TCONS_00064090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064090
Unique NameTCONS_00064090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064090 ID=TCONS_00064090|Name=TCONS_00064090|organism=Clytia hemisphaerica|type=transcript|length=433bp
GGAATTGGCAGTGTTGGTTAAACTTGTTTTGTGTGGAAAATTTATTGTAT
TTTCCTGACAATGTTGACAAAGGTAAAACATACCAGGTATTTGGTAGATT
AAGTCCCTCAATTCCTCGTCTTGGTCAATCAAATTAATGTTCTTTAGCAG
TTTTAGTTAGCATGGTCGATGGACTTCTTGTCCACAGGAGCCGCATTTTA
AGAGTGAATCGTCATGCATTTTTACTCTATATGACTGGTTGCATATTTGA
CATATGTCCGGAAAATAGCTCTGTATGACCACACACAACTTTTCAATTGC
TTCGTCTTTGTTCATTGTGTTGGTTGTTTTTGACAGGAAATTCAGTGTTT
CGATGATGGGATCCTTTCGGCATGATTTCAGGGTTTTTATGTTATCTTTA
GTTGGCTTTTTTGGATTGTAGAGTCTGAGGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_407:52813..53245

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064090 ID=TCONS_00064090|Name=TCONS_00064090|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at scaffold_407:52813..53245 (Clytia hemisphaerica)
CTGCCTCAGACTCTACAATCCAAAAAAGCCAACTAAAGATAACATAAAAA
CCCTGAAATCATGCCGAAAGGATCCCATCATCGAAACACTGAATTTCCTG
TCAAAAACAACCAACACAATGAACAAAGACGAAGCAATTGAAAAGTTGTG
TGTGGTCATACAGAGCTATTTTCCGGACATATGTCAAATATGCAACCAGT
CATATAGAGTAAAAATGCATGACGATTCACTCTTAAAATGCGGCTCCTGT
GGACAAGAAGTCCATCGACCATGCTAACTAAAACTGCTAAAGAACATTAA
TTTGATTGACCAAGACGAGGAATTGAGGGACTTAATCTACCAAATACCTG
GTATGTTTTACCTTTGTCAACATTGTCAGGAAAATACAATAAATTTTCCA
CACAAAACAAGTTTAACCAACACTGCCAATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040178XLOC_040178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064090-exon-scaffold_407-1491911889:52813..53245TCONS_00064090-exon-scaffold_407-1491911889:52813..53245Clytia hemisphaericaexon
TCONS_00064090-exon-scaffold_407-1510915933:52813..53245TCONS_00064090-exon-scaffold_407-1510915933:52813..53245Clytia hemisphaericaexon
TCONS_00064090-exon-scaffold_407-1575043694:52813..53245TCONS_00064090-exon-scaffold_407-1575043694:52813..53245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:52813..53245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88198	2.0101	3.4447	3.70569	0.857519	1.44748	1.4693	1.64016	1.2936	0	1.3372	2.12236	1.19886	2.04354	1.12801	1.04914	0.951179	1.51675	2.02037	2.69124	0.517342	1.71847	0.654604	0.817118	1.03493	1.37015	2.51436	1.46995	1.31745	0.920911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top