TCONS_00064118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064118
Unique NameTCONS_00064118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1966

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064118 ID=TCONS_00064118|Name=TCONS_00064118|organism=Clytia hemisphaerica|type=transcript|length=1966bp
GTGATCATTTGTCGACCAGTAGTGTCGAGGGGGCGACGGTATTTTGGCGT
TTTCACCGTCGTGGAGCAAAGTCGACAGACGTCGAGCTCTTTGACTTTGA
GCGAGCAAgtaaatttgtttaaaattagATTTACAGCGAAGTGATTGATG
TGATGTAGCGGAACGAGCGGAACATTTAATTCTGCTAGGAGACTAGGAAC
GAAGTTGTTCGCTCTACCATATACCATTTGTTCAAACCACCCCACTCTCT
CTCTTTTCTAGCAAAACCACAAACCACACCGCACACACTGACAGACAGAG
ATCGAGAACAAACTGTACCCACAATTTAAAGATGTCGAAAAGAAAAGCCA
CACCACAAAAAGACACACCTCAACTTAAGGAAATTGAACTCAAAGGATAT
GTATCAAACCTTTCACCTATGAAGCAGACCAAAATAGCAAAGCCGTTTTT
CAATCTGAATGTGGAGACAGAAGACAACCAGGTGAAACGTGTTGTTTGCT
TTTCTCCTCACAAGAGGCGTTTGTTAGAAGATTCAGAAAATCAGCAAATC
GGTGTCCACATAACCAAAGCTGGATTATATGACAATGGAACTGTCAAAAT
TATGGAAAATTCGGTCATCAAACAAGAATTGCTTGGTTTCAAGCCCAACT
ACAAATTGCCAATCACAAAAATCTTTACTGCAATAAATGAAACACAATTG
AATGAACATATAAACATCACAGGTGTCTTAAAATTGCATGATATTGACAA
TGTGGATGTCGAGGGAGCGAATGTCCCTATGAGAAAAGGAATTATCTGCA
ATGATACTGACCACATCAACATTGTTTTCTGGAGAGAGTATGCATCCCTT
GTTAACGATGGTGACTCTTACATACTGACGAACATGAGGCGTGGCATTTG
GAATAATGAACCTGAACTAGCATCCACAAGTAGTACAGCATTCAAAAANT
GCGAATGTCCCTATGAGAAAAGGAATTATCTGCGATGATACTGACCACAT
CAACATTGTTTTCTGGAGAGAGTATGCATCCCTTGTTAATGATGGTGACT
CTTACATACTGACGAACATGAGGCGTGGCATTTGGAATAATGAACCTGAA
CTAGCATCCACAAGTAGTACAGCATTCAAAAAGATTCAAGATCTGGAGGA
TTACAAGAGTCCTGAGGAACATTCAACTGTATCACACCATTATGACTGCA
CTATTGTCGGTGCTAAATTAACACATACAACAAAGTGCTTATTCTGCAAC
CACGTCTTTTCTTGCACCAAGTCCTCTAAAAAAACAATCGATTGCCCATC
CTGTGATGCAACTGTCATGATTGCAGCAAGCGAAGTCAAGTTTTGGTCAA
TCTTTGTAAATACAAATACATCTACAATTAAACTTGATGTAAAGGAAAAC
ATGTTGCCAATTGGAATGGGTAATGATCAAATCCAATTATATTTGATGAC
AAACAAATTTGATATTGATTACTTGTCAATAAGTGGTGTTGTTACAAAAC
TTGACCTTGTTAAAGCTACTACTGTGGTCATGGACGAACAAGAAGAAAAC
ACTGGTAGTACTGGAGATGATGATGACACAGGTAATACTGGAGATGATGA
TGACACAGGTAATACTGGAGATTTCGACAAAGAGAATTTAACACCagttg
agaaaaaagaaaagaaagaatgaCACTAGAATGACCATTGACATATTAAT
ATTCTTTTGTTGCATTAGCatcttattttttgttttgtatatgtagtatt
ttgtttttttaaatcctTGGATTATTTTGAGCAGAGAATTGTATGTGTGT
CCATATAGATGCTTTGACCTTGTTGACAAATTTGCTGTTTTAATCTTCTT
CAGCATCAATTTAGTTTTCATGTCATCCATTGGTATTGTATGTTTGTTTG
GATACATTGACAGTTAAGATTGCTTGACCTTGTTCATTCAGCCTTGTTGa
caaatttcgttttttt
Run BLAST on NCBI

protein sequence of TCONS_00064118-protein

>TCONS_00064118-protein ID=TCONS_00064118-protein|Name=TCONS_00064118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MRKGIICDDTDHINIVFWREYASLVNDGDSYILTNMRRGIWNNEPELAST
SSTAFKKIQDLEDYKSPEEHSTVSHHYDCTIVGAKLTHTTKCLFCNHVFS
CTKSSKKTIDCPSCDATVMIAASEVKFWSIFVNTNTSTIKLDVKENMLPI
GMGNDQIQLYLMTNKFDIDYLSISGVVTKLDLVKATTVVMDEQEENTGST
GDDDDTGNTGDDDDTGNTGDFDKENLTPVEKKEKKE
Run BLAST on NCBI

transcript from alignment at scaffold_408:163517..166558-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064118 ID=TCONS_00064118|Name=TCONS_00064118|organism=Clytia hemisphaerica|type=transcript|length=3042bp|location=Sequence derived from alignment at scaffold_408:163517..166558- (Clytia hemisphaerica)
GTGATCATTTGTCGACCAGTAGTGTCGAGGGGGCGACGGTATTTTGGCGT
TTTCACCGTCGTGGAGCAAAGTCGACAGACGTCGAGCTCTTTGACTTTGA
GCGAGCAAGTAAATTTGTTTAAAATTAGATTTACAGCGAAGTGATTGATG
TGATGTAGCGGAACGAGCGGAACATTTAATTCTGCTAGGAGACTAGGAAC
GAAGTTGTTCGCTCTACCATATACCATTTGTTCAAACCACCCCACTCTCT
CTCTTTTCTAGCAAAACCACAAACCACACCGCACACACTGACAGACAGAG
ATCGAGAACAAAGTAAGCCATTGAAAAAAATCCATGCATATCTTGTGGTT
TTTAACAGATAACAGTTTTTCACTTACTGTAAATCCTATTCCATTAAACC
ATTAAAAGATTTACTGAAATATTTTGTATCCACGTCTGCTACTGCTCAAT
CTAAAGTGGATGATAAAACCAAATCTTAATTTTTACAGCTGTACCCACAA
TTTAAAGATGTCGAAAAGAAAAGCCACACCACAAAAAGACACACCTCAAC
TTAAGGGTAAGTCTAATCTATTAAATGGGACATTGTTGTTGCACATAATT
GGATATATTGGCTTCATTCATCCTCAAAATTGTACGTTCTGGTGTAGTTC
TAGTGGTTTGTAAGACCACCATGTGCTTGATATGCAAGCCTAAACAGTGT
TTAAAATTGCTAGTACTAATCCCTCAAGGCAAAATTGTCCACTTTTAGCA
CTTTCGGCTTTGTGTTTCATTCAATATCTGGAGAAGTAGACAAGCTTATT
CATAATATTTTCTGCATTCTGTCTGTAACAAAATAAATATGGGGTTGGTT
GTGGCTGTGGGGGCGTATGGGTCAATCGGTACTCAGTAATAGGCCAATTT
TTTTATCAGTGTTCAGTATTTCTTTTGAAAAAATAGGTCAGTATAAGGTA
TTCGGACATAAGGTTGAAATCAATAAATTCGGCATTTCTCTTAATGGTCG
GTATTTTTATTAACGGTCGGTATTTTTTTTAACGGTCTGTATTTGGTATT
CGGTATCCATTGTGGCCCTTTGTGGAAACAATTCCTCAGCTGTCTAAAAG
CTGTTGAATTTTTCGAAGCATGCCCCTCGTACTAACCTGAGATTAGATTG
TGAATGTTTTCTGTAATCCATGTCATGGGTTGTTACACCTAAGCCCTCTC
ACAATACACATACTTCTGTTATGGTACCCCCTTTCCTATAAAAACATAAA
GAAACCATTTTATATCTGAATAAATCAGTGTATCTATTACTTAGTTAAAT
TTATATTGTCCTGGCAAAATAACGAAAATACACTAAAACATATTTTTGAC
TCTATATTATTTTGATATGCTTTGACATTAATTATACTTTTGAATCAATG
TACTTTCCCTCATGCTTATGTTGTTGTCTTTTGATTTGTCTTCATTCTCT
TTTTAGAAATTGAACTCAAAGGATATGTATCAAACCTTTCACCTATGAAG
CAGACCAAAATAGCAAAGCCGTTTTTCAATCTGAATGTGGAGACAGAAGA
CAACCAGGTGAAACGTGTTGTTTGCTTTTCTCCTCACAAGAGGCGTTTGT
TAGAAGATTCAGAAAATCAGCAAATCGGTGTCCACATAACCAAAGCTGGA
TTATATGACAATGGAACTGTCAAAATTATGGAAAATTCGGTCATCAAACA
AGAATTGCTTGGTTTCAAGCCCAACTACAAATTGCCAATCACAAAAATCT
TTACTGCAATAAATGAAACACAATTGAATGAACATATAAACATCACAGGT
GTCTTAAAATTGCATGATATTGACAATGTGGATGTCGAGGGAGCGAATGT
CCCTATGAGAAAAGGAATTATCTGCAATGATACTGACCACATCAACATTG
TTTTCTGGAGAGAGTATGCATCCCTTGTTAACGATGGTGACTCTTACATA
CTGACGAACATGAGGCGTGGCATTTGGAATAATGAACCTGAACTAGCATC
CACAAGTAGTACAGCATTCAAAAANTGCGAATGTCCCTATGAGAAAAGGA
ATTATCTGCGATGATACTGACCACATCAACATTGTTTTCTGGAGAGAGTA
TGCATCCCTTGTTAATGATGGTGACTCTTACATACTGACGAACATGAGGC
GTGGCATTTGGAATAATGAACCTGAACTAGCATCCACAAGTAGTACAGCA
TTCAAAAAGATTCAAGATCTGGAGGATTACAAGAGTCCTGAGGAACATTC
AACTGTATCACACCATTATGACTGCACTATTGTCGGTGCTAAATTAACAC
ATACAACAAAGTGCTTATTCTGCAACCACGTCTTTTCTTGCACCAAGTCC
TCTAAAAAAACAATCGATTGCCCATCCTGTGATGCAACTGTCATGATTGC
AGCAAGCGAAGTCAAGTTTTGGTCAATCTTTGTAAATACAAATACATCTA
CAATTAAACTTGATGTAAAGGAAAACATGTTGCCAATTGGAATGGGTAAT
GATCAAATCCAATTATATTTGATGACAAACAAATTTGATATTGATTACTT
GTCAATAAGTGGTGTTGTTACAAAACTTGACCTTGTTAAAGCTACTACTG
TGGTCATGGACGAACAAGAAGAAAACACTGGTAGTACTGGAGATGATGAT
GACACAGGTAATACTGGAGATGATGATGACACAGGTAATACTGGAGATTT
CGACAAAGAGAATTTAACACCAGTTGAGAAAAAAGAAAAGAAAGAATGAC
ACTAGAATGACCATTGACATATTAATATTCTTTTGTTGCATTAGCATCTT
ATTTTTTGTTTTGTATATGTAGTATTTTGTTTTTTTAAATCCTTGGATTA
TTTTGAGCAGAGAATTGTATGTGTGTCCATATAGATGCTTTGACCTTGTT
GACAAATTTGCTGTTTTAATCTTCTTCAGCATCAATTTAGTTTTCATGTC
ATCCATTGGTATTGTATGTTTGTTTGGATACATTGACAGTTAAGATTGCT
TGACCTTGTTCATTCAGCCTTGTTGACAAATTTCGTTTTTTT

Coding sequence (CDS) from alignment at scaffold_408:163517..166558-

>TCONS_00064118 ID=TCONS_00064118|Name=TCONS_00064118|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_408:163517..166558- (Clytia hemisphaerica)
ATGAGAAAAGGAATTATCTGCGATGATACTGACCACATCAACATTGTTTT
CTGGAGAGAGTATGCATCCCTTGTTAATGATGGTGACTCTTACATACTGA
CGAACATGAGGCGTGGCATTTGGAATAATGAACCTGAACTAGCATCCACA
AGTAGTACAGCATTCAAAAAGATTCAAGATCTGGAGGATTACAAGAGTCC
TGAGGAACATTCAACTGTATCACACCATTATGACTGCACTATTGTCGGTG
CTAAATTAACACATACAACAAAGTGCTTATTCTGCAACCACGTCTTTTCT
TGCACCAAGTCCTCTAAAAAAACAATCGATTGCCCATCCTGTGATGCAAC
TGTCATGATTGCAGCAAGCGAAGTCAAGTTTTGGTCAATCTTTGTAAATA
CAAATACATCTACAATTAAACTTGATGTAAAGGAAAACATGTTGCCAATT
GGAATGGGTAATGATCAAATCCAATTATATTTGATGACAAACAAATTTGA
TATTGATTACTTGTCAATAAGTGGTGTTGTTACAAAACTTGACCTTGTTA
AAGCTACTACTGTGGTCATGGACGAACAAGAAGAAAACACTGGTAGTACT
GGAGATGATGATGACACAGGTAATACTGGAGATGATGATGACACAGGTAA
TACTGGAGATTTCGACAAAGAGAATTTAACACCAGTTGAGAAAAAAGAAA
AGAAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040199XLOC_040199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064118-exon-scaffold_408-1575043694:166247..166558TCONS_00064118-exon-scaffold_408-1575043694:166247..166558Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1575043694:166003..166070TCONS_00064118-exon-scaffold_408-1575043694:166003..166070Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1575043694:163517..165102TCONS_00064118-exon-scaffold_408-1575043694:163517..165102Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1510915933:166247..166558TCONS_00064118-exon-scaffold_408-1510915933:166247..166558Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1510915933:166003..166070TCONS_00064118-exon-scaffold_408-1510915933:166003..166070Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1510915933:163517..165102TCONS_00064118-exon-scaffold_408-1510915933:163517..165102Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1491911889:166247..166558TCONS_00064118-exon-scaffold_408-1491911889:166247..166558Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1491911889:166003..166070TCONS_00064118-exon-scaffold_408-1491911889:166003..166070Clytia hemisphaericaexon
TCONS_00064118-exon-scaffold_408-1491911889:163517..165102TCONS_00064118-exon-scaffold_408-1491911889:163517..165102Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064118-proteinTCONS_00064118-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_408supercontigscaffold_408:163517..166558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.282822	0.445902	0.0544403	0.077647	0.871371	0.451873	0.571126	0.72656	0.446281	0.435908	0.267343	0.227039	0.311372	0.430027	0.366532	0.793397	0.499684	0.60873	0.686873	0.692396	0.476526	0.651539	0.852149	0.71565	0.086718	0.0611106	0.734158	0.187799	0.148217	0.306289
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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