|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064066 ID=TCONS_00064066|Name=TCONS_00064066|organism=Clytia hemisphaerica|type=transcript|length=5499bpRun BLAST on NCBI transcript from alignment at scaffold_407:213598..237389- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064066 ID=TCONS_00064066|Name=TCONS_00064066|organism=Clytia hemisphaerica|type=transcript|length=23792bp|location=Sequence derived from alignment at scaffold_407:213598..237389- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064066 vs. Swiss-Prot (Human)
Match: B3A2 (Anion exchange protein 2 OS=Homo sapiens GN=SLC4A2 PE=1 SV=4) HSP 1 Score: 573.163 bits (1476), Expect = 1.261e-176 Identity = 395/1048 (37.69%), Postives = 585/1048 (55.82%), Query Frame = 3
Query: 1608 TLESRIRSGMHALEEERKALREIVDEID--TFGEKDRDDITSHRF----GHLQHHSRAFDSANLRPHRHHRSGMLTHLSDMDTVSVCSFRPQKPHMQITMDDDVPRGHQETGPKAQGFVXXXXXXXXXNNGLQWKERARWIKFEEDVEKNE-RWGKPHVASLSFQSLLELRKGLETGTVLLNLDNYDLPTIFESIVENLVITDQIHSTMREKVKGILLSKHCHHHQNKPGLLRRKPSTVSLTS-------QGTRXXXXXXXXXXXXXXXXXXXEIEMEKVDDPLMSNCNGHTTVDIADDWSNHDGDEFNKKKSTVKFAPITEEPFGPSDPKTESDVK--ERIPEGAEATSVLVAAIEDLDRTAVAFVRLAKGCLLGNLTEVSIPVRFLFVIMGPPS-NHDYFEIGRSVATLMSDKIFHDLAYSAKNRDDILAAINSFLDDSIVLAPGDWDRHLLL---PLLQAEISEKRRERIKLLKQQAQWEDPD----------------EDNPLERTGKFFGGLKREIPKKIKFFKSDILDGFNVRCLVSIIFVFFATFAPTITFGALLEKKTKGNLGVIETLLATXXXXXXXXXXXXQPLMIVGTTGPILVFEEATFNLSYLFGIDFLKWRLWIGVWVMIICWAVVMFEGCFLVEHFTRFTEEVFSVLISLLFVYEAIYFLIKTFKENPL-----MDYDKLKGGVTLT---SNFTL---NSNITNITSPVDPTSSPCSYRDPNVALISTLLLLGTFYIAYYLRMLRVSHFLSSKARRVLSDFGVPFAMVFMVVLNIIAHDVSHVPKLKFKKGIQPTRDDRQNFYVSPFGLNG----YWIIAAFLPALCVSILLFMETELTXXXXXXXXXXXXXXXXYNMDLAVMGLICGLCSITGLPWMCAATVRAVQHQNALAVMSRSHAPGERPYLLRIHEQRLTNICIHILIGICVVAYPLIEEIPLAVCYGVFFYLGFTSLSGIQFIEQLKLIFVPSKYHPNRKYIRNVTYRSLLWYTMIQVFCLLLLIICKLSPAAPAFPFIIIGMVFLRRFI-ERYFT 4595
L+ R R G E+ R DEI+ T D D + SHRF G +H R + + R R T + RP+ PH + H+ FVEL EL +N QW+E ARWIKFEEDVE+ RWGKPHVASLSF+SLLELR+ L G VLL+LD LP + +VE +VI+DQI + R V LL KH H K R S SL S QG V +PLM T +++ + + P P G + K++ ++K E+IPE AEAT VLV +E L R +AFVRL + L + EV +PVRFLF+++GP S N DY EIGRS++TLMSDK FH+ AY A R+D+L AIN+FLD S+VL P + LL Q ++ +KR E+ +LL A E ED+PL RTG+ FGGL R++ ++ + SD D + +CL ++IF++FA +P ITFG LL +KT+ +GV E +++T+ G+ F L QPL+++G +GP+LVFEEA F+ +++L R+WIG W++ + +V EG FLV +RFT+E+F+ LISL+F+YE Y L+K F+E+PL + ++ GG +T + TL N ++ + P PN AL+S +L+ GTF+IA++LR + S F + RRV+ DFGVP A++ MV+++ D ++ KL G T +++ + ++P G + ++A+ LPA+ V IL+FMET++T ++++K++ L+KG G+++DL ++ + G+C++ GLPW+ AATVR+V H NAL VMS++ APG++P + + EQR+T + + +L+G+ +V L+ +IPLAV +G+F Y+G TSL+GIQF E+L L+ +P K+HP+ Y++ V + +T +Q+ CL LL + A+ AFPFI+I V LR + R FT
Sbjct: 234 NLQERRRIGSMTGAEQALLPRVPTDEIEAQTLATADLDLMKSHRFEDVPGVRRHLVRKNAKGSTQSGREGREPGPTPRA----------RPRAPH----------KPHEV-------FVELNELLLDKNQEPQWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESD---------------------PHVTEPLMGGVP-ETRLEVERE----------------RELPPPAPPAGITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQMLKKREEQGRLLPTGAGLEPKSAQDKALLQMVEAAGAAEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTQDLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGPLLVFEEAFFSFCSSNHLEYLVGRVWIGFWLVFLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCSASNSSEVDGGENMTWAGARPTLGPGNRSLAGQSGQGKPRG------QPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRIRRVIGDFGVPIAILIMVLVDYSIED-TYTQKLSVPSGFSVTAPEKRGWVINPLGEKSPFPVWMMVASLLPAILVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSIVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLCLALLWAVMSTAASLAFPFILILTVPLRMVVLTRIFT 1209 The following BLAST results are available for this feature:
BLAST of TCONS_00064066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.