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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064179 ID=TCONS_00064179|Name=TCONS_00064179|organism=Clytia hemisphaerica|type=transcript|length=2500bp
ggattttttacctaggaggttaaaatttgcgcaaaatgtcttacaataga
ttaaattttcacaaaaaaataataatgtgTATGTTAAAAATAAGGATTCT
AAAAGCCAAGAGATTTTAATATCAGTTCTGGCTTGCTTCATATGATCATC
TAGTTCATGTAATATCTTAGAATGGAGCTATGCTCTAATTATTATTGTGC
AAAAAGTTTGGATAAAGCATCACTGATTTATCAGTTCTTATCAACAATGT
TCTACAGCAGAAAATAAGTTTCAGGAAGTATATCTAAAGATGACgtttat
aaagtaaacaaactaTGATATATATTTATCTTATTCTTAAAAGTTGAATT
GATAATTCATATAAGAGACTACTTTGCTGATTGAGTTGATTTTGATGATG
GGACATGATGTGGTTTTTGATTGATTCATTATATTGCTCTTAAGAATGaa
ttttcattgaaatggtCAGCTAGGAAACATTGAGGTTACATATTCAATAA
CTTGAAGAATGGTGAAAACAACAATAACTGCTACAGGCTACGGTGTATTA
GCCCATGATGGACCATCTACAAACCAGCGCCCAGATTTTACTCATTCTTA
TGGATCTTTGGATAATAATTTTGCACATAATAGTACTTCAACTACCGACA
GttGCCACCGCTGGTTTGTTGAAGGTCTAGATAATGATTATGAGATTGAG
TCTGCTTATACTGCTCATGGAACACCCAGACAATCAAACCTTGGCAATTA
CCAAGATTTTTATAATGATGATAGCTACATCACCGACAATCCTGACTCGT
CACTTCTGGATCCTCATTATGTGGACAATCTGTCTGGGGAAAATCAACAT
TTGATTGATTCATACACCACAAACGGGCTTGCCTCAACTCCACTCGTAGC
TTGGAATTTAACCAACTTGCTTTTAAGTACAAGTTTATTGGCATTCCCAT
TCATTGTGCGGCAAGCTGGTTATATTGTTTTACCAATTGCATTCTTGATA
GCAATGATGCTGAATTATACTAGTAGAATACTTATTGATTTGATGTATGA
AAATCTTCCTGAGTATGACAACCAAAGAGTACGCGTCCGAAAACATATCA
CTGAAATAGGTAGAGAGGTCTTCAACTCTGAGAAAGGGGCAAAAGTAGTT
CACGTGGTACAAATCATAGAAATGTTATGCATAtgtattttgaatatttg
tGTCCTTGGTCAACTTGGACATGAGATATCAAACTATAATGTTCAGCTGT
GTACCGCTATTGCTGCATTGTTTGCTTTTCCAACATTCTTTATCCGGAAG
CTTGCCATCATTGGCTGGTTACAGACAATTGGTGTTATATCTTTGGCAAT
TGGTATAATGCTGATTCAAGGCTGGTGTTTGGTACATGCTGAAAAGTTCA
AAACAGATAACATACCTATCGTACAATGGCACAAACTACCTATAGCTATT
GGTGTTGTTGTTTATGCTTATGGTATACAAGGTGTGTTGCCGGGAATGGA
AGAACAGATGAGAAAACCGCAACAATTTGGAAGAGTCATCAACTGGACTT
TTGGTGTATCCTTTATACTACAGTGTGTATTCAGTTTAACCAACGCCATG
TATTATGGAGAGGAAACAGCACAAGTTATTGTGATTGATATGAAAGACCA
TTTTGAATTGGGAATCACTTCAGCTTGTTTTATTGGGATTTCTATATTAT
CACATTTCTCTTTACCGACACTTGTGGTTATGGAGAGTTTGGACAATGCT
ATCGTTAAAACTTCATCGTGCTGCCCAACTCGTCAGCAGACTCTACACAC
ATTCCTGATGGTGTTATTAAGAATCGGTATCATTGCCTTGTGTCTTGGAT
TAGCTCTTGTTTTACCGTATTTTGCATATTTAATGGGATTCATAGGTTCT
TCAATAACCTTAACAATGTGTCTGATTATTCCCTGTACGTTTCATTTGAA
GATGAGATATGATACATTGAGGTTGCACCAAATATGTTTAGATGTTGTCA
TCATCGTATCCAGTCTGGTTTGTCTTGGTGCTGGttcttacttttctttt
gaatctATTTATTATGATTGGGTCAATGGTTCTTATAATTGAACGCTACA
ATTAGAATGGATTGGACTTGGAATGTATTTAAGCATTGGGAGAGAATTAT
TTTATACTGATAGCTAGTTGATACAATATTAAAAAGCTAGATGAAatata
aattatatttttcatagaaattttgcgaattttatGGGAACTTTGTTTcc
ttatttcattgttttctggACCAATCGAGAAGACGTTTGATGAAAAGTGA
TTCGGTTAAAAATCCCCGTGAAATCACTTCCCTCTAAAGCTGACAAATAT
TTCTTGTCATCTAGGTAATTTCTGTTAAAAATTCTTAAAGTAAATATCGT
TTTCTATTATGAATttaacttattaaaaaaatgtaaatatttttctaaat
acacctcttatttttgtttataaacaAAGTTTCACTTTTTGTTTTCCAAG Run BLAST on NCBI transcript from alignment at scaffold_41:636793..640330+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064179 ID=TCONS_00064179|Name=TCONS_00064179|organism=Clytia hemisphaerica|type=transcript|length=3538bp|location=Sequence derived from alignment at scaffold_41:636793..640330+ (Clytia hemisphaerica)
ggattttttacctaggaggttaaaatttgcgcaaaatgtcttacaataga
ttaaattttcacaaaaaaataataatgtgTATGTTAAAAATAAGGATTCT
AAAAGCCAAGAGATTTTAATATCAGTTCTGGCTTGCTTCATATGATCATC
TAGTTCATGTAATATCTTAGAATGGAGCTATGCTCTAATTATTATTGTGC
AAAAAGTTTGGATAAAGCATCACTGATTTATCAGTTCTTATCAACAATGT
TCTACAGCAGAAAATAAGTTTCAGGAAGTATATCTAAAGATGACgtttat
aaagtaaacaaactaTGATATATATTTATCTTATTCTTAAAAGTTGAATT
GATAATTCATATAAGAGACTACTTTGCTGATTGAGTTGATTTTGATGATG
GGACATGATGTGGTTTTTGATTGATTCATTATATTGCTCTTAAGAATGGT
AAGTAAAACTTTATCAAAGTAATTTGCAATGATCAAACAAAATGAATAAT
CTTATTTTCAGACATGTTCAGACATTCTATTGAATGTGATTATCATCACA
AGGTTTCATTAGTCTCTATGCTCTACTTAAAGTCACAGGTTTTTCCAATG
CCAATAATGGGAGACTATTGTTTTTCTATTGGCAATCAACTTTTTGTTGT
CTTCTCATGTTTAAAACAAATACTAAGTCATGCTTTCTTGAATGCCTATC
ATAATGATAAAACCTGATACTGTTGTTGATTTTATGTAGAAGTTAAATGT
GAAAAGatttgttttgaagaaaaatttcacATGTATCGTGCCAATTTATA
TAAAATACATGCCTACCAATCATGCTATCAccttttctttatatttttct
tatgaTGTTTTGACAAGGGCAGATGCAGAATCATTATAATGTGACCTTAT
GTTGAAACTCTGTCACATTGTTTTTACAGTTTCTTTTACTACTATCCaac
ttttagaattttcattgaaatggtCAGCTAGGAAACATTGAGGTTACATA
TTCAATAACTTGAAGAATGGTGAAAACAACAATAACTGCTACAGGCTACG
GTGTATTAGCCCATGATGGACCATCTACAAACCAGCGCCCAGATTTTACT
CATTCTTATGGATCTTTGGATAATAATTTTGCACATAATAGTACTTCAAC
TACCGACAGGTATACTGTGCTTAAAATTAGAAtgtctttttccaaaaatc
aaaaagtttagtTAACATATGTAAAATAATCAGATTGTAAGCGTTTGTAC
ATGGTCGTATTATATGCACTTTTTTGATGTTCGCTACACATTTGCTATTG
ATTTTAAAGCTAGAAAATAGGGCTTTTGAGGCATAATTTTCTTTACACAA
TGTTACCACTTTTCAATCGTTAGGGCAAAAACTGTCCAGATACATCTCTG
TATTGCCAGGTTTCTGTTAATATTCACAAAACAACACTGCTAACATGATA
AATCATtcctctttcttctttttagttGCCACCGCTGGTTTGTTGAAGGT
CTAGATAATGATTATGAGATTGAGTCTGCTTATACTGCTCATGGAACACC
CAGACAATCAAACCTTGGCAATTACCAAGATTTTTATAATGATGATAGCT
ACATCACCGACAATCCTGGTAATAAATAAAGACttcttaaaattcatttt
tcaaagatcAAAGTATGTTTGTGAATTCACAGCAAAAGAAGTGTTGCATC
TTGTTTTTTTCTATTAGGAGGTTCTATACTTCCAAAAaacttttgttaaa
aaaaaatgtttttcagtgGTTGAGTCTAGAAATATCAGAGTTTCAATTCA
AAAttcgtttcattttctttgtttctctTTAGACTCGTCACTTCTGGATC
CTCATTATGTGGACAATCTGTCTGGGGAAAATCAACATTTGATTGATTCA
TACACCACAAACGGGCTTGCCTCAACTCCACTCGTAGCTTGGAATTTAAC
CAACTTGCTTTTAAGTACAAGTTTATTGGCATTCCCATTCATTGTGCGGC
AAGCTGGTTATATTGTTTTACCAATTGCATTCTTGATAGCAATGATGCTG
AATTATACTAGTAGAATACTTATTGATTTGATGTATGAAAATCTTCCTGA
GTATGACAACCAAAGAGTACGCGTCCGAAAACATATCACTGAAATAGGTA
GAGAGGTCTTCAACTCTGAGAAAGGGGCAAAAGTAGTTCACGTGGTACAA
ATCATAGAAATGTTATGCATAtgtattttgaatatttgtGTCCTTGGTCA
ACTTGGACATGAGATATCAAACTATAATGTTCAGCTGTGTACCGCTATTG
CTGCATTGTTTGCTTTTCCAACATTCTTTATCCGGAAGCTTGCCATCATT
GGCTGGTTACAGACAATTGGTGTTATATCTTTGGCAATTGGTATAATGCT
GATTCAAGGCTGGTGTTTGGTACATGCTGAAAAGTTCAAAACAGATAACA
TACCTATCGTACAATGGCACAAACTACCTATAGCTATTGGTGTTGTTGTT
TATGCTTATGGTATACAAGGTGTGTTGCCGGGAATGGAAGAACAGATGAG
AAAACCGCAACAATTTGGAAGAGTCATCAACTGGACTTTTGGTGTATCCT
TTATACTACAGTGTGTATTCAGTTTAACCAACGCCATGTATTATGGAGAG
GAAACAGCACAAGTTATTGTGATTGATATGAAAGACCATTTTGAATTGGG
AATCACTTCAGCTTGTTTTATTGGGATTTCTATATTATCACATTTCTCTT
TACCGACACTTGTGGTTATGGAGAGTTTGGACAATGCTATCGTTAAAACT
TCATCGTGCTGCCCAACTCGTCAGCAGACTCTACACACATTCCTGATGGT
GTTATTAAGAATCGGTATCATTGCCTTGTGTCTTGGATTAGCTCTTGTTT
TACCGTATTTTGCATATTTAATGGGATTCATAGGTTCTTCAATAACCTTA
ACAATGTGTCTGATTATTCCCTGTACGTTTCATTTGAAGATGAGATATGA
TACATTGAGGTTGCACCAAATATGTTTAGATGTTGTCATCATCGTATCCA
GTCTGGTTTGTCTTGGTGCTGGttcttacttttcttttgaatctATTTAT
TATGATTGGGTCAATGGTTCTTATAATTGAACGCTACAATTAGAATGGAT
TGGACTTGGAATGTATTTAAGCATTGGGAGAGAATTATTTTATACTGATA
GCTAGTTGATACAATATTAAAAAGCTAGATGAAatataaattatattttt
catagaaattttgcgaattttatGGGAACTTTGTTTccttatttcattgt
tttctggACCAATCGAGAAGACGTTTGATGAAAAGTGATTCGGTTAAAAA
TCCCCGTGAAATCACTTCCCTCTAAAGCTGACAAATATTTCTTGTCATCT
AGGTAATTTCTGTTAAAAATTCTTAAAGTAAATATCGTTTTCTATTATGA
ATttaacttattaaaaaaatgtaaatatttttctaaatacacctcttatt
tttgtttataaacaAAGTTTCACTTTTTGTTTTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064179-exon-scaffold_41-1491911889:636793..637240 | TCONS_00064179-exon-scaffold_41-1491911889:636793..637240 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1510915933:636793..637240 | TCONS_00064179-exon-scaffold_41-1510915933:636793..637240 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1575043694:636793..637240 | TCONS_00064179-exon-scaffold_41-1575043694:636793..637240 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1491911889:637749..637951 | TCONS_00064179-exon-scaffold_41-1491911889:637749..637951 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1510915933:637749..637951 | TCONS_00064179-exon-scaffold_41-1510915933:637749..637951 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1575043694:637749..637951 | TCONS_00064179-exon-scaffold_41-1575043694:637749..637951 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1491911889:638268..638410 | TCONS_00064179-exon-scaffold_41-1491911889:638268..638410 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1510915933:638268..638410 | TCONS_00064179-exon-scaffold_41-1510915933:638268..638410 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1575043694:638268..638410 | TCONS_00064179-exon-scaffold_41-1575043694:638268..638410 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1491911889:638625..640330 | TCONS_00064179-exon-scaffold_41-1491911889:638625..640330 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1510915933:638625..640330 | TCONS_00064179-exon-scaffold_41-1510915933:638625..640330 | Clytia hemisphaerica | exon |
| TCONS_00064179-exon-scaffold_41-1575043694:638625..640330 | TCONS_00064179-exon-scaffold_41-1575043694:638625..640330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:636793..640330 + |
Blast
BLAST of TCONS_00064179 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 4.210e-31 Identity = 104/388 (26.80%), Postives = 188/388 (48.45%), Query Frame = 2
Query: 941 AFPFIVRQAGYIVLPIAFLIAMMLNYTSRILIDLMYENLPEYDNQRVRVRKHITEIGREVFNSE---KGAKVVHVVQIIEMLCICILNICVLGQL------GHEISNYNVQLCTAIAALFAFPTFFIRKLAIIGWLQTIGVISLAIGIMLIQGWCLVHAEKFKTDNIPI-VQWHKLPIAIGVVVYAYGIQGVLPGMEEQMRKPQQFGRVINWTFGVSFILQCVFSLTNAMYYGEETAQVIVIDMKDHFELGITSACFIGISILSHFSLPTLVVMESLDNAIVKTSS-----CCPTRQQTLHTFLMVXXXXXXXXXXXXXXXXXPYFAYLMGFIGSSITLTMCLIIPCTFHLKMRYDTLRLHQICLDVVIIVSSLVCLGAGSYFSFESI 2059
P+ + GY+ L + A++ YT +ILI +YE D + VRVR I G +VV+V QIIE++ CIL + V G L G +S + + IA P F++ L + + ++ + +L+ +CL A + + + + K PI+IG++V++Y Q LP +E M++P +F ++NWT + +L+ +F+L + + +ET +VI ++ + + + ++LS + LP +E L+ ++ + S C + L ++ + LR ++ L +A+ +P+FA LMG GS +C ++P FHL++ + L HQ+ DV I V +C +G S E +
Sbjct: 136 GLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEE--NEDGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSI---IATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLPGSIR-AVVNIFLVAKALLS-YPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLKSWGLT-LRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLRLLWRKLLWHQVFFDVAIFVIGGICSVSGFVHSLEGL 515
The following BLAST results are available for this feature:
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