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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064168 ID=TCONS_00064168|Name=TCONS_00064168|organism=Clytia hemisphaerica|type=transcript|length=417bp
AAGTCGGTTGTTACGCTCGTAACAAGGCTTTATTGCCCGATATGATTTTG
AACGGTCGCGAAGTTACCGCTAAATATTTACCTGAAGATGGTTTGATTAG
CTGGGAAGACTACAACAGTTACATTCACAGTTTAGCCTGTGAGTGCGCTG
AAAAAGCTAAGGAACAAGGCTACAAATATTTCGGTATTGGTTTCTATGGA
GAATGCTTTGCCGGCAAAAACGTTGGATTGGCTGGTGTGTTGGCTAAAAC
ACAAATCTCAGATCTTTGCATCAGAGGTGACTACACTGCATGTGAGAAGG
TGGAAGATGGTTCACACGAGTGTGTTGGAGGAGCTAATGCTGAATACATT
TACACCATCCAAGAACAAGCTGCTCAAGCTGAACAAAGAATAAACGGTGG
TTATGGCAAATGGGCTG Run BLAST on NCBI transcript from alignment at scaffold_41:345652..347071+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064168 ID=TCONS_00064168|Name=TCONS_00064168|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_41:345652..347071+ (Clytia hemisphaerica)
AAGTCGGTTGTTACGCTCGTAACAAGGCTTTATTGCCCGATATGATTTTG
AACGGTCGCGAAGTTACCGCTAAATATTTACCTGAAGATGGTTTGATTAG
CTGGGAAGACTACAACAGTTACATTCACAGTTTAGCCTGTGAGTGCGCTG
AAAAAGCTAAGGAACAAGGCTACAAATATTTCGGTATTGGTTTCTATGGA
GAATGCTTTGCCGGCAAAAACGTTGGATTGGCTGGTGTGTTGGCTAAAAC
ACAAATCTCAGATGTAAGTCTCTCTTTCTCAGATTTCTATACCTAGTTAG
CTCTCCCTAAAACAACCTTCAAGGCAGTagttattttttgaattaaacaa
GGATTTGACCTTTGACCTACAGGgcgttggtctaaaaagcagggtagcca
attggggtagccgcttggggtagccaattgggctaggttgtggggtagcc
atgtatttcacagaccagagtaaaaaaataaaaactttttagatGATGAT
CCTAATTGGAGCCAGGgggaaactttgaaaaaaatattgctttttAGACC
AATCCCTTAAAGGAAAACCTTCTGTAGGACTTTTAAAGCTCAGATTATAA
CTGCCGAGCAAGGTCAGTCGCTCATAGGCATCAAGAGAAGTATCTTTTCA
GTtattaaaataacaaaatactAACATTACTTACATAGAAATatatttta
cataaaaaaaCACACACAAAGACACCAAAAGTGACAACCTGAGGACCGAC
TTCTGGGATCAGTTGCAAAACCTTTCAGAAAACCGAACAATAACAACTGG
TAACATTTCTTCTACTGTAGCTTTGCATCAGAGGTGACTACACTGCATGT
GAGAAGGTGGAAGATGGTTCACACGAGTGTGTTGGAGGAGCTAATGCTGA
ATACATTTACACCATCCAAGAACAAGCTGCTCAAGCTGAACAAAGTAAGA
CACCCTCTGCACACAGACCCGTTGACACCCTCTGCACACATagactggaa
aaattggccaaaatatcgtacCCCGGtgaaaatattttagtttttgtccc
cgctgaaaataatcaaataaacaaatagtTGCTCCAAAAGAttgctgttt
tttttcattgtgaATTTTCTAGCCTGAAGATAATACAATTCAAATTCCCA
GGCATAAAAACATGAGGAATATCAACCCCCATTGAGTTCCAGTCTGTTTT
TTTCCTTTTGCTAACCAAGATCCTATTAAAATCTGAGAAACTTGTTCTAG
CTCTGTTCATGATGTTCATTATCGGCTTGACACATTACCCGATAAAAACA
TATAAAACATCGcacttttgatgtttttgaatttgatcTATTATAAGCTC
CAATGATTCAAACATGGCTTTCTCTGTTCACACTTACTAGGAATAAACGG
TGGTTATGGCAAATGGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064168-exon-scaffold_41-1491911889:345652..345914 | TCONS_00064168-exon-scaffold_41-1491911889:345652..345914 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1510915933:345652..345914 | TCONS_00064168-exon-scaffold_41-1510915933:345652..345914 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1575043694:345652..345914 | TCONS_00064168-exon-scaffold_41-1575043694:345652..345914 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1491911889:346472..346595 | TCONS_00064168-exon-scaffold_41-1491911889:346472..346595 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1510915933:346472..346595 | TCONS_00064168-exon-scaffold_41-1510915933:346472..346595 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1575043694:346472..346595 | TCONS_00064168-exon-scaffold_41-1575043694:346472..346595 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1491911889:347042..347071 | TCONS_00064168-exon-scaffold_41-1491911889:347042..347071 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1510915933:347042..347071 | TCONS_00064168-exon-scaffold_41-1510915933:347042..347071 | Clytia hemisphaerica | exon |
| TCONS_00064168-exon-scaffold_41-1575043694:347042..347071 | TCONS_00064168-exon-scaffold_41-1575043694:347042..347071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:345652..347071 + |
Blast
The following BLAST results are available for this feature:
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