TCONS_00064210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064210
Unique NameTCONS_00064210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064210 ID=TCONS_00064210|Name=TCONS_00064210|organism=Clytia hemisphaerica|type=transcript|length=1177bp
GCGTGAACCTTTTTTTGATGATGTTTTCTTTAGTCATCAACCTTGAACAT
ACTAGTATAAAAGTGAGGCGTGTATGCGGAAATTGattaatattgaaaaa
attttacttggAGGCAGTCGTTTGGAGAACTCTCATATTTAAAGAATCAT
GTGGACTTCGACAGCAGTCATCTTAACATTATTCGCTTGGATTTGCAATT
GTGAAGtACAATGGGAGATGCTTGGCAACAATATCTGTTACGGCGCACGC
CGCGGAACATACGGAACAATCAAGCTTGAAAAAGAAGGATTTTTATTTGC
ACTTAAATTTGAACACGTAAGCGGTTACTTGACGTGCGATCGTGGACGTA
ACACGTATTATGCAAGCAACTGGGGATGTCACGCTGACGGAGATCGTAAC
GGGATCACGAACAAAGACATTGGTACGTTTCTGACGGACGAATCGGATGA
AATCATTTTTCCCGCTGGAGCTAAAGAATTATCACAGTGGCAAGAAAATC
CATACTACAGATTACCAGGATACAAAGGTGATTCCAAGGACCTCGTTATG
GCCTGTCATTGTTCACCGATGTACGCTCGTGTTGGTCAAGAATTAcgtat
ctggtacggcgaagcACTTTTCAATCGAATGATTCGTTCTCGACGATATG
ACGAACGAGATAATGGTGGTCAACATTGTATCAATATTTACGCCAAGTTT
GGTGGATTATAAGATGTGTGTCACTCCTTAATATTGAGTTTATGtatctg
tgtttttctgcgGCGGAGACGGTCAGCTTCTGCtttgtctacatcctgac
tgactaaGGACGACGGTAAGTCAGTACTTTTACCGTCTTCGATTTTGCCG
GTCAAAGCTTTggttttttttccaaatcggCCCAGCCACTCAGCCGTCCT
TAATGaagcaaatacataaactcgttaATATTTTTAGATGGATTTAGAAG
CTATTTTGAACTCTCCATTTTCGTAGTTGAGCAAACCTCAATATTTGCTT
GCTTTGGAGCTgtagtgtaactttGATACCAAACTCTAATACctattatt
tgttttttaatgattttttaattactttttatttttgttgattattttgt
gatatatttttattttctcaaatataaataaattattaCCGCCGTAAGAT
TTTTCTTAAGAACGGCTTACCTATAAA
Run BLAST on NCBI

protein sequence of TCONS_00064210-protein

>TCONS_00064210-protein ID=TCONS_00064210-protein|Name=TCONS_00064210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MWTSTAVILTLFAWICNCEVQWEMLGNNICYGARRGTYGTIKLEKEGFLF
ALKFEHVSGYLTCDRGRNTYYASNWGCHADGDRNGITNKDIGTFLTDESD
EIIFPAGAKELSQWQENPYYRLPGYKGDSKDLVMACHCSPMYARVGQELR
IWYGEALFNRMIRSRRYDERDNGGQHCINIYAKFGGL
Run BLAST on NCBI

transcript from alignment at scaffold_41:374673..377334-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064210 ID=TCONS_00064210|Name=TCONS_00064210|organism=Clytia hemisphaerica|type=transcript|length=2662bp|location=Sequence derived from alignment at scaffold_41:374673..377334- (Clytia hemisphaerica)
GCGTGAACCTTTTTTTGATGATGTTTTCTTTAGTCATCAACCTTGAACAT
ACTAGTATAAAAGTGAGGCGTGTATGCGGAAATTGATTAATATTGAAAAA
ATTTTACTTGGAGGCAGTCGTTTGGAGAACTCTCATATTTAAAGAATCAT
GTGGACTTCGACAGCAGTCATCTTAACATTATTCGCTTGGATTTGCAATT
GTGAAGGTATGACTTACTCTTCTTCATAATGTATATTTTACTTAAAATGC
CGCGCAACTACCGGTTAATGGGTAACTGAGTAAGCAAGGGTGAAAAATAG
AGAAAAAATACGGACATGTACTGACACGGTTATACCCTTTTCTCGTTATT
ATTGGGACACGCAGTGGCAGCACCGTTGAGAACATATTGATAAGCCTGAA
AATCACTCAAAAGCAAGAAAAGGAGAGTCTCAGCCGAAACTTTATAATGG
TCTTTATAATACTATCAATGAAAAAGTGTAACATAACTAGACTAGAAGAG
TACCTATAGCAATAAAAATTTTTAAGCCACTCATACTGCGGTAGACAATA
TTTTCGAAACGCGTGATCTACTTTTGTATTGATTTGTTAAAGTTGTGTCA
ATGCACCATAATTAAGGACCAGATCCAATACCGGGACCAGCCCCGAGCAA
CGATGTAAAAATAATAGATAACCAACTACCTCTAGAAGGCACTTCTCCCA
AGAGAACAACCATTGTTTTCCTATTGAAATGAGCACNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGTGATGAAGTTTAAAGACAATGAACTGCATCTATCTACTTT
CTTTATTTTCAGTACAATGGGAGATGCTTGGCAACAATATCTGTTACGGC
GCACGCCGCGGAACATACGGAACAATCAAGCTTGAAAAAGAAGGATTTTT
ATTTGCACTTAAATTTGAACACGTAAGCGGTTACTTGACGTGCGATCGTG
GACGTAACACGTATTATGCAAGCAACTGGGGATGTCACGCTGACGGAGAT
CGTAACGGGATCACGAACAAAGACATTGGTACGTTTCTGACGGACGAATC
GGATGAAATCATTTTTCCCGCTGGAGCTAAAGAATTATCACAGTGGCAAG
AAAATCCATACTACAGATTACCAGGATACAAAGGTAATACATAGTCCGTC
CCTGAATTTATTTTGATATAGGGGATGCGTATCGTGTATGAAATTTCCGT
CCGAGAGTTACTTGGGGTAACAAAAAGTTGCATGAATTTACATAATTTCG
TCATATCCTATGAAAATGAAGGAGGCCTGGAAAACCCAAGTTATGAAGCC
CCAAGTTATGAAAAACCCGAGACGTCATATTTAGCAATAGAAGACTTCCA
CTTTCAAAACAATGTTTTCTGATTTATGTACAGGTGATTCCAAGGACCTC
GTTATGGCCTGTCATTGTTCACCGATGTACGCTCGTGTTGGTCAAGAATT
ACGTATCTGGTACGGCGAAGCACTTTTCAATCGAATGATTCGTTCTCGAC
GATATGACGAACGAGATAATGGTGGTCAACATTGTATCAATATTTACGCC
AAGTTTGGTGGATTATAAGATGTGTGTCACTCCTTAATATTGAGTTTATG
TATCTGTGTTTTTCTGCGGCGGAGACGGTCAGCTTCTGCTTTGTCTACAT
CCTGACTGACTAAGGACGACGGTAAGTCAGTACTTTTACCGTCTTCGATT
TTGCCGGTCAAAGCTTTGGTTTTTTTTCCAAATCGGCCCAGCCACTCAGC
CGTCCTTAATGAAGCAAATACATAAACTCGTTAATATTTTTAGATGGATT
TAGAAGCTATTTTGAACTCTCCATTTTCGTAGTTGAGCAAACCTCAATAT
TTGCTTGCTTTGGAGCTGTAATATACACGTTTTTCTTTTTTTAAGAAACA
CACTTTTAAGAAACACGAGGCTCAGAATGTCTAAAAACTAAGAAACATCT
AAGAAACATGCTGAGGCTGAGAATGAGAAAATAACATTTTTTAATTCGGT
TTTTTTAAGAACCTTCCAATCCAGCCTTTCATATAAGGCTGATTATGTCA
AAAAGTTTAGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCGATTTC
TTAAGAAACATTGAGGCTACTTGGTAAAACTAGTTTCTTAAAAAAAAACG
TGTAACTTTGATACCAAACTCTAATACCTATTATTTGTTTTTTAATGATT
TTTTAATTACTTTTTATTTTTGTTGATTATTTTGTGATATATTTTTATTT
TCTCAAATATAAATAAATTATTACCGCCGTAAGATTTTTCTTAAGAACGG
CTTACCTATAAA

Coding sequence (CDS) from alignment at scaffold_41:374673..377334-

>TCONS_00064210 ID=TCONS_00064210|Name=TCONS_00064210|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_41:374673..377334- (Clytia hemisphaerica)
GTGATTCCAAGGACCTCGTTATGGCCTGTCATTGTTCACCGATGTACGCT
CGTGTTGGTCAAGAATTACGTATCTGGTACGGCGAAGCACTTTTCAATCG
AATGATTCGTTCTCGACGATATGACGAACGAGATAATGGTGGTCAACATT
GTATCAATATTTACGCCAAGTTTGGTGGATTATAATACAATGGGAGATGC
TTGGCAACAATATCTGTTACGGCGCACGCCGCGGAACATACGGAACAATC
AAGCTTGAAAAAGAAGGATTTTTATTTGCACTTAAATTTGAACACGTAAG
CGGTTACTTGACGTGCGATCGTGGACGTAACACGTATTATGCAAGCAACT
GGGGATGTCACGCTGACGGAGATCGTAACGGGATCACGAACAAAGACATT
GGTACGTTTCTGACGGACGAATCGGATGAAATCATTTTTCCCGCTGGAGC
TAAAGAATTATCACAGTGGCAAGAAAATCCATACTACAGATTACCAGGAT
ACAAAGATGTGGACTTCGACAGCAGTCATCTTAACATTATTCGCTTGGAT
TTGCAATTGTGAAGGTGATTCCAAGGACCTCGTTATGGCCTGTCATTGTT
CACCGATGTACGCTCGTGTTGGTCAAGAATTACGTATCTGGTACGGCGAA
GCACTTTTCAATCGAATGATTCGTTCTCGACGATATGACGAACGAGATAA
TGGTGGTCAACATTGTATCAATATTTACGCCAAGTTTGGTGGATTATAAT
ACAATGGGAGATGCTTGGCAACAATATCTGTTACGGCGCACGCCGCGGAA
CATACGGAACAATCAAGCTTGAAAAAGAAGGATTTTTATTTGCACTTAAA
TTTGAACACGTAAGCGGTTACTTGACGTGCGATCGTGGACGTAACACGTA
TTATGCAAGCAACTGGGGATGTCACGCTGACGGAGATCGTAACGGGATCA
CGAACAAAGACATTGGTACGTTTCTGACGGACGAATCGGATGAAATCATT
TTTCCCGCTGGAGCTAAAGAATTATCACAGTGGCAAGAAAATCCATACTA
CAGATTACCAGGATACAAAGATGTGGACTTCGACAGCAGTCATCTTAACA
TTATTCGCTTGGATTTGCAATTGTGAAGGTGATTCCAAGGACCTCGTTAT
GGCCTGTCATTGTTCACCGATGTACGCTCGTGTTGGTCAAGAATTACGTA
TCTGGTACGGCGAAGCACTTTTCAATCGAATGATTCGTTCTCGACGATAT
GACGAACGAGATAATGGTGGTCAACATTGTATCAATATTTACGCCAAGTT
TGGTGGATTATAATACAATGGGAGATGCTTGGCAACAATATCTGTTACGG
CGCACGCCGCGGAACATACGGAACAATCAAGCTTGAAAAAGAAGGATTTT
TATTTGCACTTAAATTTGAACACGTAAGCGGTTACTTGACGTGCGATCGT
GGACGTAACACGTATTATGCAAGCAACTGGGGATGTCACGCTGACGGAGA
TCGTAACGGGATCACGAACAAAGACATTGGTACGTTTCTGACGGACGAAT
CGGATGAAATCATTTTTCCCGCTGGAGCTAAAGAATTATCACAGTGGCAA
GAAAATCCATACTACAGATTACCAGGATACAAAGATGTGGACTTCGACAG
CAGTCATCTTAACATTATTCGCTTGGATTTGCAATTGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040257XLOC_040257Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064210-proteinTCONS_00064210-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064210-exon-scaffold_41-1575043694:377129..377334TCONS_00064210-exon-scaffold_41-1575043694:377129..377334Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1575043694:375852..376172TCONS_00064210-exon-scaffold_41-1575043694:375852..376172Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1575043694:375115..375601TCONS_00064210-exon-scaffold_41-1575043694:375115..375601Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1575043694:374673..374835TCONS_00064210-exon-scaffold_41-1575043694:374673..374835Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1510915933:377129..377334TCONS_00064210-exon-scaffold_41-1510915933:377129..377334Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1510915933:375852..376172TCONS_00064210-exon-scaffold_41-1510915933:375852..376172Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1510915933:375115..375601TCONS_00064210-exon-scaffold_41-1510915933:375115..375601Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1510915933:374673..374835TCONS_00064210-exon-scaffold_41-1510915933:374673..374835Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1491911889:377129..377334TCONS_00064210-exon-scaffold_41-1491911889:377129..377334Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1491911889:375852..376172TCONS_00064210-exon-scaffold_41-1491911889:375852..376172Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1491911889:375115..375601TCONS_00064210-exon-scaffold_41-1491911889:375115..375601Clytia hemisphaericaexon
TCONS_00064210-exon-scaffold_41-1491911889:374673..374835TCONS_00064210-exon-scaffold_41-1491911889:374673..374835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:374673..377334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.87372	2.62902	119.368	150.073	333.058	277.116	172.333	318.522	0.0866515	0	1.39007	0.000513816	30.6665	37.2594	0	0	52.7391	57.2744	104.647	116.821	308.986	303.09	28.4856	48.165	368.58	367.186
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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