|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064082 ID=TCONS_00064082|Name=TCONS_00064082|organism=Clytia hemisphaerica|type=transcript|length=1232bp
CAGATATTTATgctacggccttgaaattttcagggtatgttcaggaagga
taaaggatcctaaaaagccctaaatcccgaaattgatgaatttttcacca
attttcaaaatctcatatgactacccccttaaaTTGGTCGGTGATAAATG
TGTAGAGGACGATCCATGCTCAAGTGGAAACAACCCATGTACCAAAGATC
AGTACTGTTACAACGTTTTCGGGAAAGCTCAATGTATTGATGAATCATGC
CCAGACGATCGTTACTACGAACAACGTTTAGGGCAAAACGATAAAGTGAA
AGAATGTGCTAAAACCAAATGCAACCGCTTCCGTGGACGAGAAAACCAAC
GATGTTGGACTACCAAACAATTCCCTTCATCCATCAAAAGATATCTCTAC
AAATATGATTATAATTTGGACCATGATGCATTCCAATTCACCTATTGGTG
GAATTTCGATCAACGAAAATACAATGTGGATATCAGACTTGTCGATGCTA
CTCATGATACAGGAAACACAATTGACGCACGAAGCAAATTTACCATCGAA
TTCGAGTCAAATAACACAGAATTGAAATTGTACAATTATTACAAAATGAA
AGGCCCTAGCAAAAACCACGTTGTCATGCAGATGGACGTCACAAGTCGAA
GCGATGGTCGTTTAGTATGGCGTTATTTGTATTATTTCTACATTTTTATT
CAGTAAATGATGCACATAcgaccatagtccgtataaaaaaccccggtctg
gaagccttttgtttctttccattgtttcttacttgaacttgcgttgagaa
attagtttgttttgctcgctgtttgatcatgtgattaaatcttaaaccaa
tcctaAGAGgaatacttggtaacgtgatcaaaaactgagcaaatcgattt
tcatcttttgatattaacaaaggaaaaagctagcaaaaagttaaaacaat
tagcttccagaccagggttttttacaCGAACTATGATACGACAGCTATCC
ATATAAATGCAGGCGAGGATCACGTTCGAAAAGAAGCTTTCTAAGTGAAC
GATGATTTTCTTGGCACAACCACATTATCCTTTGTTATAATAATTTAGag
aatcataaaatataatTTGCACTATATCATATCTTGATTGTAACTAGTAT
TCTTCGAAAATTATGCACGttctaaaacttttttttttcaatatcgaATG
AGCAAAGTGAATAATCTAATACAAAATCCAAG Run BLAST on NCBI transcript from alignment at scaffold_407:360837..363606- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064082 ID=TCONS_00064082|Name=TCONS_00064082|organism=Clytia hemisphaerica|type=transcript|length=2770bp|location=Sequence derived from alignment at scaffold_407:360837..363606- (Clytia hemisphaerica)
CAGATATTTATGCTACGGCCTTGAAATTTTCAGGGTATGTTCAGGAAGGA
TAAAGGATCCTAAAAAGCCCTAAATCCCGAAATTGATGAATTTTTCACCA
ATTTTCAAAATCTCATATGACTACCCCCTTAAATTGGTCGGTGATAAATG
TGTAGGTAAGTCTGAAAACGTCTTGTTTGCAGCACCTTTTCCAATTTATT
CGAAACGAAGATCCACTGACTAACTCAAATTATATTCTATACACATTTTC
GACCGTAGCCGCCAATGGTTGCGCAGGCATTTTTTTGTCCGTTTTACCAC
CCTAAAACCGTCCCAGTCTTTTTTTTCGCATCAATAGGCAATAGAAAGAG
GTGTAAAAAAAGGATTGGATCGAGTTTAGGGGGATGATTAAATAATAATA
ATAAAGTGAAACGAGCTTGACCACGCGACTACGGTCGAAAAGGTGTATTC
ATGCAATACCACTCTAGCAGGGGTTTCGAATTGATATTCCTAAGCCAACG
ACTGAAAAACTGACACCAGTGAACCTCTGGATTCAAGATCATGAATCATG
AAGGAGTCCTTAGTTCGACGAATAATTATTTAGACCGGCAGATCATAATT
TTTTTCATTTTTGGCGGGGTCAAAATAAGACCCCAAAGCTGAATTTTTAA
AATGATCTTCTGCGCATTCGAACGATAATGAAGAAAGTTCTTATCTTTCT
CTTGACTTTTTGAAATATCTAATCACTAAACATTTTATCTCGGTATAGAG
GACGATCCATGCTCAAGTGGAAACAACCCATGTACCAAAGATCAGTACTG
TTACAACGTTTTCGGGAAAGCTCAATGTATTGATGAATCATGCCCAGACG
ATCGTTACTACGAACAACGTTTAGGGTGAGTGAACGAACACAAATCTGTA
AAGCCCGAAGGGCTAGATCCGCGGCCTTTATCGAAAAGTGAAGCAAGTTT
TGATAGGCTTTCCTACCAAAGAAATCACGTGACAACAAGCAATTTCACTG
ATTTGAGAAATACGAAATAGCGTTTGCCGCCTACTTTTTTTGATCTTGCC
CTCCGAAAACAAGTTGCCTATCTAGCCCTTGGGGCTTTACAGATATCTGT
GTGAGCGAACTCCTTTCCTTATCTCTTCCTTCGATATCAATATAGGATGA
TTTTGATCCTGGCGTCGAGGGGTGGCTATTTTAATTACTCCCTCTTAAGA
GTGCTCAGCGGTTTTCATGAATGCGAACATGAAGTTTTTTTCATTTTTTG
TAAATGGGTGATATGAGTGAACATGATAGTGTGAAAACATGATTCTCATA
TGTTTTTTACATGTTTGTTTGGATACCGCAATTCTCTGCAAGCCTCGCTT
TTTTAACTGTCAAAGAGTCCCTATACTGAGAAATTTTATAAAAGATGTTG
ATAAAATCTTCCGATGTAAAGAAACTTCTAACAAAATTTATAGGCAAAAC
GATAAAGTGAAAGAATGTGCTAAAACCAAATGCAACCGCTTCCGTGGACG
AGAAAACCAACGATGTTGGACTACCAAACAATTCCCTTCATCCATCAAAA
GATATCTCTACAAATATGATTATAATTTGGACCATGATGCATTCCAATTC
ACCTATTGGTGGAATTTCGATCAACGAAAATACAATGTGGATATCAGACT
TGTCGATGCTACTCATGATACAGGTCGGTTATCTATTAGCTATTTTTTAA
ACGGTCACATTTCATCCTTCTTTCTATAGAATAGATAGGTTGAAATACCT
TAAAGTAACTTATTTCCTCCACTCATAAAATAAATTCTCGCAAATATTAT
TTCCAGGCCAAGCCCTTTTGCCGAAGTCCAAAACTGTATCCTTCGAAATT
TGAAACGCTATAACCCTGAGAAGGTATCAAAACCACGTTACATAGCTTAG
AAGTTTCTCTTTCTATTGGGCACCTTCAATGCCGCCAGATTCAAAAAGTT
GTCAGTTGTTGGGTAGCTGCTGAGAGGAAGGGACAGGTAAAGGTGCAAGG
ACCAGATTAATTTGAAAAAACAACAGTCATTTTCGACCTTGTTTTTGCAG
GAAACACAATTGACGCACGAAGCAAATTTACCATCGAATTCGAGTCAAAT
AACACAGAATTGAAATTGTACAATTATTACAAAATGAAAGGCCCTAGCAA
AAACCACGTTGTCATGCAGATGGACGTCACAAGTCGAAGCGATGGTCGTT
TAGTATGGCGTTATTTGTATTATTTCTACATTTTTATTCAGTAAATGATG
CACATACGACCATAGTCCGTATAAAAAACCCCGGTCTGGAAGCCTTTTGT
TTCTTTCCATTGTTTCTTACTTGAACTTGCGTTGAGAAATTAGTTTGTTT
TGCTCGCTGTTTGATCATGTGATTAAATCTTAAACCAATCCTAAGAGGAA
TACTTGGTAACGTGATCAAAAACTGAGCAAATCGATTTTCATCTTTTGAT
ATTAACAAAGGAAAAAGCTAGCAAAAAGTTAAAACAATTAGCTTCCAGAC
CAGGGTTTTTTACACGAACTATGATACGACAGCTATCCATATAAATGCAG
GCGAGGATCACGTTCGAAAAGAAGCTTTCTAAGTGAACGATGATTTTCTT
GGCACAACCACATTATCCTTTGTTATAATAATTTAGAGAATCATAAAATA
TAATTTGCACTATATCATATCTTGATTGTAACTAGTATTCTTCGAAAATT
ATGCACGTTCTAAAACTTTTTTTTTTCAATATCGAATGAGCAAAGTGAAT
AATCTAATACAAAATCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064082-exon-scaffold_407-1575043694:363452..363606 | TCONS_00064082-exon-scaffold_407-1575043694:363452..363606 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1575043694:362732..362858 | TCONS_00064082-exon-scaffold_407-1575043694:362732..362858 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1575043694:361934..362163 | TCONS_00064082-exon-scaffold_407-1575043694:361934..362163 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1575043694:360837..361556 | TCONS_00064082-exon-scaffold_407-1575043694:360837..361556 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1510915933:363452..363606 | TCONS_00064082-exon-scaffold_407-1510915933:363452..363606 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1510915933:362732..362858 | TCONS_00064082-exon-scaffold_407-1510915933:362732..362858 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1510915933:361934..362163 | TCONS_00064082-exon-scaffold_407-1510915933:361934..362163 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1510915933:360837..361556 | TCONS_00064082-exon-scaffold_407-1510915933:360837..361556 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1491911889:363452..363606 | TCONS_00064082-exon-scaffold_407-1491911889:363452..363606 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1491911889:362732..362858 | TCONS_00064082-exon-scaffold_407-1491911889:362732..362858 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1491911889:361934..362163 | TCONS_00064082-exon-scaffold_407-1491911889:361934..362163 | Clytia hemisphaerica | exon |
| TCONS_00064082-exon-scaffold_407-1491911889:360837..361556 | TCONS_00064082-exon-scaffold_407-1491911889:360837..361556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:360837..363606 - |
Blast
The following BLAST results are available for this feature:
|
