TCONS_00064076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064076
Unique NameTCONS_00064076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064076 ID=TCONS_00064076|Name=TCONS_00064076|organism=Clytia hemisphaerica|type=transcript|length=1556bp
AAAatgccgactatcattcctctctgATGGGAAATTGGCATCcaagaaaa
taggaaaatttagCGGGAaatttagcgtgggcggccgccaatacgccatt
aTAATATCAGATAAGGATAATCCTCACATCATCTTTCGTTGACGACTTAT
AATATGTTGTGCTTTGAGTGTTGGTAAGTTAACCAAAAAATACTAGGAGG
GGCACAAATTGTTTCCCTGAGGTTATGATGAATAAATCCTGGCAGTTTGA
TAACTCGGCTTATATTTAAACACTCTTTAGTTCGACACTAAGAATAAACA
CAATGAAAGCATTGCTAATCACCATAGCAACAATCTCATCTATCATCAAC
ACCATCTCAGGGCACGGTGTTATGGTCATCCCACATAACTGGTTAGATTA
TAAACAATGGGTCAAAACAAGAAGCCATGGTTTTGTGTACGAGTACGTTG
GTATGAAATCACAACAACAGTGTCTTCCTGGCATGTTTTTCCCTCGCGAT
CTTGCGTGCAAGGACTATAATAATTGTGCTGGGTTTATTGAGCCGACAGC
AGCTTGTATGTGGTTCACAAACTACACGTTCATTCAAGAACCAACCCTTG
ATCCTGAGCTATGGACCTATCCCCATGTCGAAGACCCATCGATGGTGAAA
TATAACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGG
GGCGGCTGGCGGAAATCCAGATGGANAAAGACCCATCAATGGTGAAATAT
AACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGC
GGCTGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAA
TGAAAGGAGGATTCGCATACGGACCAAGATTGAAAGATTTGGACCTATCC
TCACATCACAAAGCCTACGTCACTAACTGGACGCGCGGGGAGGCAGTAGA
GGTTGCATGGGGTATCCGAGCGAACCACGGAGGAGGCTATTCTTACAGGC
TATGTAAGATGCCAAAAGAAGGGCGGAAGGCGTTAACAGAGGAATGCTTC
CAGCAAACGCCATTGAGATTCGTCGGTGATAAACAGTGGGTACAGTATGG
GGAAGACGAATCAACTAGATATGAGTTCACCGCAGCCAGAACTGATAATG
GCACCACACCACCAGGATCCCAGTGGACCCGCAACCCAATCCCACCATGT
AATGGCTTCGCTGGCGGTATAAATGAAGATCATCCGTGTAAAAATGGGAC
CCAGTTCCCAGCCCCTGGACCCGGGCTCGAAGGATTCGGTGTtaagttta
aaaacattttatggaCATTTGAGTTTGTGATTATTGACATGTTGCACATT
CCTGAGGACGTTGAACCAGGAGAATACGTGGTTTCGTTCAGATGGGACGG
TGAACAATTTCCACAAGTGTGGAATATGTGCTCCTCTGTNCGTTCAGATG
GGACGGTGAACAATTTCCACAAGTGTGGAATATGTGCTCTTCTGTATGGC
TGAACTGAACAAGGTTGATGTTGGTCTAATATTTGTGACGTCTCatagga
aaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00064076-protein

>TCONS_00064076-protein ID=TCONS_00064076-protein|Name=TCONS_00064076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MXKDPSMVKYNPWRSPGAAPINSPCGAAGGNPDGCLGGPYCGQMKGGFAY
GPRLKDLDLSSHHKAYVTNWTRGEAVEVAWGIRANHGGGYSYRLCKMPKE
GRKALTEECFQQTPLRFVGDKQWVQYGEDESTRYEFTAARTDNGTTPPGS
QWTRNPIPPCNGFAGGINEDHPCKNGTQFPAPGPGLEGFGVKFKNILWTF
EFVIIDMLHIPEDVEPGEYVVSFRWDGEQFPQVWNMCSSXRSDGTVNNFH
KCGICALLYG
Run BLAST on NCBI

transcript from alignment at scaffold_407:268793..270881-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064076 ID=TCONS_00064076|Name=TCONS_00064076|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at scaffold_407:268793..270881- (Clytia hemisphaerica)
AAAATGCCGACTATCATTCCTCTCTGATGGGAAATTGGCATCCAAGAAAA
TAGGAAAATTTAGCGGGAAATTTAGCGTGGGCGGCCGCCAATACGCCATT
ATAATATCAGATAAGGATAATCCTCACATCATCTTTCGTTGACGACTTAT
AATATGTTGTGCTTTGAGTGTTGGTAAGTTAACCAAAAAATACTAGGAGG
GGCACAAATTGTTTCCCTGAGGTTATGATGAATAAATCCTGGCAGTTTGA
TAACTCGGCTTATATTTAAACACTCTTTAGTTCGACACTAAGAATAAACA
CAATGAAAGCATTGCTAATCACCATAGCAACAATCTCATCTATCATCAAC
ACCATCTCAGGGCACGGTGTTATGGTCATCCCACATAACTGGTTAGATTA
TAAACAATGGGTCAAAACAAGAAGCCATGGTTTTGTGTACGAGTACGTTG
GTATGAAATCACAACAACAGTGTCTTCCTGGCATGTTTTTCCCTCGCGAT
CTTGCGTGCAAGGACTATAATAATTGTGCTGGGTTTATTGAGCCGACAGC
AGCTTGTATGTGGTTCACAAACTACACGTTCATTCAAGAACCAACCCTTG
ATCCTGAGCTATGGACCTATCCCCATGTCGAAGACCCATCGATGGTGAAA
TATAACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGG
GGCGGCTGGCGGAAATCCAGATGGANAAAGACCCATCAATGGTGAAATAT
AACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGC
GGCTGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAA
TGAAAGGAGGATTCGCATACGGACCAAGGTTATACATTTAATTCAAAGTA
GCTTCAGATATTTTCATTAAAAAGGTTGGGTCTTTGAGTTTATATTTCCC
TTTACATGACTGTCTAATAATAATTTTGTAATTGACAAAAAGTTGAAGTG
GGTGCCACAAACCATTTTTTCGTTATCTAACTTGGTTTGTTAGATTCCTC
AAGTGGATTCCTTAATGACTGTTAAGTAAAAGTCACACCTAATTGTGTTA
AAGTAGATAATTGCTATGCTGATGCAGACTTTTTTGCATATTCTATCACA
ACTGTCACAAGTAAGAATTAAACAAACATTCTTTTACATATTAGATTGAA
AGATTTGGACCTATCCTCACATCACAAAGCCTACGTCACTAACTGGACGC
GCGGGGAGGCAGTAGAGGTTGCATGGGGTATCCGAGCGAACCACGGAGGA
GGCTATTCTTACAGGCTATGTAAGATGCCAAAAGAAGGGCGGAAGGCGTT
AACAGAGGAATGCTTCCAGCAAACGCCATTGAGATTCGTCGGTGATAAAC
AGTGGGTACAGTATGGGGAAGACGAATCAACTAGATATGAGTTCACCGCA
GCCAGAACTGATAATGGTAAAGCTATTTCATCAAATTCTTTCTAAACAAT
GCCTGGAGGTGCTTTGGAAAGAATTCGCTGGCCACTTTTATCAACTATTT
ACAACTTAACTTAATATTGTGTGTGAGAATCCATCAAGAAGTCTGATTTA
CCTTTCTTTATTAAAAAGATTCTCTCAAAATGTTTTGCATGATTTAAGGT
TGTTTAGCTAAATATAAAAATCTATTATTCCAGGCACCACACCACCAGGA
TCCCAGTGGACCCGCAACCCAATCCCACCATGTAATGGCTTCGCTGGCGG
TATAAATGAAGATCATCCGTGTAAAAATGGGACCCAGTTCCCAGCCCCTG
GACCCGGGCTCGAAGGATTCGGTGTTAAGTTTAAAAACATTTTATGGACA
TTTGAGTTTGTGATTATTGACATGTTGCACATTCCTGAGGACGTTGAACC
AGGAGAATACGTGGTTTCGTTCAGATGGGACGGTGAACAATTTCCACAAG
TGTGGAATATGTGCTCCTCTGTNCGTTCAGATGGGACGGTGAACAATTTC
CACAAGTGTGGAATATGTGCTCTTCTGTATGGCTGAACTGAACAAGGTTG
ATGTTGGTCTAATATTTGTGACGTCTCATAGGAAAAAAA

Coding sequence (CDS) from alignment at scaffold_407:268793..270881-

>TCONS_00064076 ID=TCONS_00064076|Name=TCONS_00064076|organism=Clytia hemisphaerica|type=CDS|length=2349bp|location=Sequence derived from alignment at scaffold_407:268793..270881- (Clytia hemisphaerica)
GCACCACACCACCAGGATCCCAGTGGACCCGCAACCCAATCCCACCATGT
AATGGCTTCGCTGGCGGTATAAATGAAGATCATCCGTGTAAAAATGGGAC
CCAGTTCCCAGCCCCTGGACCCGGGCTCGAAGGATTCGGTGTTAAGTTTA
AAAACATTTTATGGACATTTGAGTTTGTGATTATTGACATGTTGCACATT
CCTGAGGACGTTGAACCAGGAGAATACGTGGTTTCGTTCAGATGGGACGG
TGAACAATTTCCACAAGTGTGGAATATGTGCTCCTCTGTNCGTTCAGATG
GGACGGTGAACAATTTCCACAAGTGTGGAATATGTGCTCTTCTGTATGGC
TGAATTGAAAGATTTGGACCTATCCTCACATCACAAAGCCTACGTCACTA
ACTGGACGCGCGGGGAGGCAGTAGAGGTTGCATGGGGTATCCGAGCGAAC
CACGGAGGAGGCTATTCTTACAGGCTATGTAAGATGCCAAAAGAAGGGCG
GAAGGCGTTAACAGAGGAATGCTTCCAGCAAACGCCATTGAGATTCGTCG
GTGATAAACAGTGGGTACAGTATGGGGAAGACGAATCAACTAGATATGAG
TTCACCGCAGCCAGAACTGATAATGATGGANAAAGACCCATCAATGGTGA
AATATAACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGT
GGGGCGGCTGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGG
GCAAATGAAAGGAGGATTCGCATACGGACCAAGGCACCACACCACCAGGA
TCCCAGTGGACCCGCAACCCAATCCCACCATGTAATGGCTTCGCTGGCGG
TATAAATGAAGATCATCCGTGTAAAAATGGGACCCAGTTCCCAGCCCCTG
GACCCGGGCTCGAAGGATTCGGTGTTAAGTTTAAAAACATTTTATGGACA
TTTGAGTTTGTGATTATTGACATGTTGCACATTCCTGAGGACGTTGAACC
AGGAGAATACGTGGTTTCGTTCAGATGGGACGGTGAACAATTTCCACAAG
TGTGGAATATGTGCTCCTCTGTNCGTTCAGATGGGACGGTGAACAATTTC
CACAAGTGTGGAATATGTGCTCTTCTGTATGGCTGAATTGAAAGATTTGG
ACCTATCCTCACATCACAAAGCCTACGTCACTAACTGGACGCGCGGGGAG
GCAGTAGAGGTTGCATGGGGTATCCGAGCGAACCACGGAGGAGGCTATTC
TTACAGGCTATGTAAGATGCCAAAAGAAGGGCGGAAGGCGTTAACAGAGG
AATGCTTCCAGCAAACGCCATTGAGATTCGTCGGTGATAAACAGTGGGTA
CAGTATGGGGAAGACGAATCAACTAGATATGAGTTCACCGCAGCCAGAAC
TGATAATGATGGANAAAGACCCATCAATGGTGAAATATAACCCGTGGCGT
TCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGCGGCTGGCGGAAA
TCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAATGAAAGGAGGAT
TCGCATACGGACCAAGGCACCACACCACCAGGATCCCAGTGGACCCGCAA
CCCAATCCCACCATGTAATGGCTTCGCTGGCGGTATAAATGAAGATCATC
CGTGTAAAAATGGGACCCAGTTCCCAGCCCCTGGACCCGGGCTCGAAGGA
TTCGGTGTTAAGTTTAAAAACATTTTATGGACATTTGAGTTTGTGATTAT
TGACATGTTGCACATTCCTGAGGACGTTGAACCAGGAGAATACGTGGTTT
CGTTCAGATGGGACGGTGAACAATTTCCACAAGTGTGGAATATGTGCTCC
TCTGTNCGTTCAGATGGGACGGTGAACAATTTCCACAAGTGTGGAATATG
TGCTCTTCTGTATGGCTGAATTGAAAGATTTGGACCTATCCTCACATCAC
AAAGCCTACGTCACTAACTGGACGCGCGGGGAGGCAGTAGAGGTTGCATG
GGGTATCCGAGCGAACCACGGAGGAGGCTATTCTTACAGGCTATGTAAGA
TGCCAAAAGAAGGGCGGAAGGCGTTAACAGAGGAATGCTTCCAGCAAACG
CCATTGAGATTCGTCGGTGATAAACAGTGGGTACAGTATGGGGAAGACGA
ATCAACTAGATATGAGTTCACCGCAGCCAGAACTGATAATGATGGANAAA
GACCCATCAATGGTGAAATATAACCCGTGGCGTTCTCCTGGCGCCGCACC
AATTAATTCACCCTGTGGGGCGGCTGGCGGAAATCCAGATGGATGTTTGG
GCGGACCATACTGTGGGCAAATGAAAGGAGGATTCGCATACGGACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040170XLOC_040170Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064076-proteinTCONS_00064076-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064076-exon-scaffold_407-1575043694:270004..270881TCONS_00064076-exon-scaffold_407-1575043694:270004..270881Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1575043694:269416..269687TCONS_00064076-exon-scaffold_407-1575043694:269416..269687Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1575043694:268793..269198TCONS_00064076-exon-scaffold_407-1575043694:268793..269198Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1510915933:270004..270881TCONS_00064076-exon-scaffold_407-1510915933:270004..270881Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1510915933:269416..269687TCONS_00064076-exon-scaffold_407-1510915933:269416..269687Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1510915933:268793..269198TCONS_00064076-exon-scaffold_407-1510915933:268793..269198Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1491911889:270004..270881TCONS_00064076-exon-scaffold_407-1491911889:270004..270881Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1491911889:269416..269687TCONS_00064076-exon-scaffold_407-1491911889:269416..269687Clytia hemisphaericaexon
TCONS_00064076-exon-scaffold_407-1491911889:268793..269198TCONS_00064076-exon-scaffold_407-1491911889:268793..269198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:268793..270881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0457986	1.7417	1.34396	3.184	2.61108	2.21656	1.73693	1.01976	1.10417	0.181017	0.289396	1.72464	5.48407	0	0.366998	0.9739	0.715367	0.0643775	0.0664022	6.09067	10.7814	8.97348	47.2408	8.45732	14.6411	74.4465	138.234
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004302Cellulose/chitin-bd_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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