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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064059 ID=TCONS_00064059|Name=TCONS_00064059|organism=Clytia hemisphaerica|type=transcript|length=545bp
cTTTATACAATGAATAAAAACCTGAGAGTGAAGTAGAGAGCACGTTTTCG
AAGATTTTGAAGGACTGCACTTCGTTTACTCCTTGAGCACCATGTTATCC
TTTCTACTTGGTTCATCAATACTATCCCTATGTCTTTTAGGGATAGAAGG
AGCATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCTC
CTGGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAATC
AAAGTCGCAcccaacttgaaaatcaaattacaaTTCCCAGATATGGCTAT
CTTAAGTTCTGACAGCAGTGAAAGTGCATGTGGTACGAACCGTATCGCTG
TTGCTCATTCGTCTAACCCACGAGATCCACCATTACTGTATTGTAACTCA
CATCCTCCACCAATCGAAGCACAGGAGTATGGGAACGAATTAACAGTCAC
TTTCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCAA
ATTATACAGCTTATGACCCAAACCCACCTCCACCGACCACCACNN Run BLAST on NCBI protein sequence of TCONS_00064059-protein >TCONS_00064059-protein ID=TCONS_00064059-protein|Name=TCONS_00064059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MLSFLLGSSILSLCLLGIEGACDAKTLTNGTGTFTSPGYPQNYPFGDTCQ
WKIKVAPNLKIKLQFPDMAILSSDSSESACGTNRIAVAHSSNPRDPPLLY
CNSHPPPIEAQEYGNELTVTFTSTKTEAKQSKGFSANYTAYDPNPPPPTT
X Run BLAST on NCBI transcript from alignment at scaffold_407:138105..142950- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064059 ID=TCONS_00064059|Name=TCONS_00064059|organism=Clytia hemisphaerica|type=transcript|length=4846bp|location=Sequence derived from alignment at scaffold_407:138105..142950- (Clytia hemisphaerica)
CTTTATACAATGAATAAAAACCTGAGAGTGAAGTAGAGAGCACGTTTTCG
AAGATTTTGAAGGACTGCACTTCGTTTACTCCTTGAGCACCATGTTATCC
TTTCTACTTGGTTCATCAATACTATCCCTATGTCTTTTAGGGATAGAAGG
AGGTGAGAGTCATTTTTGCTTTTCTGTTTTTTTTGTACATTAACAGATAA
TAAAAGTTTTTTTTACATTCAAACGGTCCCTCCCAGTTACATGAGTGGAA
GCGGGTTGTAAACTTTTTTGGGAAAATCTATCCTCCGATTAACCTCTCAG
TCATCAGTCAAGCAAAGAAAAAAAAAATCTTCAAAGATTAAATTTTCGGG
ATTTTGACCCTAATTAAAATTACTTTTGCGAGGGATATTATTATGGCTTT
TGAGAAAATTAACTCAATCTTTGAATCTATATTTAAGAGTTCATTAAAAT
ACAGCTGGAGAAGTCGAAAGTCATTACCCCCAAATATACTGAATCAAATC
TAAAAATAAGAAGTTTGAAAGTGGCTGATTTAGTACCACCTTTTTTAAAG
CAGAGAAACGTTAAAATTACTGATTCCAGCTACTAAAACGCCTTGTATAT
GCAGGCAGTGCTTTACAATTTAGTTACGTATTTGGATACGATATAACCCC
CTCTCCTAATGAATGTTTTAAAATCCTAGGACTAGGAGACTAGCTTGAAC
AGAAGCAGCCACTGTCAAAATATTCACTAAAGTCTATTCACGATAAGTGT
GCACTCTTTTTTCATTTACCTATAACTTTTGAAGGAATTCTTTAATCCTT
ATAAATTTGGTATCATTGGAAAGATATTACTGAGTGGAACAATTTAAAAT
AAAAAAGTCTTTGAAAAAATTCTAAAAACGAAGATGAAAATGAGGAAAAA
AAAAATGAAGATCTTGTAGAGAAGTGCTATAACTTTCATTTTCACTGGAG
TGAATCCTTGATTATTGAACGTCATCACTGTGAAAAAAATTCTCAAAAAT
AATCATTCAGTCAAAAGCTATCAAACAAAGTTATAAGCTGATTGACGTCT
AAAAACGCTGTTTTCTGCTGTTTTCTGCTGTTTTTTGGGGTCAATCACTT
ATTAACTTTGCCTCATAACTTTATATTGACATGTTGCAGAAGTAGACGGT
GGAGAAATTTTTAGAAATATGTGTTCGTATCTTCTAGGAGACCAAATGTT
ATGACCTTTCATTTTTTTATACAAATGTTGTGTTCTGATTTCTAGGAAAC
CTTTATCGCACTATTTGTCTCCCTAAACTTGCCACTACATTATGGTTTGA
TTTGTTCTAAATCTAGGAAAAACAATTTGCCAAGATAGATAAACTTGTAA
GATATTTGTTTCTCTCCACGAGAGATGTGTTCTGAAAATGTCTAGGGTCA
CTAGGCAACAGCATTACATCAATTCGCTCTTGAGAATACCCCTGTCTCCT
TGAAAGATGTGTTCTGAAGCTTTCTAGGGTTGCCTAGAAAACGAGAACAC
GTTAGATGACTTTCGATGTTGGGAAGATTTTTCGATCTTTAGAACAGATC
CCCAAATTTCACAAATGACAATATAAATCGTCTTTTTCCAGCCAGGCACA
CAGATAGAACTAACAGAACAGATTCAATTTTCTGAAGTAAAAGTAGCACA
GATAACAAAATTAGATTTTCTGTAGAATAGCTGTCCAAGGTAGATTGTAC
CATAAGTTGGTCTAATAGATCTTTTTGCCTTTCCATCTACCATCTTGGAT
TATATGCAAAAACAATGCAGGAACGAAAAAGCTGTGGTTGGATTTAGTTG
GAAATTATGCAAAAAGGTATGAAAGTTTAAACTAATTTTTTAAAACCAAC
AAAGCATCTTATAAAGAAGTATTACTGTATACTCATTAGAACAATAAAAG
ATGAAATTTTGTAACTCAAAAACAAATACTTACAAAAGACAACAAAGCTT
TTTTATGAATTTGTTTTTAAAGACACAGCGGGCGTGTTCACACTGAAAAG
TTTACTTAATTAAATCTATCAAAGTTAAACAAAGAGATTTATGATGGATG
AATACACTGGTTTATTACAGTTCTTTGTAGGTTCACGAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCACAGTAATTGATTTTGCTTAAGGCTTCTC
ATTGGTTGATTTTTTATTGAGAGTTTCGATTTCACCTGTGATTGGTTGAT
ATTGGTATCCATACATCACTTAAAACCCGCAAACATATTTGTTCTAATGG
TTTTACTCATTAACTGCATTCATCTTACACATCAACAACACCGTTTGCAC
TATTTCTAATTTTTTCCTCAGTTCATTCGTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTTACGACTCTTAATTAAGGAAGATCGATTAAAAATTA
CAATACTACGCGTTCGACTCTTTGTTAAATGCACGTTCTGTATTGTAGTC
AACAAAAGATTCTCCTAACTACATTTTTATTAAGGAAGGTCTGTAGTGTG
AACACGACCAGCATTTTTTCTTTTGAGGCCATCAGACTATCAAAACACGC
AAATTGAAAACAGTAATTATGACGTCATTCTTGCAAGAAAATATAATACC
CCCGTTTTGATATACAAGGTCAAAGCGCAATATTTAGAAAAAATTAAGTA
TTTTGCAACTGTAAATCAGGGGGTCCAGATCAATGTTTTGGTTTGAGTAT
ATGACGTCGTTATGCCATTCCTAAGAGAATAATTTACCGTCAGCCAAATG
AAAATTACTCTGCACCTCTGCTGTTGATTTCCAGCTTGAGTTTATGCCTA
ATGTTATGGTTTTTAAAGGGCTTTTTCTAAGAGACGAGAGCATTATTTTT
GGTTTCAAGAGAGACAAATTTAGTTTTTCTCCTACAAGATTTCACTTTAA
TGTAATTCGATATGGCGGATGGAGAGGTGAAAAGGTCTACGTCAACACAC
CTCGTCTAATTTCGGCATTAGGAAAAACAGGAAGGTCCAAATCACTGACT
GAAAAATATTGCTAAAAGCAAGGAATTGTAGCTACAATTAACAATTTCAA
CCCTCCTATTATTCACAGCTCTAAATAAGAGTGTAGGAAATAGATCATAC
TCTACCCTACCCCTGCGTCACAGACCTGTTGAGACCCCAGCCCACTGGAA
AATTAAGCAAAAATTTCGTCCCCGGTGGGGAAATACCCTTGAATTTCAGC
CCCACTGGGAAATTGACTTTGATTTTATTCCCATTCAAAATTCCAAGCTT
CAAAATTTCCATCTCCACTGGGTNCGTTGAGACCCTAGACCACTGGAAAA
TTAAGCAAAAATTTCGTCCTCGGTGGGGAAATACCCTTGAATTTCAGCCC
CACTGGGAAATTGACTTTGATTTTATTCCCATTCAAAATTCCAAGCTTCA
AAATTTCCATCTCCACTGGGTTTTTAACCTTGAAAAAATAAAATTTCTAT
CCCCATTGCGATCACAAAAAGAATTTTTATCCCCACTGAAGAAAAAAGTT
CCACCGGGGCTGTGAGACGGGGGTGTTCTACCTAATAAATGTCCCCCTGC
TAATTAATTTTTCGGAAGATACTTTTGAATGTCCCTCTTTTACCCTAATT
CTGCTGTACAGCCTCCTTTTCAAAAGTTAACATAATTTCCCTACTTTGTA
TGCATGTAAGTTTCCTCAAAACACATCTTCTTTTATTTTTTCTGATATTG
CCTTGATGATAACCTGGAGTTGCCACCTGGAAATATTTTTTATCCTATAA
CAGATAATAAAATTTAGTTTCCTGGAAAATATCTGTTCTACCCTGCCAGC
TAAAAGTATTTTCAAAACAAATACAGATACCTGATTTCAAACCAAAAGCA
ACTAAGGTTTAGAACAGATTGCCACAAAGATTTATTGTAAGAACATATGA
CGTTTTTCCGGCTTAACAAAATTTAATGAGGAAATTTTTTCAGAAAAGAT
CAACATCAAATTTCTATTAGAACAGATCTAGATTTTAAATTTCCGGGTTG
GAGGTTTTCTCCTTATAATAGATATTTTTAACTCAACAATTCGAGATTTT
ATCTCTTTTTAGTAAGGTAAGCATTCTTAACTTTGTGTCTATGAAATTAT
TAAACTTTTAACATTGTTAGTTCAATGAAATCTATCTAATATTTTTCACA
CAGCATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCT
CCTGGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAAT
CAAAGTCGCACCCAACTTGAAAATCAAATTACAATTCCCAGATATGGCTA
TCTTAAGTTCTGACAGCAGTGAAAGTGCATGTGGTACGAACCGTATCGCT
GTTGCTCATTCGTCTAACCCACGAGATCCACCATTACTGTATTGTAACTC
ACATCCTCCACCAATCGAAGCACAGGAGTATGGGAACGAATTAACAGTCA
CTTTCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCA
AATTATACAGCTTATGACCCAAACCCACCTCCACCGACCACCACNN Coding sequence (CDS) from alignment at scaffold_407:138105..142950- >TCONS_00064059 ID=TCONS_00064059|Name=TCONS_00064059|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_407:138105..142950- (Clytia hemisphaerica)
CATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCTCCT
GGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAATCAA
AGTCGCACCCAACTTGAAAATCAAATTACAATTCCCAGATATGGCTATCT
TAAGTTCTGACAGCAGTGAAAGTGCATGTGGTACGAACCGTATCGCTGTT
GCTCATTCGTCTAACCCACGAGATCCACCATTACTGTATTGTAACTCACA
TCCTCCACCAATCGAAGCACAGGAGTATGGGAACGAATTAACAGTCACTT
TCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCAAAT
TATACAGCTTATGACCCAAACCCACCTCCACCGACCACCACNATGTTATC
CTTTCTACTTGGTTCATCAATACTATCCCTATGTCTTTTAGGGATAGAAG
GAGCATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCT
CCTGGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAAT
CAAAGTCGCACCCAACTTGAAAATCAAATTACAATTCCCAGATATGGCTA
TCTTAAGTTCTGACAGCAGTGAAAGTGCATGTGGTACGAACCGTATCGCT
GTTGCTCATTCGTCTAACCCACGAGATCCACCATTACTGTATTGTAACTC
ACATCCTCCACCAATCGAAGCACAGGAGTATGGGAACGAATTAACAGTCA
CTTTCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCA
AATTATACAGCTTATGACCCAAACCCACCTCCACCGACCACCACNATGTT
ATCCTTTCTACTTGGTTCATCAATACTATCCCTATGTCTTTTAGGGATAG
AAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064059-exon-scaffold_407-1575043694:142799..142950 | TCONS_00064059-exon-scaffold_407-1575043694:142799..142950 | Clytia hemisphaerica | exon |
| TCONS_00064059-exon-scaffold_407-1575043694:138105..138497 | TCONS_00064059-exon-scaffold_407-1575043694:138105..138497 | Clytia hemisphaerica | exon |
| TCONS_00064059-exon-scaffold_407-1510915933:142799..142950 | TCONS_00064059-exon-scaffold_407-1510915933:142799..142950 | Clytia hemisphaerica | exon |
| TCONS_00064059-exon-scaffold_407-1510915933:138105..138497 | TCONS_00064059-exon-scaffold_407-1510915933:138105..138497 | Clytia hemisphaerica | exon |
| TCONS_00064059-exon-scaffold_407-1491911889:142799..142950 | TCONS_00064059-exon-scaffold_407-1491911889:142799..142950 | Clytia hemisphaerica | exon |
| TCONS_00064059-exon-scaffold_407-1491911889:138105..138497 | TCONS_00064059-exon-scaffold_407-1491911889:138105..138497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:138105..142950 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
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