TCONS_00064185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064185
Unique NameTCONS_00064185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064185 ID=TCONS_00064185|Name=TCONS_00064185|organism=Clytia hemisphaerica|type=transcript|length=2803bp
aacaatttcaacaaaatgttTCAGATCTCAAGatcaattttgttaaaatt
tctcATATTCTGCCTAAACTCTCAGTAATAGACGCAGATTTAATCAAAAT
TTACTAtgtaatcaaaatatttttcatactttcgttttcgtactTCTTGT
TTATGAAAACTTGTTTCTATGAGTTTACATATCAATCATAATGGCGTCAT
TTCGATGGCTCTTATTGGTCAATCTTTGGATTCTCTTGGCGTATGTCAAT
CTTCATGTTTTAAATTATGACTCAGTAACGGTCTGTGACGGTGTTCTCAA
AGAAATACAATGTCCCAGTGAAGAAAACATTCATGTTCTACAGGGATTTT
ATGGAAAATGGAGAAACCATGATTGTAAAGGTGAAAGCGTGGATCCTGAT
AACCTCCCCACGTGTCGTCAAGAACGATCAAAGACTTTAGGTATCGTACG
TGATTTGTGTCATGGTAAAAACAGGTGCTCACTTTTAGCGGATAAGTCAG
TATACGGAGAGCCGTGTCCCGATAATAAGTCGTACTTGTATATGACATTT
TTTTGTATGAAGAATGGACAGAAATTAAAGCATCAGAAAACGGGAAATAA
CGAGGAAGTTGTTACGGTACCGAGTCATGGATTTATCATACGGGAAGAGA
AAGTTCATTTAGAGGAAGATCGGAGGAAGAAGGAACGAGAAGACGCTAAG
CGACGGGAATTAGTCAAAATGAAAAACCCAACTTTGTTAAATCCTAATCC
GAATCCAGTAATACCAAACGGAAATCGGAAATCGGATTTCCATCGGAATC
AGAAGACAAAGAACTCGAATGTTTCAGCTTTAGAAATGGTTGTTAAAGAG
AGTGCACCGATTTTTAGTTCAATAGAAGACGCTTTAAAAGTGGAAAACAG
TTTAAAAACTGACGAAACACCAActaaaattgttgaaaagaaaacttccA
AAAAAGCTGTCGTGAAACCGAAAGCTAAAGACACTTTATCTAAACAGACG
AATTCTTCACAAGAGAATTTATTAGCGAAACAAAAGTCGATGATATTTAA
TTACATTTTGAAAACGGGATTACCGGCTAGAAAAAAGACAACGGAAAAGG
GTGCGACCGGTAGTAAAAAAACACCGAAACAGTCTGTAAAACATACGGAA
GAAGGTGCAAAGAAGAGTTTGATAAGTAGCGAGAAACATAAGAAAGTAAA
GCAACCAATTATTAAAGAGACGAGCGCGGATTTGGTCATGCCAGCAGAAA
CTATGAAAGACCACATTGCTAAGGAGTTGGAAGAAGATGcTCAGTCTCAC
ATTTCGAACGAACATATCAGTagcaataaaaacaatgatactgCATCTGC
AGAAAGCCAGTTGACACTTGGCCAAATGAGATCTGCAACTATTTGCAATG
GTGAATCCAAAATGATCCATTGCATGCCAGAAGAAGGTATCAAAATCCAA
GATGCTTTCTACGGTAAACGAACTGGGGAAGATTGTCACGGTAAAATGTC
GTACAGAGATGACGCGCCCACTTGCTCCGCCTTGGACGCGCGGGCGAACG
TAGAAGAAGcgtgtaatgataaacaatCTTGTCTCCTAACAGCGGACGAA
AACACGTACGGTAAATCTTTATGCCCGCACGTTAACAAATATCTTCAGTT
AAAGTACGCATGCGCGCCACtcgatgatgacgtcatatcaAAAGATACGA
GACCGAAACATGATGGTGTGGAACTTTCACCTCAATTGAATGAAGAAGAG
GAAGCGGTTAGTCGAACATTACAAGAATTAGCTCGAACGAACAGCACCGA
ATTGTTATGCAACGGTGAAAAGAAAACCATATCTTGTCAAAGAGATCCGG
GAGTTGCCATCCTATCTGCTTTTTATGGAAAACAGACCGGTATGGATTGT
CGAGGCGAGTTGAATTATCGAGACGATATACCTGATTGTAGTAACCCACG
TGCATTGGAGACGATCAAGTTATTgtgtgaaaatcaaaaatcgtgTGAAA
TAGCAGCAGAAAGCCCGCTTTTCGGTAAAGAAGAGTGTAATGGAATTAAT
AAATATTTAGAGGTGACTTGGGCTTGCTAAGCATTCTGGTATATGTAAAC
ACAAACTGAGAGAGTTCAAATTCTTGGGTGACATGATACACATATACACA
CTATGAGTGTACCGCATTTTTCATTGGTATAGCTCTGATTATTAAAGAAA
ATACAGAATGACGAGGCTCAATAAACTTTAGACTGTTCTTTACTTTCGTA
CATGTCACATGGCTAATTTTGGTATCCTATaacatatttttggaaagatt
GATATAGAGAAAGAGTTTTGGAAGCAAGCTCAATTTAGAAACAATTCAAC
AATAATATAACTGAATTTTTGAAACAGGACTAAACcacaattttcatttt
gtactACTCGATAATCGATGAAAATTTCATCGAAAATAACCGCAGAAATG
AGTAGTAGTGTGGTGAATGAATACTAAATTGTTCTTCCAAAATCATGTTT
TTCATATGACGTGATGAATGGTGTagaaaaaatggagaaaataaatgact
gattttgttcatttttataTAAATGGTGTTGTACACAGAATTCTAGAATA
CGGTTGTTAGCTGCTTTAAAAGGGCTTGGTGTGTGCTGTTTCAGGCCTGG
CGGAGCGTGTAGACTttggagacttcagcctccccacttttgagcaaatt
agattttttttctcaaatttcaagcgaattttatctcatttgagtcttca
gcctccccacttttccGGTTGTCCTGCCGGTCCTGTGTGTTTGCGTTcac
agt
Run BLAST on NCBI

transcript from alignment at scaffold_41:655924..660031+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064185 ID=TCONS_00064185|Name=TCONS_00064185|organism=Clytia hemisphaerica|type=transcript|length=4108bp|location=Sequence derived from alignment at scaffold_41:655924..660031+ (Clytia hemisphaerica)
aacaatttcaacaaaatgttTCAGATCTCAAGatcaattttgttaaaatt
tctcATATTCTGCCTAAACTCTCAGTAATAGACGCAGATTTAATCAAAAT
TTACTAtgtaatcaaaatatttttcatactttcgttttcgtactTCTTGT
TTATGAAAACTTGTTTCTATGAGTTTACATATCAATCATAATGGCGTCAT
TTCGATGGCTCTTATTGGTCAATCTTTGGATTCTCTTGGCGTATGTCAAT
CTTCATGGTATGTCTCTCAATATTATTTGATGGCTTTGATATTATCATTT
TTTGTCTCTATCCGCATATATTTTGTCCCAAGAGGAGCACTTAGGTTGTT
GAAGACTGGTTTCTCCCCGTCAAATAATGACAAAATGGTATCTAAGCCCA
TTTAATATCCTATTTGCATTGCTTTTAGGCAGATCTTTATTTATGTAGTT
TTTGCACATAAACTTTATTTAATTCGTAATGATGAGAATTTTTACAATGT
TTTATCTTTCAGTTTTAAATTATGACTCAGTAACGGTCTGTGACGGTGTT
CTCAAAGAAATACAATGTCCCAGTGAAGAAAACATTCATGTTCTACAGGG
ATTTTATGGAAAATGGAGAAACCATGATTGTAAAGGTGAAAGCGTGGATC
CTGATAACCTCCCCACGTGTCGTCAAGAACGATCAAAGACTTTAGGTATC
GTACGTGATTTGTGTCATGGTAAAAACAGGTGCTCACTTTTAGCGGATAA
GTCAGTATACGGAGAGCCGTGTCCCGATAATAAGTCGTACTTGTATATGA
CATTTTTTTGTATGAAGAATGGACAGAAATTAAAGCATCAGAAAACGGGA
AATAACGAGGAAGTTGTTACGGTACCGAGTCATGGATTTATCATACGGGA
AGAGAAAGTTCATTTAGAGGAAGATCGGAGGAAGAAGGAACGAGAAGACG
CTAAGCGACGGGAATTAGTCAAAATGAAAAACCCAACTTTGTTAAATCCT
AATCCGAATCCAGTAATACCAAACGGAAATCGGAAATCGGATTTCCATCG
GAATCAGAAGACAAAGAACTCGAATGTTTCAGCTTTAGAAATGGTTGTTA
AAGAGAGTGCACCGATTTTTAGTTCAATAGAAGACGCTTTAAAAGTGGAA
AACAGTTTAAAAACTGACGAAACACCAActaaaattgttgaaaagaaaac
ttccAAAAAAGCTGTCGTGAAACCGAAAGCTAAAGACACTTTATCTAAAC
AGACGAATTCTTCACAAGAGAATTTATTAGCGAAACAAAAGTCGATGATA
TTTAATTACATTTTGAAAACGGGATTACCGGCTAGAAAAAAGACAACGGA
AAAGGGTGCGACCGGTAGTAAAAAAACACCGAAACAGTCTGTAAAACATA
CGGAAGAAGGTGCAAAGAAGAGTTTGATAAGTAGCGAGAAACATAAGAAA
GTAAAGCAACCAATTATTAAAGAGACGAGCGCGGATTTGGTCATGCCAGC
AGAAACTATGAAAGACCACATTGCTAAGGAGTTGGAAGAAGATGGTAact
attatatttttcaacaagGGAGAAAGTTTTTAAACAATGAATCTGTTGCA
CCTTATTCGGAAATCTTCACTAAGAAACTAGATTATTTTTAAATGTTCTA
CATAGCTCCATTTTTTGTCTTATTGATGTTGATACAAAATACGTTGATAC
TTAAATATATGACCCCTTTGCTCCTTTCCATGGTTATCCATTTTTAATGA
TTGTGccattttaagctaaaaagtgcGTCCAAAAATAGTTCGAGAGAAAT
ATTTTCAGCCTTTGAGGGTTTTCTCTTCTTAACGCTATGGTCGTACTTCA
AGCTGTCCATAGTGTTCTGAGGTTGTTCAATGCAAGTAAAACTTTTGACC
GGCGTTTGCCAAGACTAGCAATCTAAGGGAttgtattcttaaatttttcc
taccctgtttttttttttcgtttagcTCAGTCTCACATTTCGAACGAACA
TATCAGTagcaataaaaacaatgatactgCATCTGCAGAAAGCCAGTTGA
CACTTGGCCAAATGAGATCTGCAACTATTTGCAATGGTGAATCCAAAATG
ATCCATTGCATGCCAGAAGAAGGTATTTTGATTGGCTGAATTACCTTTCT
TTCCCTACACCTAAACTCTTGACCCTAGTGTTCTAAAAgttctggaattt
tttaatttttccgacATTCATTCATACTTTCTGTAAGGGGCAAAATATAA
ATGTGTCGCGTGGAGAGTACGGGAAAACAAGAGCAAAAGaatgaactttc
aaaaatatagaATGTACTCTAAATGGAAAAATTTGGCAAGGCGTGACTTG
TTGTGTTGCCTTTTCATTTGATACGGTTAATTGAGATCGCAGGAAACAAG
CAAATTTATTGTTAAAtgtattttactttttagaatttatgaTTATTTAA
AAACCTTTCTTCCCAGGTATCAAAATCCAAGATGCTTTCTACGGTAAACG
AACTGGGGAAGATTGTCACGGTAAAATGTCGTACAGAGATGACGCGCCCA
CTTGCTCCGCCTTGGACGCGCGGGCGAACGTAGAAGAAGcgtgtaatgat
aaacaatCTTGTCTCCTAACAGCGGACGAAAACACGTACGGTAAATCTTT
ATGCCCGCACGTTAACAAATATCTTCAGTTAAAGTACGCATGCGCGCCAC
tcgatgatgacgtcatatcaAAAGATACGAGACCGAAACATGATGGTGTG
GAACTTTCACCTCAATTGAATGAAGAAGAGGAAGCGGTTAGTCGAACATT
ACAAGAATTAGGTGAGTTGATGCTATCATTCAGAGTTTGTCAGAATCCGA
TTTGAGAGATGTTTATAAATTTATAATCtaaaggaattttttttgttgaa
gaaatttcattagaGTTAtctagttttttttcaaatatgatATCACCCTT
TTCCATATGTAAGCCAACCCATCTTTGTGAGTGTTAAGTAATTTAAATGT
TTCTTTCTAGTTCGGTCATGCAACCATCATCCCCTACGTATGTTCTGGAA
AGATTTACTTGTTTCATTCCTAACATTTATTTTCAGCTCGAACGAACAGC
ACCGAATTGTTATGCAACGGTGAAAAGAAAACCATATCTTGTCAAAGAGA
TCCGGGAGTTGCCATCCTATCTGCTTTTTATGGAAAACAGACCGGTATGG
ATTGTCGAGGCGAGTTGAATTATCGAGACGATATACCTGATTGTAGTAAC
CCACGTGCATTGGAGACGATCAAGTTATTgtgtgaaaatcaaaaatcgtg
TGAAATAGCAGCAGAAAGCCCGCTTTTCGGTAAAGAAGAGTGTAATGGAA
TTAATAAATATTTAGAGGTGACTTGGGCTTGCTAAGCATTCTGGTATATG
TAAACACAAACTGAGAGAGTTCAAATTCTTGGGTGACATGATACACATAT
ACACACTATGAGTGTACCGCATTTTTCATTGGTATAGCTCTGATTATTAA
AGAAAATACAGAATGACGAGGCTCAATAAACTTTAGACTGTTCTTTACTT
TCGTACATGTCACATGGCTAATTTTGGTATCCTATaacatatttttggaa
agattGATATAGAGAAAGAGTTTTGGAAGCAAGCTCAATTTAGAAACAAT
TCAACAATAATATAACTGAATTTTTGAAACAGGACTAAACcacaattttc
attttgtactACTCGATAATCGATGAAAATTTCATCGAAAATAACCGCAG
AAATGAGTAGTAGTGTGGTGAATGAATACTAAATTGTTCTTCCAAAATCA
TGTTTTTCATATGACGTGATGAATGGTGTagaaaaaatggagaaaataaa
tgactgattttgttcatttttataTAAATGGTGTTGTACACAGAATTCTA
GAATACGGTTGTTAGCTGCTTTAAAAGGGCTTGGTGTGTGCTGTTTCAGG
CCTGGCGGAGCGTGTAGACTttggagacttcagcctccccacttttgagc
aaattagattttttttctcaaatttcaagcgaattttatctcatttgagt
cttcagcctccccacttttccGGTTGTCCTGCCGGTCCTGTGTGTTTGCG
TTcacagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040244XLOC_040244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064185-exon-scaffold_41-1491911889:655924..656180TCONS_00064185-exon-scaffold_41-1491911889:655924..656180Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1510915933:655924..656180TCONS_00064185-exon-scaffold_41-1510915933:655924..656180Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1575043694:655924..656180TCONS_00064185-exon-scaffold_41-1575043694:655924..656180Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1491911889:656436..657467TCONS_00064185-exon-scaffold_41-1491911889:656436..657467Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1510915933:656436..657467TCONS_00064185-exon-scaffold_41-1510915933:656436..657467Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1575043694:656436..657467TCONS_00064185-exon-scaffold_41-1575043694:656436..657467Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1491911889:657899..658045TCONS_00064185-exon-scaffold_41-1491911889:657899..658045Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1510915933:657899..658045TCONS_00064185-exon-scaffold_41-1510915933:657899..658045Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1575043694:657899..658045TCONS_00064185-exon-scaffold_41-1575043694:657899..658045Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1491911889:658390..658734TCONS_00064185-exon-scaffold_41-1491911889:658390..658734Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1510915933:658390..658734TCONS_00064185-exon-scaffold_41-1510915933:658390..658734Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1575043694:658390..658734TCONS_00064185-exon-scaffold_41-1575043694:658390..658734Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1491911889:659010..660031TCONS_00064185-exon-scaffold_41-1491911889:659010..660031Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1510915933:659010..660031TCONS_00064185-exon-scaffold_41-1510915933:659010..660031Clytia hemisphaericaexon
TCONS_00064185-exon-scaffold_41-1575043694:659010..660031TCONS_00064185-exon-scaffold_41-1575043694:659010..660031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:655924..660031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.683363	0.41031	0.145677	0.114476	3.93083	3.69794	8.95282	9.15048	2.14647	1.33034	7.40077	7.94858	3.18286	2.53048	3.99575	10.41	3.82511	2.4271	0.0161236	0.0812614	1.95752	1.82988	1.40179	0.899098	0.998779	2.3942	0.523543	0.26282	0.0154674	0.0632967
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top