TCONS_00064103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064103
Unique NameTCONS_00064103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064103 ID=TCONS_00064103|Name=TCONS_00064103|organism=Clytia hemisphaerica|type=transcript|length=540bp
GCCCATACTCATCATGCTTCATGCTCAAAGATTCCAAGTTTCTTATTTCT
GTTTCTACAGAATCGTAAAGTTTTCTCAATTCTTTCACCTCAGAAATGTC
ACAAACAGATTCAAGTTCGATAATTCTGTTCATGTgaacagttttcaaaa
tttgagaatttccAAACCTCTCTTTAAGAAGTTCAAGAGCTTTCTTGTAA
TTGTCTCCAGATAAGCGGAGGCCTTTTAAAAGACTTTCAGCCTCACCCGT
TACAAATCCGATCAAATAATTCATCTTTTGAATCGGTGGAATACTATTGT
TCTTATCAATAGCTTCAGTGAATGACTCGATAAATGACTGGTATTCAGAG
GGTTCACCagaaaactttttgatatttAAGGTCGGTAATTTGACTTTCAC
ACCCGTGCTTGAAGAAAATGAGGGATTCGATTGAGAGATGGAAGGAGAGC
TTTCAATTTGAGGTGCCACTGAATTTGCATAATGTCTAGCGATAAAACTG
TTAATTGAGGTTaatttagttttagtttttaccTCGTATT
Run BLAST on NCBI

protein sequence of TCONS_00064103-protein

>TCONS_00064103-protein ID=TCONS_00064103-protein|Name=TCONS_00064103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
YEVKTKTKLTSINSFIARHYANSVAPQIESSPSISQSNPSFSSSTGVKVK
LPTLNIKKFSGEPSEYQSFIESFTEAIDKNNSIPPIQKMNYLIGFVTGEA
ESLLKGLRLSGDNYKKALELLKERFGNSQILKTVHMNRIIELESVCDISE
VKELRKLYDSVETEIRNLESLSMKHDEYG
Run BLAST on NCBI

transcript from alignment at scaffold_407:370366..370905

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064103 ID=TCONS_00064103|Name=TCONS_00064103|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at scaffold_407:370366..370905 (Clytia hemisphaerica)
AATACGAggtaaaaactaaaactaaattAACCTCAATTAACAGTTTTATC
GCTAGACATTATGCAAATTCAGTGGCACCTCAAATTGAAAGCTCTCCTTC
CATCTCTCAATCGAATCCCTCATTTTCTTCAAGCACGGGTGTGAAAGTCA
AATTACCGACCTTaaatatcaaaaagttttctGGTGAACCCTCTGAATAC
CAGTCATTTATCGAGTCATTCACTGAAGCTATTGATAAGAACAATAGTAT
TCCACCGATTCAAAAGATGAATTATTTGATCGGATTTGTAACGGGTGAGG
CTGAAAGTCTTTTAAAAGGCCTCCGCTTATCTGGAGACAATTACAAGAAA
GCTCTTGAACTTCTTAAAGAGAGGTTTggaaattctcaaattttgaaaac
tgttcACATGAACAGAATTATCGAACTTGAATCTGTTTGTGACATTTCTG
AGGTGAAAGAATTGAGAAAACTTTACGATTCTGTAGAAACAGAAATAAGA
AACTTGGAATCTTTGAGCATGAAGCATGATGAGTATGGGC

Coding sequence (CDS) from alignment at scaffold_407:370366..370905

>TCONS_00064103 ID=TCONS_00064103|Name=TCONS_00064103|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_407:370366..370905 (Clytia hemisphaerica)
TACGAggtaaaaactaaaactaaattAACCTCAATTAACAGTTTTATCGC
TAGACATTATGCAAATTCAGTGGCACCTCAAATTGAAAGCTCTCCTTCCA
TCTCTCAATCGAATCCCTCATTTTCTTCAAGCACGGGTGTGAAAGTCAAA
TTACCGACCTTaaatatcaaaaagttttctGGTGAACCCTCTGAATACCA
GTCATTTATCGAGTCATTCACTGAAGCTATTGATAAGAACAATAGTATTC
CACCGATTCAAAAGATGAATTATTTGATCGGATTTGTAACGGGTGAGGCT
GAAAGTCTTTTAAAAGGCCTCCGCTTATCTGGAGACAATTACAAGAAAGC
TCTTGAACTTCTTAAAGAGAGGTTTggaaattctcaaattttgaaaactg
ttcACATGAACAGAATTATCGAACTTGAATCTGTTTGTGACATTTCTGAG
GTGAAAGAATTGAGAAAACTTTACGATTCTGTAGAAACAGAAATAAGAAA
CTTGGAATCTTTGAGCATGAAGCATGATGAGTATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040191XLOC_040191Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064103-proteinTCONS_00064103-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064103-exon-scaffold_407-1491911889:370366..370905TCONS_00064103-exon-scaffold_407-1491911889:370366..370905Clytia hemisphaericaexon
TCONS_00064103-exon-scaffold_407-1510915933:370366..370905TCONS_00064103-exon-scaffold_407-1510915933:370366..370905Clytia hemisphaericaexon
TCONS_00064103-exon-scaffold_407-1575043694:370366..370905TCONS_00064103-exon-scaffold_407-1575043694:370366..370905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:370366..370905 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.5879	2.33714	0.780369	0.495136	2.15488	1.57461	3.09884	4.64771	2.21015	2.17803	2.79373	2.68564	2.86879	3.28417	3.1055	8.17396	3.53092	5.76155	2.05662	1.36681	2.89007	1.3639	0.864488	1.23412	2.53952	3.73168	0.479457	0.619141	0.637499	1.73836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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