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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064089 ID=TCONS_00064089|Name=TCONS_00064089|organism=Clytia hemisphaerica|type=transcript|length=2844bp
GAATACCTCATAGAATACAGGTATATAAAACAAGTCTGTTTCAAAACGGT
AACTTAAATCATCCCACTCATCTTGggaatgttttcaaaatttagctgTG
GTGCAGCCATTATGTTTTGTGTCAGTTTCTTTTTGAACAAATAAGATAAT
TGTTTAAACAATTAACTTTATTCGATCGGCCAATTCGATCGATCAAGGTT
GGCTCTCTTTGAGTAGAAGAAGTAGAGCAACGTCTCTCTGTCTTCGTTGT
TGTGTCGTGATTTGTCACATcatattaattttgattttgatttgtcCATT
TAATTGGTCAGGTTAACTTTGATTCAATCGAATCGACATTGGCTTTTGAT
GTATTTGTATTGAGTTATTGATGTCAGTTGTTGTGTCACTTGATATTGAC
ATTTGAGTATCACCGTTATTGTCATCTTTTTGATTTACCGATcgatcaac
caatcaaaattagcGAATATTTGACTTCAGCCAATCAAAGCTTACCATGA
CATCTTCACTTGACATCCCAATGGTGGATGAGATTTTATTGAACTCGATT
ACCGGCACCATTCCAGATCTCGGACACATCGATATCGATAAATTGGACAG
TGACGATTTGGATACAGAAGACACAACAGAGTCACAACAGGTGCAACATA
ACAACAACAATATTGAGAACAACGCCAACAACGATCGCAAGACGCCAATC
GATTCATCCAACATGATGTCGCCGCTTCAACAACAAAGCACAACACCCGC
CACACAAACCACGACCAATACAACGACACAACAAACCAAACAATTACATC
AACAACAATTCGCGCAACAACACCGACAGCAGCAACAACCGACTCCTACA
AcccaacaacaacaaagaaaagTCAATTTGGGGCCCAACTTTGATCGTCT
GGGAATCCTCAACGATGGCAACGATGTCCAATCTGCGACAGCTGCACCTT
TCTTCGCTAAAGCTTTACAACAACACGGTGGCACGACATTGGGCGCCATC
TTACAAGCACATCAACATGCTATCCAGCAACAGTTACAACGAGAAAACAT
CTTAATGCAACAAGTGCAACACCCAATGTTTCAACAAAATGTTCCCTTCA
ACAATTTATACCAGCAGCAACAACAAGCTCAACAACAAGCCCAGCAACAG
GCTCAACAACAGAGAGCACAAAACGATACACACGTGACAAAAACACAACA
ACAGGCAACCAGAACAAACCACCCAATCGTTGCTGACCAGACACAACAGA
AACAACAGCAGAGACGAAGCGACGACCAAATCGTACCCAACCCACAAATC
CTGCCATCACCAGATCACTGGttgcaacaacaaaaacaatcgCGACAACA
ACACAGTAAACAACATCAAAAACAAATCGCTCAGCAACTCAAACAAAATG
CTCACAACAAACAAGAGAACACCCGTGCGACCgctaatcaaactttaaaa
cgTAAAAACAGTCCTGAgaggtatttcattttcaacaACGAGAACACTCG
CGATCAGCAATCGCAAAACATAAAACACGAAGACGACCATGGCAAGATTA
TGCCACCAAAGAACTCGGTCTTCGTCAGATATCAATCAGAAAACAACCGA
AGATTACCAGGTTTTAACGAAGCCTTCGTCAATTAtattgaaaaactaaa
aatgaaagaacaATATTTGAAAGCAATGTTTCATCAACAAGGTGTTAACA
TTCAACAACTTCAAGCCAATCCATTTTACCGTCAAATGTTGATGCAACAA
CAATTACAACAAATTCCATTTCAGTTTCAACAAATTCCTCAAGTGTTTCC
ACCAATATTCAACGCACAACAATACCAACAACACTTGCAACAGCAAGCAC
AACAGCAACAGCAACAGCAAGctcagcaacaacaacaacagcaacagcaa
cagcaacaaaaacaaagattGATTCGTGAGAGACCGGCTGACCTTGAACC
CATTCAACGACCAGAAGCCAAGCGGGCGCGCCGAAACCTTAACCGCCATC
ACAGCGCCCCAAATATGgacaacaacaaacaacaacaacagcaacaaatA
ATGGCTGAAAAAATGAGGGCTCAAACTCCGAAACCTCTTAAAATAAACCT
TGAAAAAGAACTCCCTAAACCAGAAGCGAAATTAGAGGTCAAAAAAGTTA
ACAACGTTCCAATACGTGACGTTAAAGATTGCGATATCATCAAAATCGCC
GCTAAAAATATCCGCGAATGCAACGAAGATCCAAGCAAGGAGGATGATGC
TGCGAATTTTGATTTCGATTTTCTCAATGACGCGGCAACAGATGATAAAA
GCTCTACTGCTGAAGATTTATTTCAATTTACGGACACTAAAGAAACTTCG
GACATTACGGGAGGTCAAATCGAGGACAAGAAAGCTTTATCGAATATTGA
AGACCCTATTGAGATTCTAACGGATGAAAATAGTCGGCAAAGTCATAAAG
ATGACGAGCAAAGCTCTTCTGAAGAGGCGGATTTAAAAGCCGTGTTTGGA
GATGCGGATTTAGCAGCTGGTAATTATGATAATTTATTCAACGGGAACTC
GGACGAACATTATTTCCAAGCATTCAAGGATAACAATTTATCACTCTTTA
CAAGTTTACAAGAGAAAAGTGATTCTaatgatgaaatttcaaaactttta
caTAGTCCTTTAGATTTTCTTAATGAAAAATTCCTTAACCCTTAgataat
gaatatttttgtgatGAAAGTTTTAGATGTGTAAATATTGAATTGTAATT
AGAGAATCTTTCTAGTGTCTTGTGAGTTATCAATATGTTTCGACTAGCGA
AAAATCGCTGCATTGAAATTCATTTCGTCCAGTTTTTTAAgagc Run BLAST on NCBI protein sequence of Putative cnidarian restricted protein >TCONS_00064089-protein ID=TCONS_00064089-protein|Name=Putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp
MTSSLDIPMVDEILLNSITGTIPDLGHIDIDKLDSDDLDTEDTTESQQVQ
HNNNNIENNANNDRKTPIDSSNMMSPLQQQSTTPATQTTTNTTTQQTKQL
HQQQFAQQHRQQQQPTPTTQQQQRKVNLGPNFDRLGILNDGNDVQSATAA
PFFAKALQQHGGTTLGAILQAHQHAIQQQLQRENILMQQVQHPMFQQNVP
FNNLYQQQQQAQQQAQQQAQQQRAQNDTHVTKTQQQATRTNHPIVADQTQ
QKQQQRRSDDQIVPNPQILPSPDHWLQQQKQSRQQHSKQHQKQIAQQLKQ
NAHNKQENTRATANQTLKRKNSPERYFIFNNENTRDQQSQNIKHEDDHGK
IMPPKNSVFVRYQSENNRRLPGFNEAFVNYIEKLKMKEQYLKAMFHQQGV
NIQQLQANPFYRQMLMQQQLQQIPFQFQQIPQVFPPIFNAQQYQQHLQQQ
AQQQQQQQAQQQQQQQQQQQQKQRLIRERPADLEPIQRPEAKRARRNLNR
HHSAPNMDNNKQQQQQQIMAEKMRAQTPKPLKINLEKELPKPEAKLEVKK
VNNVPIRDVKDCDIIKIAAKNIRECNEDPSKEDDAANFDFDFLNDAATDD
KSSTAEDLFQFTDTKETSDITGGQIEDKKALSNIEDPIEILTDENSRQSH
KDDEQSSSEEADLKAVFGDADLAAGNYDNLFNGNSDEHYFQAFKDNNLSL
FTSLQEKSDSNDEISKLLHSPLDFLNEKFLNP Run BLAST on NCBI transcript from alignment at scaffold_407:8236..11079 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064089 ID=TCONS_00064089|Name=TCONS_00064089|organism=Clytia hemisphaerica|type=transcript|length=2844bp|location=Sequence derived from alignment at scaffold_407:8236..11079 (Clytia hemisphaerica)
gctcTTAAAAAACTGGACGAAATGAATTTCAATGCAGCGATTTTTCGCTA
GTCGAAACATATTGATAACTCACAAGACACTAGAAAGATTCTCTAATTAC
AATTCAATATTTACACATCTAAAACTTTCatcacaaaaatattcattatc
TAAGGGTTAAGGAATTTTTCATTAAGAAAATCTAAAGGACTAtgtaaaag
ttttgaaatttcatcattAGAATCACTTTTCTCTTGTAAACTTGTAAAGA
GTGATAAATTGTTATCCTTGAATGCTTGGAAATAATGTTCGTCCGAGTTC
CCGTTGAATAAATTATCATAATTACCAGCTGCTAAATCCGCATCTCCAAA
CACGGCTTTTAAATCCGCCTCTTCAGAAGAGCTTTGCTCGTCATCTTTAT
GACTTTGCCGACTATTTTCATCCGTTAGAATCTCAATAGGGTCTTCAATA
TTCGATAAAGCTTTCTTGTCCTCGATTTGACCTCCCGTAATGTCCGAAGT
TTCTTTAGTGTCCGTAAATTGAAATAAATCTTCAGCAGTAGAGCTTTTAT
CATCTGTTGCCGCGTCATTGAGAAAATCGAAATCAAAATTCGCAGCATCA
TCCTCCTTGCTTGGATCTTCGTTGCATTCGCGGATATTTTTAGCGGCGAT
TTTGATGATATCGCAATCTTTAACGTCACGTATTGGAACGTTGTTAACTT
TTTTGACCTCTAATTTCGCTTCTGGTTTAGGGAGTTCTTTTTCAAGGTTT
ATTTTAAGAGGTTTCGGAGTTTGAGCCCTCATTTTTTCAGCCATTatttg
ttgctgttgttgttgtttgttgttgtcCATATTTGGGGCGCTGTGATGGC
GGTTAAGGTTTCGGCGCGCCCGCTTGGCTTCTGGTCGTTGAATGGGTTCA
AGGTCAGCCGGTCTCTCACGAATCaatctttgtttttgttgctgttgctg
ttgctgttgttgttgttgctgagCTTGCTGTTGCTGTTGCTGTTGTGCTT
GCTGTTGCAAGTGTTGTTGGTATTGTTGTGCGTTGAATATTGGTGGAAAC
ACTTGAGGAATTTGTTGAAACTGAAATGGAATTTGTTGTAATTGTTGTTG
CATCAACATTTGACGGTAAAATGGATTGGCTTGAAGTTGTTGAATGTTAA
CACCTTGTTGATGAAACATTGCTTTCAAATATtgttctttcatttttagt
ttttcaataTAATTGACGAAGGCTTCGTTAAAACCTGGTAATCTTCGGTT
GTTTTCTGATTGATATCTGACGAAGACCGAGTTCTTTGGTGGCATAATCT
TGCCATGGTCGTCTTCGTGTTTTATGTTTTGCGATTGCTGATCGCGAGTG
TTCTCGTtgttgaaaatgaaatacctcTCAGGACTGTTTTTAcgttttaa
agtttgattagcGGTCGCACGGGTGTTCTCTTGTTTGTTGTGAGCATTTT
GTTTGAGTTGCTGAGCGATTTGTTTTTGATGTTGTTTACTGTGTTGTTGT
CGcgattgtttttgttgttgcaaCCAGTGATCTGGTGATGGCAGGATTTG
TGGGTTGGGTACGATTTGGTCGTCGCTTCGTCTCTGCTGTTGTTTCTGTT
GTGTCTGGTCAGCAACGATTGGGTGGTTTGTTCTGGTTGCCTGTTGTTGT
GTTTTTGTCACGTGTGTATCGTTTTGTGCTCTCTGTTGTTGAGCCTGTTG
CTGGGCTTGTTGTTGAGCTTGTTGTTGCTGCTGGTATAAATTGTTGAAGG
GAACATTTTGTTGAAACATTGGGTGTTGCACTTGTTGCATTAAGATGTTT
TCTCGTTGTAACTGTTGCTGGATAGCATGTTGATGTGCTTGTAAGATGGC
GCCCAATGTCGTGCCACCGTGTTGTTGTAAAGCTTTAGCGAAGAAAGGTG
CAGCTGTCGCAGATTGGACATCGTTGCCATCGTTGAGGATTCCCAGACGA
TCAAAGTTGGGCCCCAAATTGActtttctttgttgttgttgggTTGTAGG
AGTCGGTTGTTGCTGCTGTCGGTGTTGTTGCGCGAATTGTTGTTGATGTA
ATTGTTTGGTTTGTTGTGTCGTTGTATTGGTCGTGGTTTGTGTGGCGGGT
GTTGTGCTTTGTTGTTGAAGCGGCGACATCATGTTGGATGAATCGATTGG
CGTCTTGCGATCGTTGTTGGCGTTGTTCTCAATATTGTTGTTGTTATGTT
GCACCTGTTGTGACTCTGTTGTGTCTTCTGTATCCAAATCGTCACTGTCC
AATTTATCGATATCGATGTGTCCGAGATCTGGAATGGTGCCGGTAATCGA
GTTCAATAAAATCTCATCCACCATTGGGATGTCAAGTGAAGATGTCATGG
TAAGCTTTGATTGGCTGAAGTCAAATATTCgctaattttgattggttgat
cgATCGGTAAATCAAAAAGATGACAATAACGGTGATACTCAAATGTCAAT
ATCAAGTGACACAACAACTGACATCAATAACTCAATACAAATACATCAAA
AGCCAATGTCGATTCGATTGAATCAAAGTTAACCTGACCAATTAAATGga
caaatcaaaatcaaaattaatatgATGTGACAAATCACGACACAACAACG
AAGACAGAGAGACGTTGCTCTACTTCTTCTACTCAAAGAGAGCCAACCTT
GATCGATCGAATTGGCCGATCGAATAAAGTTAATTGTTTAAACAATTATC
TTATTTGTTCAAAAAGAAACTGACACAAAACATAATGGCTGCACCAcagc
taaattttgaaaacattccCAAGATGAGTGGGATGATTTAAGTTACCGTT
TTGAAACAGACTTGTTTTATATACCTGTATTCTATGAGGTATTC Coding sequence (CDS) from alignment at scaffold_407:8236..11079 >TCONS_00064089 ID=TCONS_00064089|Name=TCONS_00064089|organism=Clytia hemisphaerica|type=CDS|length=2199bp|location=Sequence derived from alignment at scaffold_407:8236..11079 (Clytia hemisphaerica)
cTAAGGGTTAAGGAATTTTTCATTAAGAAAATCTAAAGGACTAtgtaaaa
gttttgaaatttcatcattAGAATCACTTTTCTCTTGTAAACTTGTAAAG
AGTGATAAATTGTTATCCTTGAATGCTTGGAAATAATGTTCGTCCGAGTT
CCCGTTGAATAAATTATCATAATTACCAGCTGCTAAATCCGCATCTCCAA
ACACGGCTTTTAAATCCGCCTCTTCAGAAGAGCTTTGCTCGTCATCTTTA
TGACTTTGCCGACTATTTTCATCCGTTAGAATCTCAATAGGGTCTTCAAT
ATTCGATAAAGCTTTCTTGTCCTCGATTTGACCTCCCGTAATGTCCGAAG
TTTCTTTAGTGTCCGTAAATTGAAATAAATCTTCAGCAGTAGAGCTTTTA
TCATCTGTTGCCGCGTCATTGAGAAAATCGAAATCAAAATTCGCAGCATC
ATCCTCCTTGCTTGGATCTTCGTTGCATTCGCGGATATTTTTAGCGGCGA
TTTTGATGATATCGCAATCTTTAACGTCACGTATTGGAACGTTGTTAACT
TTTTTGACCTCTAATTTCGCTTCTGGTTTAGGGAGTTCTTTTTCAAGGTT
TATTTTAAGAGGTTTCGGAGTTTGAGCCCTCATTTTTTCAGCCATTattt
gttgctgttgttgttgtttgttgttgtcCATATTTGGGGCGCTGTGATGG
CGGTTAAGGTTTCGGCGCGCCCGCTTGGCTTCTGGTCGTTGAATGGGTTC
AAGGTCAGCCGGTCTCTCACGAATCaatctttgtttttgttgctgttgct
gttgctgttgttgttgttgctgagCTTGCTGTTGCTGTTGCTGTTGTGCT
TGCTGTTGCAAGTGTTGTTGGTATTGTTGTGCGTTGAATATTGGTGGAAA
CACTTGAGGAATTTGTTGAAACTGAAATGGAATTTGTTGTAATTGTTGTT
GCATCAACATTTGACGGTAAAATGGATTGGCTTGAAGTTGTTGAATGTTA
ACACCTTGTTGATGAAACATTGCTTTCAAATATtgttctttcatttttag
tttttcaataTAATTGACGAAGGCTTCGTTAAAACCTGGTAATCTTCGGT
TGTTTTCTGATTGATATCTGACGAAGACCGAGTTCTTTGGTGGCATAATC
TTGCCATGGTCGTCTTCGTGTTTTATGTTTTGCGATTGCTGATCGCGAGT
GTTCTCGTtgttgaaaatgaaatacctcTCAGGACTGTTTTTAcgtttta
aagtttgattagcGGTCGCACGGGTGTTCTCTTGTTTGTTGTGAGCATTT
TGTTTGAGTTGCTGAGCGATTTGTTTTTGATGTTGTTTACTGTGTTGTTG
TCGcgattgtttttgttgttgcaaCCAGTGATCTGGTGATGGCAGGATTT
GTGGGTTGGGTACGATTTGGTCGTCGCTTCGTCTCTGCTGTTGTTTCTGT
TGTGTCTGGTCAGCAACGATTGGGTGGTTTGTTCTGGTTGCCTGTTGTTG
TGTTTTTGTCACGTGTGTATCGTTTTGTGCTCTCTGTTGTTGAGCCTGTT
GCTGGGCTTGTTGTTGAGCTTGTTGTTGCTGCTGGTATAAATTGTTGAAG
GGAACATTTTGTTGAAACATTGGGTGTTGCACTTGTTGCATTAAGATGTT
TTCTCGTTGTAACTGTTGCTGGATAGCATGTTGATGTGCTTGTAAGATGG
CGCCCAATGTCGTGCCACCGTGTTGTTGTAAAGCTTTAGCGAAGAAAGGT
GCAGCTGTCGCAGATTGGACATCGTTGCCATCGTTGAGGATTCCCAGACG
ATCAAAGTTGGGCCCCAAATTGActtttctttgttgttgttgggTTGTAG
GAGTCGGTTGTTGCTGCTGTCGGTGTTGTTGCGCGAATTGTTGTTGATGT
AATTGTTTGGTTTGTTGTGTCGTTGTATTGGTCGTGGTTTGTGTGGCGGG
TGTTGTGCTTTGTTGTTGAAGCGGCGACATCATGTTGGATGAATCGATTG
GCGTCTTGCGATCGTTGTTGGCGTTGTTCTCAATATTGTTGTTGTTATGT
TGCACCTGTTGTGACTCTGTTGTGTCTTCTGTATCCAAATCGTCACTGTC
CAATTTATCGATATCGATGTGTCCGAGATCTGGAATGGTGCCGGTAATCG
AGTTCAATAAAATCTCATCCACCATTGGGATGTCAAGTGAAGATGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064089-exon-scaffold_407-1491911889:8236..11079 | TCONS_00064089-exon-scaffold_407-1491911889:8236..11079 | Clytia hemisphaerica | exon |
| TCONS_00064089-exon-scaffold_407-1510915933:8236..11079 | TCONS_00064089-exon-scaffold_407-1510915933:8236..11079 | Clytia hemisphaerica | exon |
| TCONS_00064089-exon-scaffold_407-1575043694:8236..11079 | TCONS_00064089-exon-scaffold_407-1575043694:8236..11079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:8236..11079 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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