAGGTTGTGAATT
AAAATTGATGAGTAAGCAAGCTATATCCCTCTTATTTAAAAACAAAATCT
TTAAGCTGCAAAAAAAGTTATCTACAACTTTTTACAGATTAATTATTGTT
GTTTCTTGCAGTTGCTGAATTCGGAAAATTTCGTATAGCATTTTGGTGAT
ATGTAGCTCTGTGTATGTTTTCTCATAGCCACGAACTCTTTCCTCTGAAA
AAAATTAGAAAAAAACCTTCCTAATTTCCTTAATATCTTTGTGTCTTAAA
GAAATCCGGCTTTAAATTTCCCATATTCACTGACTGAATCAACAAAGAGA
TTATTGGGCGGAGAATGTAAAGTCATTTGAAGATCATTACCGGATCAAAA
GTAAAAACAACCTTTGTAAATTCATTTGTTGTACACTATATGAGAGTGAC
TTGGCTTTAGATGACACAGGTTAAAATTATCGGAGTTTTTTATTTTTCTA
AATATGCGTGGGATTGTTTCGAATAGAATTCCCTCGAGGAATTCCTAAGA
GATTTCTATTGTAATACCCCCGAAACAATCCCAGAATGTATCGCTTTTTT
AGAAAAATAAAAAACTCCTATTAGATCTATTCCAAGCCATCATGATTCGT
TGCTTTTCTGGTTTCCTTGGGCTGACCGTTTGTACCGTCAACTGCTCTAA
CTTGGGACTATCTGACAAAACATGGGACGGCAATTCGGCCACCATTTCAC
CGAGCCTCCAAAGTCATTTGATTTGAGTTAAGGAACGGCGTATTAAAAAA
TACACGATTTCTCTTTCGATTTTATTACAGTAAGTAAAACACAGACCAGA
TATGCAACAGTCCCATGTTTCGACCGATCGTCCCAAGTTAGAGCAGTTGA
CGGTACGATTTGTGTTTGAAAAAAGTGAAGTAGTATGAAGGCTTATGTGA
ATTTAATGGTCGGATTTGGTTGAAGATTTGAATGTTTCATGGCCATGACG
GGAGCTTGCTGGAGCAGTTTACCAATAAAACTCTCCAAATTTGCCTAATT
TGATTTACCTAAAGAAGGGGAATTGCAAATGTTTATACTTTTTCTCGTGT
AAATTTAGGTCAATATTTTACCTCTCAGAATAACTGATTCTACAAAACTT
ACATAAAGAGCCCTCACATTTTTTTGTCATTCTTCGAACTCTCGTGTGAA
GGATTAGTGACGAAAGGGTGCTAAGCATCGCTCGATATTTTTTCCATGGT
GAAAAGTGGAGGAAGGCAAGAAAGCTTTCTTTCAACTAGACACTATATTT
TTTGAGGAGGCAGTAATTTTTGTGAAGACTCTATTTTTTTTCTTATTTTT
CAGCATAAAACTGCTCTTAATTCTAATTCGTTTTTATCAAAAATGTTTTT
CAGTTCTGATATCTCTTTCAGACTGTATCTCCCATATTATGAAGATTTGT
TGATTTGTGCGGAACTTTACTCTCCATTAGTTAACACTGCCATCCCATTT
AACATAGTCATACGAAACTTTTCTTTCAAAATTTATTTTCACAGTTCTCA
AATTATATCTATAAAAGTTTACGAATGAGGACTTTCAAGACACAAATCTC
AGGATTTATATTCTTCATTTTTCTAGTAGATGTAACACTTTTTTCGAGTA
ATAGTAAACTATTTGGTGTAAGTGTAGTCCAAACTTTTTGAACCATTTAC
ATACTCTTTCATCCAAAGACCTTAAGAAACAATATGCATTTTGAGAGATG
AGAAATAGTTAATTGGTTTTATTGGGTCCAATAGAAAATGTAAGGTTTTA
AATAAATAATAGGATTTCGAAATTCCATTTTTTCTTGACGAACATAATTT
TTATACGTGGGAGCAGGGAGGTCACTGTATTTCGAAAAATTACAAAATAG
TTTTTCCATTAGGGCTATTTGCTTGAATCTTTTATGAAAAAATAAGTCTA
GAATCACATTACAATTTTCTTTTCTATAATTTTCATGTTAGCTTCCTTCA
CAGGGTAGCCGCGGTGCTTTTTGTATTTTTTGACAATCGACATACATGAT
TTATTTATGTGTTTTAAAAGTCTGAAATTTTTTATTTTTTAAAACTGCCT
CTTCCCTTTTCCGTCAATACTATGCTTTTGAGGAGGATATTGAGTTCGGT
CATGTAATTACTTTGTAAGTGACTATTCCTTGGCATCTATTATTGAATTT
ATTTAATTTCAGCTATACAGAGGTCATAGTCGGGGAAACGTCCGTTCGGT
CCCGTCCGGTAATTGTAATTTTATCTTCAGAATAACTAGAAACTAGATCT
TATTCATGCAACATTTATTTTATTTTATTTACAGCAATGACCTTTCAAAA
CAATTCATCACTACTGAAGAAGTACCAACCATTATCAGCTTCTGGTGGTA
CTCAACAATCTCTTGCAATGGAAGTGACCTATCTACCCTCTGAAATCCTC
AACATCATCGCCCTTGTTATTCCATGTCTTTTAGGAACATTTGGTAATCT
ACTTGTCACCTATGTATTCATGTGGAAGAAACGTAGAATGCGGAAACCGT
TCGAATCTTTACTATCAATACTAGCTGTAGTTGACATGTTTGCATCAATG
GTTGTTCCTGTATTATTCATCTATGGTGCTATTACGAAATACCGACGTTG
GCATTTCGGATATATTGGATGTAAAATGATTTCAAGTTTTTTCCCAATCA
GCGTGACTTTATCTCAAGGGATACTCGTTTTAATTTCATACGAACGTTAC
AAATCGATTAAAGCTCCATTCGAGCGCTCGCTGCGACAAAGTTTCATTCT
AGTTTGGATGCTCATCACTTTTGTCATAGGTTTGATATTGGTATCTCCTT
ATGTATACGTTCTGGAGTTGGTAACTTCTGACCAGTACGGTATCAACACT
TGTATTCCGTCGGAGAAAGAAACAAGCATAATGTTGTTGTATAGCATTGG
GAATGTCATCAGAGACTTTGGAGCTACTTTTGTTATGATAACATTGGGCC
GAATGTCGAATAATGTTTTAAAGCGAAGCAATACGCAATTGAATGCGGAC
ATGACACAATTTACGGACGGCCCTAGATGTCGTAACATGGAAAAAGCTCG
TAAAATGTTGATAGTGGTTGTCATAGTATTTTCCACGTGTGTCATCCCAC
TGGATGTATTTCAGTTTATTGTTTACATTTTGTATCATGTTGGAGTGACA
TTCAGTAAACGTGCTTACGAGACTGTTCTAACGTTCAATTCAGTGTTGAG
TGTTCTACAAATTATGAACAGTGCGACTAATGTTGTTATTTATTCGAGGA
TGCACAAAGACTTTACGCGCTCCTTGTTTTCTAATGCTCGTAAAACGCTT
CGAAATTTCTCGCAAATTGTTCGAGAGTTTCGTATGAGTGACCAGAAGAA
AGAACAATCAACGGAACTTTTAGATTTATCTTTGTAAACGACTTGGAAAG
GGCTCCAAAAATATATTTGAAATCTTAGAGGTTTTATTTTGAAAGATGAA
AAAAGTGAAGCTTTC Coding sequence (CDS) from alignment at scaffold_41:426183..433047- >TCONS_00064217 ID=TCONS_00064217|Name=TCONS_00064217|organism=Clytia hemisphaerica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_41:426183..433047- (Clytia hemisphaerica)
ATGACCTTTCAAAACAATTCATCACTACTGAAGAAGTACCAACCATTATC
AGCTTCTGGTGGTACTCAACAATCTCTTGCAATGGAAGTGACCTATCTAC
CCTCTGAAATCCTCAACATCATCGCCCTTGTTATTCCATGTCTTTTAGGA
ACATTTGGTAATCTACTTGTCACCTATGTATTCATGTGGAAGAAACGTAG
AATGCGGAAACCGTTCGAATCTTTACTATCAATACTAGCTGTAGTTGACA
TGTTTGCATCAATGGTTGTTCCTGTATTATTCATCTATGGTGCTATTACG
AAATACCGACGTTGGCATTTCGGATATATTGGATGTAAAATGATTTCAAG
TTTTTTCCCAATCAGCGTGACTTTATCTCAAGGGATACTCGTTTTAATTT
CATACGAACGTTACAAATCGATTAAAGCTCCATTCGAGCGCTCGCTGCGA
CAAAGTTTCATTCTAGTTTGGATGCTCATCACTTTTGTCATAGGTTTGAT
ATTGGTATCTCCTTATGTATACGTTCTGGAGTTGGTAACTTCTGACCAGT
ACGGTATCAACACTTGTATTCCGTCGGAGAAAGAAACAAGCATAATGTTG
TTGTATAGCATTGGGAATGTCATCAGAGACTTTGGAGCTACTTTTGTTAT
GATAACATTGGGCCGAATGTCGAATAATGTTTTAAAGCGAAGCAATACGC
AATTGAATGCGGACATGACACAATTTACGGACGGCCCTAGATGTCGTAAC
ATGGAAAAAGCTCGTAAAATGTTGATAGTGGTTGTCATAGTATTTTCCAC
GTGTGTCATCCCACTGGATGTATTTCAGTTTATTGTTTACATTTTGTATC
ATGTTGGAGTGACATTCAGTAAACGTGCTTACGAGACTGTTCTAACGTTC
AATTCAGTGTTGAGTGTTCTACAAATTATGAACAGTGCGACTAATGTTGT
TATTTATTCGAGGATGCACAAAGACTTTACGCGCTCCTTGTTTTCTAATG
CTCGTAAAACGCTTCGAAATTTCTCGCAAATTGTTCGAGAGTTTCGTATG
AGTGACCAGAAGAAAGAACAATCAACGGAACTTTTAGATTTATCTTTGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064217-exon-scaffold_41-1575043694:432990..433047 | TCONS_00064217-exon-scaffold_41-1575043694:432990..433047 | Clytia hemisphaerica | exon |
| TCONS_00064217-exon-scaffold_41-1575043694:426183..427363 | TCONS_00064217-exon-scaffold_41-1575043694:426183..427363 | Clytia hemisphaerica | exon |
| TCONS_00064217-exon-scaffold_41-1510915933:432990..433047 | TCONS_00064217-exon-scaffold_41-1510915933:432990..433047 | Clytia hemisphaerica | exon |
| TCONS_00064217-exon-scaffold_41-1510915933:426183..427363 | TCONS_00064217-exon-scaffold_41-1510915933:426183..427363 | Clytia hemisphaerica | exon |
| TCONS_00064217-exon-scaffold_41-1491911889:432990..433047 | TCONS_00064217-exon-scaffold_41-1491911889:432990..433047 | Clytia hemisphaerica | exon |
| TCONS_00064217-exon-scaffold_41-1491911889:426183..427363 | TCONS_00064217-exon-scaffold_41-1491911889:426183..427363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:426183..433047 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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