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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064076 ID=TCONS_00064076|Name=TCONS_00064076|organism=Clytia hemisphaerica|type=transcript|length=1556bp
AAAatgccgactatcattcctctctgATGGGAAATTGGCATCcaagaaaa
taggaaaatttagCGGGAaatttagcgtgggcggccgccaatacgccatt
aTAATATCAGATAAGGATAATCCTCACATCATCTTTCGTTGACGACTTAT
AATATGTTGTGCTTTGAGTGTTGGTAAGTTAACCAAAAAATACTAGGAGG
GGCACAAATTGTTTCCCTGAGGTTATGATGAATAAATCCTGGCAGTTTGA
TAACTCGGCTTATATTTAAACACTCTTTAGTTCGACACTAAGAATAAACA
CAATGAAAGCATTGCTAATCACCATAGCAACAATCTCATCTATCATCAAC
ACCATCTCAGGGCACGGTGTTATGGTCATCCCACATAACTGGTTAGATTA
TAAACAATGGGTCAAAACAAGAAGCCATGGTTTTGTGTACGAGTACGTTG
GTATGAAATCACAACAACAGTGTCTTCCTGGCATGTTTTTCCCTCGCGAT
CTTGCGTGCAAGGACTATAATAATTGTGCTGGGTTTATTGAGCCGACAGC
AGCTTGTATGTGGTTCACAAACTACACGTTCATTCAAGAACCAACCCTTG
ATCCTGAGCTATGGACCTATCCCCATGTCGAAGACCCATCGATGGTGAAA
TATAACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGG
GGCGGCTGGCGGAAATCCAGATGGANAAAGACCCATCAATGGTGAAATAT
AACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGC
GGCTGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAA
TGAAAGGAGGATTCGCATACGGACCAAGATTGAAAGATTTGGACCTATCC
TCACATCACAAAGCCTACGTCACTAACTGGACGCGCGGGGAGGCAGTAGA
GGTTGCATGGGGTATCCGAGCGAACCACGGAGGAGGCTATTCTTACAGGC
TATGTAAGATGCCAAAAGAAGGGCGGAAGGCGTTAACAGAGGAATGCTTC
CAGCAAACGCCATTGAGATTCGTCGGTGATAAACAGTGGGTACAGTATGG
GGAAGACGAATCAACTAGATATGAGTTCACCGCAGCCAGAACTGATAATG
GCACCACACCACCAGGATCCCAGTGGACCCGCAACCCAATCCCACCATGT
AATGGCTTCGCTGGCGGTATAAATGAAGATCATCCGTGTAAAAATGGGAC
CCAGTTCCCAGCCCCTGGACCCGGGCTCGAAGGATTCGGTGTtaagttta
aaaacattttatggaCATTTGAGTTTGTGATTATTGACATGTTGCACATT
CCTGAGGACGTTGAACCAGGAGAATACGTGGTTTCGTTCAGATGGGACGG
TGAACAATTTCCACAAGTGTGGAATATGTGCTCCTCTGTNCGTTCAGATG
GGACGGTGAACAATTTCCACAAGTGTGGAATATGTGCTCTTCTGTATGGC
TGAACTGAACAAGGTTGATGTTGGTCTAATATTTGTGACGTCTCatagga
aaaaaa Run BLAST on NCBI protein sequence of TCONS_00064076-protein >TCONS_00064076-protein ID=TCONS_00064076-protein|Name=TCONS_00064076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MXKDPSMVKYNPWRSPGAAPINSPCGAAGGNPDGCLGGPYCGQMKGGFAY
GPRLKDLDLSSHHKAYVTNWTRGEAVEVAWGIRANHGGGYSYRLCKMPKE
GRKALTEECFQQTPLRFVGDKQWVQYGEDESTRYEFTAARTDNGTTPPGS
QWTRNPIPPCNGFAGGINEDHPCKNGTQFPAPGPGLEGFGVKFKNILWTF
EFVIIDMLHIPEDVEPGEYVVSFRWDGEQFPQVWNMCSSXRSDGTVNNFH
KCGICALLYG Run BLAST on NCBI transcript from alignment at scaffold_407:268793..270881- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064076 ID=TCONS_00064076|Name=TCONS_00064076|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at scaffold_407:268793..270881- (Clytia hemisphaerica)
AAAATGCCGACTATCATTCCTCTCTGATGGGAAATTGGCATCCAAGAAAA
TAGGAAAATTTAGCGGGAAATTTAGCGTGGGCGGCCGCCAATACGCCATT
ATAATATCAGATAAGGATAATCCTCACATCATCTTTCGTTGACGACTTAT
AATATGTTGTGCTTTGAGTGTTGGTAAGTTAACCAAAAAATACTAGGAGG
GGCACAAATTGTTTCCCTGAGGTTATGATGAATAAATCCTGGCAGTTTGA
TAACTCGGCTTATATTTAAACACTCTTTAGTTCGACACTAAGAATAAACA
CAATGAAAGCATTGCTAATCACCATAGCAACAATCTCATCTATCATCAAC
ACCATCTCAGGGCACGGTGTTATGGTCATCCCACATAACTGGTTAGATTA
TAAACAATGGGTCAAAACAAGAAGCCATGGTTTTGTGTACGAGTACGTTG
GTATGAAATCACAACAACAGTGTCTTCCTGGCATGTTTTTCCCTCGCGAT
CTTGCGTGCAAGGACTATAATAATTGTGCTGGGTTTATTGAGCCGACAGC
AGCTTGTATGTGGTTCACAAACTACACGTTCATTCAAGAACCAACCCTTG
ATCCTGAGCTATGGACCTATCCCCATGTCGAAGACCCATCGATGGTGAAA
TATAACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGG
GGCGGCTGGCGGAAATCCAGATGGANAAAGACCCATCAATGGTGAAATAT
AACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGC
GGCTGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAA
TGAAAGGAGGATTCGCATACGGACCAAGGTTATACATTTAATTCAAAGTA
GCTTCAGATATTTTCATTAAAAAGGTTGGGTCTTTGAGTTTATATTTCCC
TTTACATGACTGTCTAATAATAATTTTGTAATTGACAAAAAGTTGAAGTG
GGTGCCACAAACCATTTTTTCGTTATCTAACTTGGTTTGTTAGATTCCTC
AAGTGGATTCCTTAATGACTGTTAAGTAAAAGTCACACCTAATTGTGTTA
AAGTAGATAATTGCTATGCTGATGCAGACTTTTTTGCATATTCTATCACA
ACTGTCACAAGTAAGAATTAAACAAACATTCTTTTACATATTAGATTGAA
AGATTTGGACCTATCCTCACATCACAAAGCCTACGTCACTAACTGGACGC
GCGGGGAGGCAGTAGAGGTTGCATGGGGTATCCGAGCGAACCACGGAGGA
GGCTATTCTTACAGGCTATGTAAGATGCCAAAAGAAGGGCGGAAGGCGTT
AACAGAGGAATGCTTCCAGCAAACGCCATTGAGATTCGTCGGTGATAAAC
AGTGGGTACAGTATGGGGAAGACGAATCAACTAGATATGAGTTCACCGCA
GCCAGAACTGATAATGGTAAAGCTATTTCATCAAATTCTTTCTAAACAAT
GCCTGGAGGTGCTTTGGAAAGAATTCGCTGGCCACTTTTATCAACTATTT
ACAACTTAACTTAATATTGTGTGTGAGAATCCATCAAGAAGTCTGATTTA
CCTTTCTTTATTAAAAAGATTCTCTCAAAATGTTTTGCATGATTTAAGGT
TGTTTAGCTAAATATAAAAATCTATTATTCCAGGCACCACACCACCAGGA
TCCCAGTGGACCCGCAACCCAATCCCACCATGTAATGGCTTCGCTGGCGG
TATAAATGAAGATCATCCGTGTAAAAATGGGACCCAGTTCCCAGCCCCTG
GACCCGGGCTCGAAGGATTCGGTGTTAAGTTTAAAAACATTTTATGGACA
TTTGAGTTTGTGATTATTGACATGTTGCACATTCCTGAGGACGTTGAACC
AGGAGAATACGTGGTTTCGTTCAGATGGGACGGTGAACAATTTCCACAAG
TGTGGAATATGTGCTCCTCTGTNCGTTCAGATGGGACGGTGAACAATTTC
CACAAGTGTGGAATATGTGCTCTTCTGTATGGCTGAACTGAACAAGGTTG
ATGTTGGTCTAATATTTGTGACGTCTCATAGGAAAAAAA Coding sequence (CDS) from alignment at scaffold_407:268793..270881- >TCONS_00064076 ID=TCONS_00064076|Name=TCONS_00064076|organism=Clytia hemisphaerica|type=CDS|length=2349bp|location=Sequence derived from alignment at scaffold_407:268793..270881- (Clytia hemisphaerica)
GCACCACACCACCAGGATCCCAGTGGACCCGCAACCCAATCCCACCATGT
AATGGCTTCGCTGGCGGTATAAATGAAGATCATCCGTGTAAAAATGGGAC
CCAGTTCCCAGCCCCTGGACCCGGGCTCGAAGGATTCGGTGTTAAGTTTA
AAAACATTTTATGGACATTTGAGTTTGTGATTATTGACATGTTGCACATT
CCTGAGGACGTTGAACCAGGAGAATACGTGGTTTCGTTCAGATGGGACGG
TGAACAATTTCCACAAGTGTGGAATATGTGCTCCTCTGTNCGTTCAGATG
GGACGGTGAACAATTTCCACAAGTGTGGAATATGTGCTCTTCTGTATGGC
TGAATTGAAAGATTTGGACCTATCCTCACATCACAAAGCCTACGTCACTA
ACTGGACGCGCGGGGAGGCAGTAGAGGTTGCATGGGGTATCCGAGCGAAC
CACGGAGGAGGCTATTCTTACAGGCTATGTAAGATGCCAAAAGAAGGGCG
GAAGGCGTTAACAGAGGAATGCTTCCAGCAAACGCCATTGAGATTCGTCG
GTGATAAACAGTGGGTACAGTATGGGGAAGACGAATCAACTAGATATGAG
TTCACCGCAGCCAGAACTGATAATGATGGANAAAGACCCATCAATGGTGA
AATATAACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGT
GGGGCGGCTGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGG
GCAAATGAAAGGAGGATTCGCATACGGACCAAGGCACCACACCACCAGGA
TCCCAGTGGACCCGCAACCCAATCCCACCATGTAATGGCTTCGCTGGCGG
TATAAATGAAGATCATCCGTGTAAAAATGGGACCCAGTTCCCAGCCCCTG
GACCCGGGCTCGAAGGATTCGGTGTTAAGTTTAAAAACATTTTATGGACA
TTTGAGTTTGTGATTATTGACATGTTGCACATTCCTGAGGACGTTGAACC
AGGAGAATACGTGGTTTCGTTCAGATGGGACGGTGAACAATTTCCACAAG
TGTGGAATATGTGCTCCTCTGTNCGTTCAGATGGGACGGTGAACAATTTC
CACAAGTGTGGAATATGTGCTCTTCTGTATGGCTGAATTGAAAGATTTGG
ACCTATCCTCACATCACAAAGCCTACGTCACTAACTGGACGCGCGGGGAG
GCAGTAGAGGTTGCATGGGGTATCCGAGCGAACCACGGAGGAGGCTATTC
TTACAGGCTATGTAAGATGCCAAAAGAAGGGCGGAAGGCGTTAACAGAGG
AATGCTTCCAGCAAACGCCATTGAGATTCGTCGGTGATAAACAGTGGGTA
CAGTATGGGGAAGACGAATCAACTAGATATGAGTTCACCGCAGCCAGAAC
TGATAATGATGGANAAAGACCCATCAATGGTGAAATATAACCCGTGGCGT
TCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGCGGCTGGCGGAAA
TCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAATGAAAGGAGGAT
TCGCATACGGACCAAGGCACCACACCACCAGGATCCCAGTGGACCCGCAA
CCCAATCCCACCATGTAATGGCTTCGCTGGCGGTATAAATGAAGATCATC
CGTGTAAAAATGGGACCCAGTTCCCAGCCCCTGGACCCGGGCTCGAAGGA
TTCGGTGTTAAGTTTAAAAACATTTTATGGACATTTGAGTTTGTGATTAT
TGACATGTTGCACATTCCTGAGGACGTTGAACCAGGAGAATACGTGGTTT
CGTTCAGATGGGACGGTGAACAATTTCCACAAGTGTGGAATATGTGCTCC
TCTGTNCGTTCAGATGGGACGGTGAACAATTTCCACAAGTGTGGAATATG
TGCTCTTCTGTATGGCTGAATTGAAAGATTTGGACCTATCCTCACATCAC
AAAGCCTACGTCACTAACTGGACGCGCGGGGAGGCAGTAGAGGTTGCATG
GGGTATCCGAGCGAACCACGGAGGAGGCTATTCTTACAGGCTATGTAAGA
TGCCAAAAGAAGGGCGGAAGGCGTTAACAGAGGAATGCTTCCAGCAAACG
CCATTGAGATTCGTCGGTGATAAACAGTGGGTACAGTATGGGGAAGACGA
ATCAACTAGATATGAGTTCACCGCAGCCAGAACTGATAATGATGGANAAA
GACCCATCAATGGTGAAATATAACCCGTGGCGTTCTCCTGGCGCCGCACC
AATTAATTCACCCTGTGGGGCGGCTGGCGGAAATCCAGATGGATGTTTGG
GCGGACCATACTGTGGGCAAATGAAAGGAGGATTCGCATACGGACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064076-exon-scaffold_407-1575043694:270004..270881 | TCONS_00064076-exon-scaffold_407-1575043694:270004..270881 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1575043694:269416..269687 | TCONS_00064076-exon-scaffold_407-1575043694:269416..269687 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1575043694:268793..269198 | TCONS_00064076-exon-scaffold_407-1575043694:268793..269198 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1510915933:270004..270881 | TCONS_00064076-exon-scaffold_407-1510915933:270004..270881 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1510915933:269416..269687 | TCONS_00064076-exon-scaffold_407-1510915933:269416..269687 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1510915933:268793..269198 | TCONS_00064076-exon-scaffold_407-1510915933:268793..269198 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1491911889:270004..270881 | TCONS_00064076-exon-scaffold_407-1491911889:270004..270881 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1491911889:269416..269687 | TCONS_00064076-exon-scaffold_407-1491911889:269416..269687 | Clytia hemisphaerica | exon |
| TCONS_00064076-exon-scaffold_407-1491911889:268793..269198 | TCONS_00064076-exon-scaffold_407-1491911889:268793..269198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:268793..270881 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004302 | Cellulose/chitin-bd_N |
Blast
The following BLAST results are available for this feature:
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