|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064202 ID=TCONS_00064202|Name=TCONS_00064202|organism=Clytia hemisphaerica|type=transcript|length=1872bp
aataaCTAAGCAGACTCAATACGACGTTCAGCTTAATAAAGCCTATAAAC
TAAGCGCTTTTATTCAGGCAACAAtaccaaaaaattatttctacatTGTA
AAACTACTAATTTAACAGGAAAGGGAAAATATATAGCaaataaattttac
ttttagatACTAAAAATGTAACACACAAAATTAAACCCAACagttaaaaa
taaatattcatcATTGATAACAGttctaaaaatattaaatttcctAGAAG
AACTAAacaaatagaccttatcggagtttttgatttttctaaaaaagcga
tgcattgtgggattgtttcgggggtattaaaACAGAATTCCcttgaggaa
ttcctaagagatttctattgtaatacccccgaaacaatcccacaatgcat
cgcttttttagaaatatcaaaaactccgataaggtctaatgaccataaaa
ataaaaaaggtttttgcCACAAGAAAGAGGTTCAATCATAATTGTCTTTA
TTCAGTCCTATATTCAGACTTCTTCTTACTGGTCAAGATTTCGTAAGCTT
CTTGTATTTCCATGAACTTTTTCTCAGCATAAGCACGATCCTCACCCTTG
TATTTATCAGGGTGCCATTTCCTTACTAATTTTTTGTAAGTCTTTTTAAT
CTCTTCGCGCGTCGTTGTCTCTGTAACATCTAAAACTTTNcttttttaga
aaaatcaaaaactccgataaggtctattgaccataaaaataaaaaaggtt
tgTGCCACAAGAAAGGGGTACAACAATCATAATTGTCTTTATTCAGTCCT
ATATTCAGACTTCTTCTTACTGGTCAAGATTTCGTAAGCTTCTTGTATTT
CCATGAACGTTTTCTCAGCATAATCACGATCCTCACCCTTGTATTTATCA
GGGTGCCATTTCCGTACTAATTTCTTGTAAGTCTTTTTAATCTCTTCGCG
CGTCGTTGTCTCTGTAACATCTAAAACTTTACGCGCGTTAGCTTCGCCTT
TAGGATCCAATGCTTTTACGAGTTCATCGTACAAGGTACGCCATCCGTTT
CGTTGTCCTTCTTCGTAAAGCTGCCATAATGTGTTCTTGAATTCTAACCA
AGCAGGCGATTTAAAGAAATGATTTACTGAATCCCTGATTTTGATCGTTT
CGCCGTCTTCCGTAGTAATCTCGGCGTTGAAATATAAGAAACTGCCCCAT
AAAGTAAAAAACAAGCCCATACATAATGAAAACACCATCATACGTTTACA
TAAAGATCGTTTCTGAGAATAAGTTCTTCTGTATTCTCGGAAAtgattga
aaacgaaagtggtacCCAGTACGCAATACATGTAGTTGACATAATCAGGG
CTAAAATATTGTAAAAGGTAATACACTATTACAGATCCAATATACGGTTT
CCAAAAACCACCTTGTTCGCGGCCAATATTTCCAATCAAATGTACCCCCG
TCGTCATTCCTAAACACACCAGAAAAATCTCTAGAGTTTGTGGTGTTTCA
GGGGGTAAAGCTAGTTTGACTAGTCCACCGTAAAAATAACCCATCATAAG
TTGTCCTGAAAATCGAACAATATTAAATTTGGGGTATTTCCTCAATTTCA
TTTGATTGGTTAGTTCTTGCATAAAATGCGGCTCCTCGTTGACGTCATCG
ACGTAATCCGGAATTCGCCACAAATCTCGAAACCATCCGAGAAAGAAAAT
CCCACCAAGGGTGGACCACCATGTGAATGCTTGTCGGTCACGCCCTAAGT
AGAAATGGTGTAAACCAAGCCATCCAAAAAACGCCCATAACAGGTAGGTG
ATGAACAAGCTTTTCTGTTgtgtcattttgtttttgttttttcttttata
tgttcattatttctagctataa Run BLAST on NCBI transcript from alignment at scaffold_41:318787..320658- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064202 ID=TCONS_00064202|Name=TCONS_00064202|organism=Clytia hemisphaerica|type=transcript|length=1872bp|location=Sequence derived from alignment at scaffold_41:318787..320658- (Clytia hemisphaerica)
AATAACTAAGCAGACTCAATACGACGTTCAGCTTAATAAAGCCTATAAAC
TAAGCGCTTTTATTCAGGCAACAATACCAAAAAATTATTTCTACATTGTA
AAACTACTAATTTAACAGGAAAGGGAAAATATATAGCAAATAAATTTTAC
TTTTAGATACTAAAAATGTAACACACAAAATTAAACCCAACAGTTAAAAA
TAAATATTCATCATTGATAACAGTTCTAAAAATATTAAATTTCCTAGAAG
AACTAAACAAATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGA
TGCATTGTGGGATTGTTTCGGGGGTATTAAAACAGAATTCCCTTGAGGAA
TTCCTAAGAGATTTCTATTGTAATACCCCCGAAACAATCCCACAATGCAT
CGCTTTTTTAGAAATATCAAAAACTCCGATAAGGTCTAATGACCATAAAA
ATAAAAAAGGTTTTTGCCACAAGAAAGAGGTTCAATCATAATTGTCTTTA
TTCAGTCCTATATTCAGACTTCTTCTTACTGGTCAAGATTTCGTAAGCTT
CTTGTATTTCCATGAACTTTTTCTCAGCATAAGCACGATCCTCACCCTTG
TATTTATCAGGGTGCCATTTCCTTACTAATTTTTTGTAAGTCTTTTTAAT
CTCTTCGCGCGTCGTTGTCTCTGTAACATCTAAAACTTTNCTTTTTTAGA
AAAATCAAAAACTCCGATAAGGTCTATTGACCATAAAAATAAAAAAGGTT
TGTGCCACAAGAAAGGGGTACAACAATCATAATTGTCTTTATTCAGTCCT
ATATTCAGACTTCTTCTTACTGGTCAAGATTTCGTAAGCTTCTTGTATTT
CCATGAACGTTTTCTCAGCATAATCACGATCCTCACCCTTGTATTTATCA
GGGTGCCATTTCCGTACTAATTTCTTGTAAGTCTTTTTAATCTCTTCGCG
CGTCGTTGTCTCTGTAACATCTAAAACTTTACGCGCGTTAGCTTCGCCTT
TAGGATCCAATGCTTTTACGAGTTCATCGTACAAGGTACGCCATCCGTTT
CGTTGTCCTTCTTCGTAAAGCTGCCATAATGTGTTCTTGAATTCTAACCA
AGCAGGCGATTTAAAGAAATGATTTACTGAATCCCTGATTTTGATCGTTT
CGCCGTCTTCCGTAGTAATCTCGGCGTTGAAATATAAGAAACTGCCCCAT
AAAGTAAAAAACAAGCCCATACATAATGAAAACACCATCATACGTTTACA
TAAAGATCGTTTCTGAGAATAAGTTCTTCTGTATTCTCGGAAATGATTGA
AAACGAAAGTGGTACCCAGTACGCAATACATGTAGTTGACATAATCAGGG
CTAAAATATTGTAAAAGGTAATACACTATTACAGATCCAATATACGGTTT
CCAAAAACCACCTTGTTCGCGGCCAATATTTCCAATCAAATGTACCCCCG
TCGTCATTCCTAAACACACCAGAAAAATCTCTAGAGTTTGTGGTGTTTCA
GGGGGTAAAGCTAGTTTGACTAGTCCACCGTAAAAATAACCCATCATAAG
TTGTCCTGAAAATCGAACAATATTAAATTTGGGGTATTTCCTCAATTTCA
TTTGATTGGTTAGTTCTTGCATAAAATGCGGCTCCTCGTTGACGTCATCG
ACGTAATCCGGAATTCGCCACAAATCTCGAAACCATCCGAGAAAGAAAAT
CCCACCAAGGGTGGACCACCATGTGAATGCTTGTCGGTCACGCCCTAAGT
AGAAATGGTGTAAACCAAGCCATCCAAAAAACGCCCATAACAGGTAGGTG
ATGAACAAGCTTTTCTGTTGTGTCATTTTGTTTTTGTTTTTTCTTTTATA
TGTTCATTATTTCTAGCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064202-exon-scaffold_41-1575043694:318787..320658 | TCONS_00064202-exon-scaffold_41-1575043694:318787..320658 | Clytia hemisphaerica | exon |
| TCONS_00064202-exon-scaffold_41-1510915933:318787..320658 | TCONS_00064202-exon-scaffold_41-1510915933:318787..320658 | Clytia hemisphaerica | exon |
| TCONS_00064202-exon-scaffold_41-1491911889:318787..320658 | TCONS_00064202-exon-scaffold_41-1491911889:318787..320658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:318787..320658 - |
Blast
The following BLAST results are available for this feature:
|
