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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064060 ID=TCONS_00064060|Name=TCONS_00064060|organism=Clytia hemisphaerica|type=transcript|length=978bp CATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCTCCT GGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAATCAA AGTCGCAcccaacttgaaaatcaaattacaaTTCCCAGATATGGATATCT TAAGTTCTGACAGCAGTGAGGTTGCATGTGGTACGAACCGTATCGCTGTT TCTCATTCGTCTGACCCACGAGATCCACCATTACTGTATTGTAACTCACA TCCTCCACCAATAGAAGCACAGGAGTATGGGAACGAATTAACAGTCACTT TCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCAAAT TATACAGCTTATGACCCAAACCCACCTCCACCGACcaccacaacaacaac caccacAACAACAACTGCTAACACAACCACAACAATCACACCTTCAAACA CAACGACTCCAGCAACCTCACAAGCACCTGTCACTCAAAAGCCTAAATCG AAACTTTCGAAAGGAGTCATTGCTGTCATTTGCATCCTGGTCATTCTGGT TGTACTTTTGATCATCGATATCATTTTGTACCAGAAAGATATGGGCGTTA TTTACTCCATCAGACGGGCGTGTGGTGGTTACGATTCTGTCTCCACTTAA ACGCCAATAGACAAACTTTCACGCTACAAATGAAATTTGCAATTTTgaat tactttcattttttaaagatgCATTGATTGACAAAATTCGTCTGTTCAGT TTcacttttttaacaatttttaccGACAAAAACAAACATTCTTATAATCT TGTAACGCTTTTTGTATTCCATTTTTGGTATtgattttttagcattttgt aaGCATTTTTCATATGATTTAATGTATTTATATCATCGTGACCGTTGTTG TATTTAAgacctttttgatttttttgatttaatgCACGAATAAAATTTGA AACGTAAACTTAAGTTATATCAACTTTC Run BLAST on NCBI protein sequence of TCONS_00064060-protein >TCONS_00064060-protein ID=TCONS_00064060-protein|Name=TCONS_00064060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
CDAKTLTNGTGTFTSPGYPQNYPFGDTCQWKIKVAPNLKIKLQFPDMDIL SSDSSEVACGTNRIAVSHSSDPRDPPLLYCNSHPPPIEAQEYGNELTVTF TSTKTEAKQSKGFSANYTAYDPNPPPPTTTTTTTTTTTANTTTTITPSNT TTPATSQAPVTQKPKSKLSKGVIAVICILVILVVLLIIDIILYQKDMGVI YSIRRACGGYDSVST Run BLAST on NCBI transcript from alignment at scaffold_407:148070..149319- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064060 ID=TCONS_00064060|Name=TCONS_00064060|organism=Clytia hemisphaerica|type=transcript|length=1250bp|location=Sequence derived from alignment at scaffold_407:148070..149319- (Clytia hemisphaerica) CATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCTCCT
GGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAATCAA
AGTCGCACCCAACTTGAAAATCAAATTACAATTCCCAGATATGGATATCT
TAAGTTCTGACAGCAGTGAGGTTGCATGTGGTACGAACCGTATCGCTGTT
TCTCATTCGTCTGACCCACGAGATCCACCATTACTGTATTGTAACTCACA
TCCTCCACCAATAGAAGCACAGGAGTATGGGAACGAATTAACAGTCACTT
TCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCAAAT
TATACAGCTTATGACCCAAACCCACCTCCACCGACCACCACAACAACAAC
CACCACAACAACAACTGCTAACACAACCACAACAATCACACCTTCAAACA
CAACGACTCCAGCAACCTCACAAGGTTTGTAATTCGATCGTCAAATGAAT
AAAACTTTATTTCATCCGATATCGTTCATTAGTTTTCGGCAAAGTTATTA
CTAAGGTTCTTTCCATTCAATAAGATATAATCGTCAACCATGCTTAAAAA
AAGTTTTTAATCGATATTGATTTCAATGACTTTATGGGGTTCTTACTTTT
AATGGCCTGATTTCTTTTCTCAAAAACTTGTTACAAACTTTGAATATTTA
TGGATAAAATGTTTAAATGCAGACACATTTAACCTCATCTTTTCAGCACC
TGTCACTCAAAAGCCTAAATCGAAACTTTCGAAAGGAGTCATTGCTGTCA
TTTGCATCCTGGTCATTCTGGTTGTACTTTTGATCATCGATATCATTTTG
TACCAGAAAGATATGGGCGTTATTTACTCCATCAGACGGGCGTGTGGTGG
TTACGATTCTGTCTCCACTTAAACGCCAATAGACAAACTTTCACGCTACA
AATGAAATTTGCAATTTTGAATTACTTTCATTTTTTAAAGATGCATTGAT
TGACAAAATTCGTCTGTTCAGTTTCACTTTTTTAACAATTTTTACCGACA
AAAACAAACATTCTTATAATCTTGTAACGCTTTTTGTATTCCATTTTTGG
TATTGATTTTTTAGCATTTTGTAAGCATTTTTCATATGATTTAATGTATT
TATATCATCGTGACCGTTGTTGTATTTAAGACCTTTTTGATTTTTTTGAT
TTAATGCACGAATAAAATTTGAAACGTAAACTTAAGTTATATCAACTTTC
Coding sequence (CDS) from alignment at scaffold_407:148070..149319- >TCONS_00064060 ID=TCONS_00064060|Name=TCONS_00064060|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_407:148070..149319- (Clytia hemisphaerica) CACCTGTCACTCAAAAGCCTAAATCGAAACTTTCGAAAGGAGTCATTGCT GTCATTTGCATCCTGGTCATTCTGGTTGTACTTTTGATCATCGATATCAT TTTGTACCAGAAAGATATGGGCGTTATTTACTCCATCAGACGGGCGTGTG GTGGTTACGATTCTGTCTCCACTTAATGCGACGCAAAAACGTTGACAAAC GGGACAGGAACTTTTACATCTCCTGGATATCCACAAAACTACCCATTCGG TGACACGTGTCAATGGAAAATCAAAGTCGCACCCAACTTGAAAATCAAAT TACAATTCCCAGATATGGATATCTTAAGTTCTGACAGCAGTGAGGTTGCA TGTGGTACGAACCGTATCGCTGTTTCTCATTCGTCTGACCCACGAGATCC ACCATTACTGTATTGTAACTCACATCCTCCACCAATAGAAGCACAGGAGT ATGGGAACGAATTAACAGTCACTTTCACTTCTACAAAGACTGAAGCAAAA CAAAGCAAAGGTTTCAGTGCAAATTATACAGCTTATGACCCAAACCCACC TCCACCGACCACCACAACAACAACCACCACAACAACAACTGCTAACACAA CCACAACAATCACACCTTCAAACACAACGACTCCAGCAACCTCACAAGCA CCTGTCACTCAAAAGCCTAAATCGAAACTTTCGAAAGGAGTCATTGCTGT CATTTGCATCCTGGTCATTCTGGTTGTACTTTTGATCATCGATATCATTT TGTACCAGAAAGATATGGGCGTTATTTACTCCATCAGACGGGCGTGTGGT GGTTACGATTCTGTCTCCACTTAATGCGACGCAAAAACGTTGACAAACGG GACAGGAACTTTTACATCTCCTGGATATCCACAAAACTACCCATTCGGTG ACACGTGTCAATGGAAAATCAAAGTCGCACCCAACTTGAAAATCAAATTA CAATTCCCAGATATGGATATCTTAAGTTCTGACAGCAGTGAGGTTGCATG TGGTACGAACCGTATCGCTGTTTCTCATTCGTCTGACCCACGAGATCCAC CATTACTGTATTGTAACTCACATCCTCCACCAATAGAAGCACAGGAGTAT GGGAACGAATTAACAGTCACTTTCACTTCTACAAAGACTGAAGCAAAACA AAGCAAAGGTTTCAGTGCAAATTATACAGCTTATGACCCAAACCCACCTC CACCGACCACCACAACAACAACCACCACAACAACAACTGCTAACACAACC ACAACAATCACACCTTCAAACACAACGACTCCAGCAACCTCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064060-exon-scaffold_407-1575043694:148846..149319 | TCONS_00064060-exon-scaffold_407-1575043694:148846..149319 | Clytia hemisphaerica | exon |
TCONS_00064060-exon-scaffold_407-1575043694:148070..148573 | TCONS_00064060-exon-scaffold_407-1575043694:148070..148573 | Clytia hemisphaerica | exon |
TCONS_00064060-exon-scaffold_407-1510915933:148846..149319 | TCONS_00064060-exon-scaffold_407-1510915933:148846..149319 | Clytia hemisphaerica | exon |
TCONS_00064060-exon-scaffold_407-1510915933:148070..148573 | TCONS_00064060-exon-scaffold_407-1510915933:148070..148573 | Clytia hemisphaerica | exon |
TCONS_00064060-exon-scaffold_407-1491911889:148846..149319 | TCONS_00064060-exon-scaffold_407-1491911889:148846..149319 | Clytia hemisphaerica | exon |
TCONS_00064060-exon-scaffold_407-1491911889:148070..148573 | TCONS_00064060-exon-scaffold_407-1491911889:148070..148573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_407 | supercontig | scaffold_407:148070..149319 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
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