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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064169 ID=TCONS_00064169|Name=TCONS_00064169|organism=Clytia hemisphaerica|type=transcript|length=4627bpRun BLAST on NCBI protein sequence of TCONS_00064169-protein >TCONS_00064169-protein ID=TCONS_00064169-protein|Name=TCONS_00064169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=824bp MRKMAALWIPLCFCFISLVTRGVYTLGNEAHDSHDLHGDDDHDHGEKHHGRun BLAST on NCBI transcript from alignment at scaffold_41:407406..419063+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064169 ID=TCONS_00064169|Name=TCONS_00064169|organism=Clytia hemisphaerica|type=transcript|length=11658bp|location=Sequence derived from alignment at scaffold_41:407406..419063+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:407406..419063+ >TCONS_00064169 ID=TCONS_00064169|Name=TCONS_00064169|organism=Clytia hemisphaerica|type=CDS|length=27225bp|location=Sequence derived from alignment at scaffold_41:407406..419063+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064169 vs. Swiss-Prot (Human)
Match: S39AA (Zinc transporter ZIP10 OS=Homo sapiens GN=SLC39A10 PE=1 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 2.457e-46 Identity = 91/165 (55.15%), Postives = 121/165 (73.33%), Query Frame = 2
Query: 2969 LKSIAWMVLIGDAIHNFLDGIAIGVAFSETWPDGLHGGISTSIAILCHELPHELGDFAVLLNSGLSIKQALVMNFISSLTAFIGGIIGVSLGTQWA--ATNWIFAITAGLFVYIALVDMLPEILHSSSLKRHPWFC----IMLTNIGLWCGFMIMIALGAWEEDI 3445
+ +IAWMV++GD IHNF DG+AIG AFS GL GGISTSIA+ CHELPHELGDFAVLL +G+++KQA+V N +S++ A+IG +IG ++G Q+A T WIFA+TAG+F+Y+ALVDMLPE+LH FC +L N+GL GF IM+ + +E+ I
Sbjct: 666 IANIAWMVIMGDGIHNFSDGLAIGAAFSA----GLTGGISTSIAVFCHELPHELGDFAVLLKAGMTVKQAIVYNLLSAMMAYIGMLIGTAVG-QYANNITLWIFAVTAGMFLYVALVDMLPEMLHGDGDNEEHGFCPVGQFILQNLGLLFGFAIMLVIALYEDKI 825 The following BLAST results are available for this feature:
BLAST of TCONS_00064169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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