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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064130 ID=TCONS_00064130|Name=TCONS_00064130|organism=Clytia hemisphaerica|type=transcript|length=3048bp
AACTTTCCACCAGTTTCCACcgggaacgatattttggccaatttttccac
tgggaaggggtcccagtgggtctgtgagaagggggtgcatGCAATTCCAC
CATAATTTATCATTAGCCAAATCAAACCAATTATTGTCATTTAAAACATT
AGCCTTTTTCAAATTAGACAAACCCTTTTCTACGCAAATTTTGGGGCACC
TTTAGGACGTTTAGATATAAAACCCAACGAAAAAGCAGTTTGCGTAGCAA
ACGATCAAAGCTAGTTCTTGCAATTAGCGTCGAGTAATATAGTAATATAC
CAGGTGGGTCAAAAAAAAGTATTAAATTGctagaataaaaaacaaaataa
acaatcttCCATTGTGAAGGAATTTGGTTGAGCTGTAAgtgtaaaaaaag
tttaaaatctgTGTAAGATCCTAATTTAAGTCTTGGGTATGAAGTTACAA
ATCGAAAGAAGAATGATTTAATTAAGAAATTTACCATGTCCCTAGTAAAA
ACAATCACGGAATGGATAATTcaccagaaaaatgaaaacacctACGCCTC
CTTCGCTTGACATAATAGGAATTTGTCTTTCcgataaaaactttattttc
taTCAACCAAAAACTGTATGAACAACGTTTATCGATCGAACATTGTACTA
GAACTTTTATAAACCCTGTTAGCTAAAGCTGTCACAAGCAACGAgtaaaa
gtaagtaagtttgcaaccgcagtcgagggcgacccgaagactcccttttc
gtatagctacccgaaggtaggggaaggcgccactcctttccctggatttc
tccacttacccttgatccttctctttagTTACTGGgaatcaagcagagag
gcatcaagtaccattttgggaatctttggtatgacccgactggggatcga
acccacaatcttgcgcaccgtagctggatgctctacatTCATGCTACGGT
CGGAAAAGAACCTAGATGTTTATTCATGCATTAAGTTGTAACTTTCATTT
AGGATCAAGACCTACTGATATTGCAGACTGGGCGACACAAGAGTTCACAC
CTACGCCATTAAGATACCAATTTTCAcccattgtcaatatatttcaagAC
AATTTCATCGAAAAACGAAACATACAAAATTCAGATGGTCAGCCTGTTAA
TTCATTAAAACTTCGCCAGTGGTTTATGCCTCTATATGACAAATATTGTG
AAGTGCTCGGCTTCAAATGTTCCATGGCTAAAGGGTGCGGTTTTGATGAC
AATTGTCCAGTTGATACAATATGTGAGGGTGAAGGTGAAACACATGAATG
CGGTGAATGGGGCGAATGGGGTTCATGGGCTTGTAGTGAATGTGGTGTTT
CATTGCAAAAGAAAAGAACACGCGAATGTACAGGGTGCAATGGAGAAGAA
GAACAAATTCAATACTCTGAAGATCCAACAGATTGCTGTAACGTTCTACA
CAAAGTGTATGTCCGAGTTGCATTgtacgaaaatactgatgctgGTAGTA
ATTATGAACCCTACGGTGATATGAAGATCTCAATCGGTGATCGACCGgag
aatcaaaacaaacaagccTGGAATGTCGCAAGAAAAAATTGTCCAAGCTT
TAAGTTGAGCACTTGGTATTATGGACCTGATAAATATATTGAATTTTATG
AACACTTTGATTTTCTTAAATCAGATGGTAATATCTTCAAGTTACATGGA
CATGCTTGGGAGGCTGATAATAATCCTGATGATCTGCTTGCAAAGTTTGA
TGATTTTCAAGATGATGTGAAAAAATATCTTGATTATGACTGGCTCCACT
TCAATGGTAAAGCTGGCCATGGTAAAGAAGAAGGTCAAGTAAAAATCAAA
TTCTATAAAGTTTGAATTTGACTAAACTTTGAAAGAGGGAAATTAATCTA
AAAGTTTTATcaaagaatttaattttttccaggCTATGAATTTAATGTTT
CATATTGGTCACATTTTTATTATTACCTGACCAGACATCGGTTTACTGTT
ATGTAATATTTTGTATTATAACAGATATTTGTATGGCCTTTCATTAgatt
attgagatttattaactgGAGGTGAGTGATATTCAATATCATTTACCGAG
TAATAAATCCAATATCTAAGGAAAGTTGACATGCAATATATGTTTTAATA
TATACCAAGAACCATTTCATCTATATTCCAACAAAAGCTAGTCAATCACA
AGCGTTTTGGACTATATTTTAATTGAGGAACTAAAGCACaaataattttc
caaaactGACATTAAAATATCAGAAGCAACTCCATTGCTGGCGTGGTACT
CAAGCGTGTAATAATTACCGTATCATTGCACAGTCATTGGCAATATGGAG
ATTTATTTTAGAGGAAAAAAGCTTACTGGTATgtaataataagcagatat
tcaatggttaaaagttggttattgagatttattaacccgaggtgatgtaa
tattcaacgaggcgaagccgagttgaatatacatcaccgagggttaataa
atccaatatccaacgaaaacctatttaatatatgttttattatataccta
gggcaaaaataaaacattaactATGTCAATATAGTCAAACGATTCACTTA
AAACACTCCCagaatcgaacgttcgaatgtttttcttttttcaatgattt
tattAATTACTTTGActtataaaatttgtttatgaaattgacaatagatt
tattttaatgaatttctttgataacaacaagagcaacaaaaaaactcaaa
ctttgaaagcaaaatttgaaaaaaaaattctaccgtggtataatagccat
ggtatatcaggaattattcaatggctgtttttgcctacaatAAAAgttct
tatttaattttttttgtctatCCCATACTATTAATTTTGTAAGTTTATTC
AAAAGCAAGTTAAAATTGTAAACATTTCCTCTGAGTTTAACCAAATTATC
TTTCTTGttcatcaatttcaattttcgatGAAAGAATTTTAATTGTCATT
AAATCTGTGAAAACTTCCGACTTtattattcatagaattatatttcag Run BLAST on NCBI transcript from alignment at scaffold_409:39833..45792+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064130 ID=TCONS_00064130|Name=TCONS_00064130|organism=Clytia hemisphaerica|type=transcript|length=5960bp|location=Sequence derived from alignment at scaffold_409:39833..45792+ (Clytia hemisphaerica)
AACTTTCCACCAGTTTCCACcgggaacgatattttggccaatttttccac
tgggaaggggtcccagtgggtctgtgagaagggggtgcatGCAATTCCAC
CATAATTTATCATTAGCCAAATCAAACCAATTATTGTCATTTAAAACATT
AGCCTTTTTCAAATTAGACAAACCCTTTTCTACGCAAATTTTGGGGCACC
TTTAGGACGTTTAGATATAAAACCCAACGAAAAAGCAGTTTGCGTAGCAA
ACGATCAAAGCTAGTTCTTGCAATTAGCGTCGAGTAATATAGTAATATAC
CAGGTGGGTCAAAAAAAAGTATTAAATTGctagaataaaaaacaaaataa
acaatcttCCATTGTGAAGGAATTTGGTTGAGCTGTAAgtgtaaaaaaag
tttaaaatctgTGTAAGATCCTAATTTAAGTCTTGGGTATGAAGTTACAA
ATCGAAAGAAGAATGATTTAATTAAGAAATTTACCATGTCCCTAGTAAAA
ACAATCACGGAATGGATAATTcaccagaaaaatgaaaacacctACGCCTC
CTTCGCTTGACATAATAGGAATTTGTCTTTCcgataaaaactttattttc
taTCAACCAAAAACTGTATGAACAACGTTTATCGATCGAACATTGTACTA
GAACTTTTATAAACCCTGTTAGCTAAAGCTGTCACAAGCAACGAgtaaaa
gtaagtaagtttgcaaccgcagtcgagggcgacccgaagactcccttttc
gtatagctacccgaaggtaggggaaggcgccactcctttccctggatttc
tccacttacccttgatccttctctttagTTACTGGgaatcaagcagagag
gcatcaagtaccattttgggaatctttggtatgacccgactggggatcga
acccacaatcttgcgcaccgtagctggatgctctacatTCATGCTACGGT
CGGAAAAGAACCTAGATGTTTATTCATGCATTAAGTTGTAACTTTCATTT
AGGATCAAGACCTACTGATATTGCAGACTGGGCGACACAAGAGTTCACAC
CTACGCCATTAAGATACCAATTTTCAcccattgtcaatatatttcaagAC
AATTTCATCGAAAAACGAAACATACAAAATTCAGATGGTCAGCCTGTTAA
TTCATTAAAACTTCGCCAGTGGTTTATGCCTCTATATGACAAATATTGTG
AAGTGCTCGGCTTCAAATGTTCCATGGCTAAAGGGTGCGGTTTTGATGAC
AATTGTCCAGTTGATACAATATGTGAGGGTGAAGGTGAAACACATGAATG
CGGTGGTAAGCATTTTTTCTCagctgttttgtttttaagggttacttaga
ctacacaatatattggtgagCAATATTCGTCAATAAAAGTTAtggaccgt
aatgtacggagTAAACAACAggtgctctattataaaaaggtaAACAATCC
TCCTATATTATATTGTTGAAATATTGCATAAttaagctgacaatatattg
cggataccgtttcaatatattgccggcggtcagcaatatatcatcaaaat
attgtctgacaatatattgtgtagtgtatgtagccctttataGAAACAGA
AAAAGTGTAATTTTTTAtatcatggaggtaataaaagtatagatggagag
tcaatgcctttctattctgatttatcatcggaagcaaacagctatttagt
tgctttgggaataagatgattaattttgggtatacacgtgggaatattta
agataaaTGGCAAgccattacatttttaacaagtatattgaaatataata
gccctgtcatgaaaaattgaaaaaacttcacataataagcaaaatactcc
aaacttctaggggaagctgcccataaagccatcgatagatttacaaaaga
attacgtgttacgattaggaaccttgtatcaatcattttgtcagagtatg
aaaaccgctgcccacttagacgtgaagattttaagataagaaactttcga
TGATAAAGTGATGCAACTttcaatgttaacaaaatgccagcccaaaaatg
tgtccttatgaaattaatatactcttttagtcttacatcagttgaaacta
tttcaaattgcattttaacaaggattttcggCAAGATtaggtttttcaaa
atcaacaaaacagtctctttctgttcttataaacttataaattgatgttt
tttgcttccaatgatggtacatcaaagtaAAGCCGCTTTGAATTCAAAGA
GTATATAGATTTAtgaaagatttcaacgaccatttagatcactaccgaga
cgttttctctccctctatatctttattacctccatgttTATATGTAGTCC
CTTTGAgaacccctgtgtcacagacccactgggaccccatccacactgga
aaatttggcaaaaatttctccggtggaaaaatatcctgaaatttcagctc
cactgggaaattgactttgatttttatccccactgaagaaaaaagttcca
tcggTGCTGTGAGACAGGTGTGTTTTTGCCAAACGTCATCAAAGTCATCC
AGTATGTAATTATAAGTCGGAAAAAAATGCAGAATTCATTTTATTGGTCC
AATCTGACGTAAAAGATAAAGTTTAGTGTGATTCttgtatgtgttttttt
tgTCTTCAGAATGGGGCGAATGGGGTTCATGGGCTTGTAGTGAATGTGGT
GTTTCATTGCAAAAGAAAAGAACACGCGAATGTACAGGGTGCAATGGAGA
AGAAGAACAAATTCAATACTCTGAAGATCCAACAGATTGCTGTAGTAAGC
ATAATTCAGcctttaaagattttaaaatagcTGTACGTCTAGATGTGGTT
TAGAAAGAGTATTTTCCAGGGGAGTCTTCAAAAGTCCGACAGCTTTCTAG
CCCGACAGAAAATTCCGGCAATGCAACGTAAGGTTGCGCCAGTTTTTCAA
AATCGATTCCTGCCATTTTTTGCTGATtactttttttaatgaaaaagacA
CAGCACATTTTCGGCAACATCTAATAGAcaatatcggcttaacgtgaaac
tcagatttgatccccgaatattgcccacaatgctttgcgcggaaaaaagt
tcacggtgaaatcttttccgcacaaagcattgtgggcaatattcggggat
caaatctgagttttcacgttaagccgatatcgtctattgtagAACGTTTT
TGTAAGACTCAAATAAGCTCATAAATGCTATGCTGATTGCCATCAATATT
TtactaaaatgtcaaaagatGGATAGGTTTCTGACCCCCTGaaaagtatt
tttgaaaattatttcaattcaTTCTGTAAACTCAAGAAatattagtcatt
taaaaaaggaataaaccagctgcactggaaagtcagcccaaaAGGCTTAG
AATGATTAAGAcgaagcaaaaataaaaaactgagcacattttttttgctt
ggaacgTTCAGACGAAAACTGCACAGCACAGTCGAATCCTGTCTTCAAGG
AAATTTATTCCCGAAAGATATAGTCCAAAGTTTATCACTGAACttgcaaa
acaataaaaaaaaagagcCCGTTTTCAAGTCAACCAGGGCAAGGTTTTAA
GCTGCATTATTTGagtgaatgaatattttttgaatatttttttcgcattt
atgacgttctaagattaaagaatttatgatatgaaaatgaagattgtAGC
ATTATTCTACATGAAGTTGACTTTCTTCTACTTCGTTTTTCATCTtgttt
caccattttttgaatttcttttttgataatattccactccaaaatatctt
tttgacaatttcaatttatggaagtgtatttctcaggtctattatATTTA
CAATTTAGATAAATGATAGAGTTTTTACAGATCGGCCCACACTGGCGTGG
GCCTCTAACCCGCTCTTCTTATAATCATGTTGTTTCcgtcgtaaatttct
ttaaatagagtTTAGTCTACCTCTCACTTTTCATATATGACTCTTGTCTT
TTGCTttcgatgttttttttcttttgctttatgaTGCCATTGTTTAATTA
TCTCGCgttctttccttgaaaaatcgtctgaTACTCTGAAATCATCTTTA
TCTAACACAGCGTATTTTGGTTTGttacattgggcttttccagaaatagt
cctcAACCAAAATATACTCAACCCCTTCGTTGGGGGTTGAGTATATTTtt
aaaagtggatatccaggggtctttactaataaagtgggatatccaggggg
ttcgatacttcgaaaaatcgaTATCCTCGACAgtgggggtaatttttttt
tctggaaaagcccatttacaAAGCGCATATAAATGTTATTTTGCTTTTAC
AGACGTTCTACACAAAGTGTATGTCCGAGTTGCATTgtacgaaaatactg
atgctgGTAGTAATTATGAACCCTACGGTGATATGAAGATCTCAATCGGT
GATCGACCGgagaatcaaaacaaacaagccTGGAATGTCGCAAGAAAAAA
TTGTCCAAGCTTTAAGTTGAGCACTTGGTATTATGGACCTGATAAATATA
TTGAATTTTATGAACACTTTGATTTTCTTAAATCAGATGGTAATATCTTC
AAGTTACATGGACATGCTTGGGAGGCTGATAATAATCCTGATGATCTGCT
TGCAAAGTTTGATGATTTTCAAGATGATGTGAAAAAATATCTTGATTATG
ACTGGCTCCACTTCAATGGTAAAGCTGGCCATGGTAAAGAAGAAGGTCAA
GTAAAAATCAAATTCTATAAAGTTTGAATTTGACTAAACTTTGAAAGAGG
GAAATTAATCTAAAAGTTTTATcaaagaatttaattttttccaggCTATG
AATTTAATGTTTCATATTGGTCACATTTTTATTATTACCTGACCAGACAT
CGGTTTACTGTTATGTAATATTTTGTATTATAACAGATATTTGTATGGCC
TTTCATTAgattattgagatttattaactgGAGGTGAGTGATATTCAATA
TCATTTACCGAGTAATAAATCCAATATCTAAGGAAAGTTGACATGCAATA
TATGTTTTAATATATACCAAGAACCATTTCATCTATATTCCAACAAAAGC
TAGTCAATCACAAGCGTTTTGGACTATATTTTAATTGAGGAACTAAAGCA
CaaataattttccaaaactGACATTAAAATATCAGAAGCAACTCCATTGC
TGGCGTGGTACTCAAGCGTGTAATAATTACCGTATCATTGCACAGTCATT
GGCAATATGGAGATTTATTTTAGAGGAAAAAAGCTTACTGGTATgtaata
ataagcagatattcaatggttaaaagttggttattgagatttattaaccc
gaggtgatgtaatattcaacgaggcgaagccgagttgaatatacatcacc
gagggttaataaatccaatatccaacgaaaacctatttaatatatgtttt
attatatacctagggcaaaaataaaacattaactATGTCAATATAGTCAA
ACGATTCACTTAAAACACTCCCagaatcgaacgttcgaatgtttttcttt
tttcaatgattttattAATTACTTTGActtataaaatttgtttatgaaat
tgacaatagatttattttaatgaatttctttgataacaacaagagcaaca
aaaaaactcaaactttgaaagcaaaatttgaaaaaaaaattctaccgtgg
tataatagccatggtatatcaggaattattcaatggctgtttttgcctac
aatAAAAgttcttatttaattttttttgtctatCCCATACTATTAATTTT
GTAAGTTTATTCAAAAGCAAGTTAAAATTGTAAACATTTCCTCTGAGTTT
AACCAAATTATCTTTCTTGttcatcaatttcaattttcgatGAAAGAATT
TTAATTGTCATTAAATCTGTGAAAACTTCCGACTTtattattcatagaat
tatatttcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064130-exon-scaffold_409-1491911889:39833..41137 | TCONS_00064130-exon-scaffold_409-1491911889:39833..41137 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1510915933:39833..41137 | TCONS_00064130-exon-scaffold_409-1510915933:39833..41137 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1575043694:39833..41137 | TCONS_00064130-exon-scaffold_409-1575043694:39833..41137 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1491911889:42492..42626 | TCONS_00064130-exon-scaffold_409-1491911889:42492..42626 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1510915933:42492..42626 | TCONS_00064130-exon-scaffold_409-1510915933:42492..42626 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1575043694:42492..42626 | TCONS_00064130-exon-scaffold_409-1575043694:42492..42626 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1491911889:44185..45792 | TCONS_00064130-exon-scaffold_409-1491911889:44185..45792 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1510915933:44185..45792 | TCONS_00064130-exon-scaffold_409-1510915933:44185..45792 | Clytia hemisphaerica | exon |
| TCONS_00064130-exon-scaffold_409-1575043694:44185..45792 | TCONS_00064130-exon-scaffold_409-1575043694:44185..45792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:39833..45792 + |
Blast
The following BLAST results are available for this feature:
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