TCONS_00064056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064056
Unique NameTCONS_00064056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064056 ID=TCONS_00064056|Name=TCONS_00064056|organism=Clytia hemisphaerica|type=transcript|length=3780bp
GAATTTTTATCTAGCAGATTCTTCCTGCTGTtatcaaattcaaaacaaac
aaaatttctcTTTAATTTTTTGAACTCCATCAAATTCTCTTATGAGGTAT
TTTGAGTGGAAAGAGGAAGAGATATAATAAGTTTTATCTTACAAAATCCT
CTGAAGAGATAGATGTTAACATAACATTTATTTATTCGGAACATTCGTCA
GCACAAGGAGGTGGCGGTTCAGGGTTTGCTGGGAGCAGGCTGGACCCTTT
TTCGTCATGATCGGCAAGATTCGACAAAATTAGCTAGATTTGCAGAGTTT
ATGGGTCCATTGTTGGAAAACTGGCGAGATCACTAAGTCCAAAAACCTGA
AGTATGGTTGCGGCTCTTGCTTATCATATTTTTAGCCCCAACCCCTACAA
AATTTTGGTGCGGACTCGAAAAAGATAACATGCAGTTTCTTCCTCGCCGT
GAATAAATGTTCTTTTAGTTATTGGCGGATATTAGGTATTTaagttcttt
ttattttctactaGCCATGTACGACAAGACATTATCGAACACCTTCATCA
TATTGTTAGCGTTGACGTGCTACACTTCAGTTCTGGTGGTTTTAGCTCTG
GTGTACCCAACCACTCAAATCATCAACATACAACTCAAAGGCTTTGAATA
TCAGAATCACCAGAGACGAGATGTCGAAGATTtggaaaatgaaattcaaa
gTGTTTTTTCACCGGAGAAATGCAAAGAGGATGAAAAGATGCGTTTGATC
ACCTCAGGTTATGACAAAAGAACAGAagagattacgtcatatattGACTG
TCATTGCTCGAAAAGGAATAAGTGTGTACCTAACACACTAGGCAGAATCT
CAGTCAACATGAATGTAACAAGAATGGATGAAGTCTTCAAGGAGAGTTTC
ACAAAAATCCTCAATCCTGGTGGTTGGTATGCTCCAAAACAATGCAAAAC
GAGCTCAGtaagccaaattgaaatatctaatTTGTAAAGACTCTTTTAAC
AGTCAAGAACACCTTTAAGGTGGATTCCCCCTGACTCAACAGGgtatttc
agagaaaaaataaaaaaaaccttttttttgaacCAGACCCTCAGGACACA
TCTATCTTACGCAGAATTTATCGTAGAATCAGAATATCACATCCATTTGG
TCTCAAATTTAATTGCTTTTtcggaaattgatttttcagaGGCATGgtat
ataaaatttttgaaaaaaaaatcaacgttTTTTGTCATTTGCCCCTGGGA
AGGCAAAGCGCAATTGCCGACCGTTTCCGTACGCCCAAGCGCCCATTTCG
CGCCCCTAAAGCCTCCTTTTCGTGCAGATCCAATTTCGTGACTTTTCACA
CGggattgttttcaaaaatcgctCTTAGAAAGCTCAACAGTCAGACCAAG
CTGTATAATATTAGTGACTGAAGAAATCTCAAGAAATCTGACTGGTTAGT
ACTAAAACATGGGGAAACCAAGCTCTACTAAACGTGAAAGAGCTTCTGGT
AATGCAGGTCGTTGCACAAAAGCAAGATCAAAGGCTCTTTATGCTCCAAA
GAAGAAAACTTACAACTTCGAGAAGAAGCGACCGACTGCGACTACGGCTT
CAAAATCGTCAATCGACAACACTTCAAACAAGGAAAGTGAACTTCCAGAG
ACTGCATCTAGCTCTAAAATTGGAAGTACAACTATACCTGAGACTCCTGA
AAAATCAAGACCAACTGAAAATAACAGCAGTACTACAAACCCTGGTCCAA
AAATGATTCACGGCTACCGTTTTGTGGATATGACGATATTAGCGTCAATC
TTCACCGTCCTTAGTTGCCCTGGATGTAATGGTGTACGTTGTCTAAACCT
CCATGAAAAtgatgttaaaaagaaaggactAGCAAGCCATCTTGTTCTTC
AATGCTCTGTGTGTCTTTATGAGCAATCATTTTTCACTTCGAAGCAAGTG
CAATACCCGAATGAAGGACGCGGTGGTGCTAAATTCTTCGATGTGAATGC
TCGGTCAATTTATGCTTCACGACAAATAGGTGGAGGCcatgaacatttga
aaaagttttgcaCTTACATGAATATGCCTCCACCAGCTCTTGAAGGAAGC
TATAGCAAAATGACAAAGAAATTGAAGGAAGCGGCAAAAACTGTTGCTGA
AAAAAGCATGTCTGATGCTGCCGCTGAACTGCGCGGGGAAGCAGAATCAG
CTGACGTTGGCGTTTCTATTGACGGGACATGGCAGAGAAAGGGATATACT
TCCATGAATGGTGTTGTGACTGCTATATCAGTGGATAATGGAAAGGTTCT
TGACACAGCTATCATGTCAAAGAATTGTAAAGGCTGTACCAAAATGAAGT
CTGTTAAAACCACTGATCCGCAACGATATGACGCGTGGAAAGCTTCTCAC
AAATGTGGGCTCAATTTCAAAGGATCTTCCCCAGCAATGGAAAAAGAGGG
AGCAATAAACATTTACAATAACTCTACTAAGAAACATGGGCTATATTACA
CTTCATTTTTTGGTGACGGTGATTCAAAATCGTTTACGGCGGTACAAAAT
ACCTATGGTCCGCGCAAGCCTGTAAAGAAACATGAATGTATTGGCCACTA
TCAAAAAAGAGTCGGAACTCGTCTTCGGAAATTGAAGAAGTTAAACAAAC
GCCTAGGAGGTGCAGGAAGATTGACTGATGCCAAGATAGATTGTCTCCAA
AATTATTTTGGCATCGCACTGCGTCAGAATGTGAATAATCTTGACGAAAT
GGTGAAATCAACCAAAGCGTCAATGTTTCATGTTGCGGGATACCATGACA
ACTGCCCCAATCATAAAGATAGCTGGTGTCAATACAATCTTGACAAATTA
AATGGCAccaatttctacaaaaagaaagGCTTCCCTTTAGATGTACGTCA
AGCAATTTTGCCAACCTACAATGATTTATGCACACGCGAAAAACTCGAAA
AATGCTTACACGGTCGTACTCAAAACGCAAACGAGAGTTTTAACGGTATG
ATTTGGAACCGCATCCCAAAAGCCAACCATGTGGGTTTACACATCCTCAG
CTTTGCTGTCTATGATGCTATTTCTCATTTCAACAATGGTGGTATAGCAG
CCTACAACATCTTAACTAAAATGAACATGGAAGCAGGAAAGTACACGGTC
AAAGGTCTAAACCTTCAGGATTTGATCCGTAAACGACGGTCAGCTTACCG
AATGTCTTCTCCCCAAACAAAGAGAAGAAAAGTTATCAGACACctgagaa
aaacaaaacaagacaaattaattgaaaaagaAGGGAAAACTTATGAATAT
GGTGGCTTTGAATGTTGATTTAATGTAGATTTGTAGAGACTTTATGTTTT
TAGATTCAAAATATCAGTTATAATTTTTAGCgcgttttcttatttttgca
aGTTTTTTCAACACGGGTCGGGGCATAATTTCTGAACCGCTTTCTCAATC
AAGCTCATTTTTTCAGTGAATGTTTATTGGAAATAAAAGGATGTTTTGGT
TGTagagtttttttgaatttcaccaTAAAAAGTGTTTTATGTTTGAAgca
acttttgtatttttttgtattttttgccgGTCCGAAGAGTTAAGCGGTCT
GTTCTATGaggttcaaatttcaaaattttaattcaccCAAAACATGCATC
TATATAAGGGTGATCAACTCAGAAAGTTTCATTGGTATATCTTTTTAACT
TCTCCGGAAATTGACCGACCCGTGTTTGACCTATTTTGGCACTTTTCGGT
GCACGGCTCcggccgccattatggattttt
Run BLAST on NCBI

transcript from alignment at scaffold_407:97813..102271-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064056 ID=TCONS_00064056|Name=TCONS_00064056|organism=Clytia hemisphaerica|type=transcript|length=4459bp|location=Sequence derived from alignment at scaffold_407:97813..102271- (Clytia hemisphaerica)
GAATTTTTATCTAGCAGATTCTTCCTGCTGTTATCAAATTCAAAACAAAC
AAAATTTCTCTTTAATTTTTTGAACTCCATCAAATTCTCTTATGAGGTAT
TTTGAGTGGAAAGAGGAAGAGATATAATAAGTTTTATCTTACAAAATCCT
CTGAAGAGATAGATGTTAACATAACATTTATTTATTCGGAACATTCGTCA
GCACAAGGAGGTGGCGGTTCAGGGTTTGCTGGGAGCAGGCTGGACCCTTT
TTCGTCATGATCGGCAAGATTCGACAAAATTAGCTAGATTTGCAGAGTTT
ATGGGTCCATTGTTGGAAAACTGGCGAGATCACTAAGTCCAAAAACCTGA
AGTATGGTTGCGGCTCTTGCTTATCATATTTTTAGCCCCAACCCCTACAA
AATTTTGGTGCGGACTCGAAAAAGATAACATGCAGTTTCTTCCTCGCCGT
GAATAAATGTTCTTTTAGTTATTGGCGGATATTAGGTATTTAAGTTCTTT
TTATTTTCTACTAGCCATGTACGACAAGACATTATCGAACACCTTCATCA
TATTGTTAGCGTTGACGTGCTACACTTCAGTTCTGGTGGTTTTAGCTCTG
GTGTACCCAACCACTCAAATCATCAACATACAACTCAAAGGCTTTGAATA
TCAGAATCACCAGAGACGAGATGTCGAAGATTTGGAAAATGAAATTCAAA
GTGTTTTTTCACCGGAGAAATGCAAAGAGGATGAAAAGATGCGTTTGATC
ACCTCAGGTTATGACAAAAGAACAGAAGAGATTACGTCATATATTGACTG
TCATTGCTCGAAAAGGAATAAGTGTGTACCTAACACACGTAAGTAATGAA
AGGTTCTCGGATTCTTAAATTGCCCAACTTTCCCAACATCTTTAAAAAGC
TTGATTTAAATACAAAAATTTATAATCTAGTTGCTTTACTTTAAAGTGAT
CTTGTTAGACGCTATAATTATTTTAGAAAACTCTCCAAAATCTTCCAATA
ATAGTGAGAGGTTTAAAATTGATCGAAATTTGCGCATATATTCTTCCTCG
GGGGGGGGGGGGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGATTACGGTATTTCATTTTCTACCGGT
ATCGGTATTTAGGTAATTAGGCTTCTTTTATCGACGGTATTACGGTATTT
GACCCAAATTTTTGTCGGTATGACAGTATTTAAGACCCCTGAAGCCCCCC
TTCCTCTAAGTCGGAGCCATGCGACACCTTCCACTGACCCTGTGTAAAGT
CGACTCAAAATGAGCACTGTGAAAATGAGAGGTCAGACTCATTCTAGTAT
TTTTCTTTCACTTTCAGTAGGCAGAATCTCAGTCAACATGAATGTAACAA
GAATGGATGAAGTCTTCAAGGAGAGTTTCACAAAAATCCTCAATCCTGGT
GGTTGGTATGCTCCAAAACAATGCAAAACGAGCTCAGTAAGCCAAATTGA
AATATCTAATTTGTAAAGACTCTTTTAACAGTCAAGAACACCTTTAAGGT
GGATTCCCCCTGACTCAACAGGGTATTTCAGAGAAAAAATAAAAAAAACC
TTTTTTTTGAACCAGACCCTCAGGACACATCTATCTTACGCAGAATTTAT
CGTAGAATCAGAATATCACATCCATTTGGTCTCAAATTTAATTGCTTTTT
CGGAAATTGATTTTTCAGAGGCATGGTATATAAAATTTTTGAAAAAAAAA
TCAACGTTTTTTGTCATTTGCCCCTGGGAAGGCAAAGCGCAATTGCCGAC
CGTTTCCGTACGCCCAAGCGCCCATTTCGCGCCCCTAAAGCCTCCTTTTC
GTGCAGATCCAATTTCGTGACTTTTCACACGGGATTGTTTTCAAAAATCG
CTCTTAGAAAGCTCAACAGTCAGACCAAGCTGTATAATATTAGTGACTGA
AGAAATCTCAAGAAATCTGACTGGTTAGTACTAAAACATGGGGAAACCAA
GCTCTACTAAACGTGAAAGAGCTTCTGGTAATGCAGGTCGTTGCACAAAA
GCAAGATCAAAGGCTCTTTATGCTCCAAAGAAGAAAACTTACAACTTCGA
GAAGAAGCGACCGACTGCGACTACGGCTTCAAAATCGTCAATCGACAACA
CTTCAAACAAGGAAAGTGAACTTCCAGAGACTGCATCTAGCTCTAAAATT
GGAAGTACAACTATACCTGAGACTCCTGAAAAATCAAGACCAACTGAAAA
TAACAGCAGTACTACAAACCCTGGTCCAAAAATGATTCACGGCTACCGTT
TTGTGGATATGACGATATTAGCGTCAATCTTCACCGTCCTTAGTTGCCCT
GGATGTAATGGTGTACGTTGTCTAAACCTCCATGAAAATGATGTTAAAAA
GAAAGGACTAGCAAGCCATCTTGTTCTTCAATGCTCTGTGTGTCTTTATG
AGCAATCATTTTTCACTTCGAAGCAAGTGCAATACCCGAATGAAGGACGC
GGTGGTGCTAAATTCTTCGATGTGAATGCTCGGTCAATTTATGCTTCACG
ACAAATAGGTGGAGGCCATGAACATTTGAAAAAGTTTTGCACTTACATGA
ATATGCCTCCACCAGCTCTTGAAGGAAGCTATAGCAAAATGACAAAGAAA
TTGAAGGAAGCGGCAAAAACTGTTGCTGAAAAAAGCATGTCTGATGCTGC
CGCTGAACTGCGCGGGGAAGCAGAATCAGCTGACGTTGGCGTTTCTATTG
ACGGGACATGGCAGAGAAAGGGATATACTTCCATGAATGGTGTTGTGACT
GCTATATCAGTGGATAATGGAAAGGTTCTTGACACAGCTATCATGTCAAA
GAATTGTAAAGGCTGTACCAAAATGAAGTCTGTTAAAACCACTGATCCGC
AACGATATGACGCGTGGAAAGCTTCTCACAAATGTGGGCTCAATTTCAAA
GGATCTTCCCCAGCAATGGAAAAAGAGGGAGCAATAAACATTTACAATAA
CTCTACTAAGAAACATGGGCTATATTACACTTCATTTTTTGGTGACGGTG
ATTCAAAATCGTTTACGGCGGTACAAAATACCTATGGTCCGCGCAAGCCT
GTAAAGAAACATGAATGTATTGGCCACTATCAAAAAAGAGTCGGAACTCG
TCTTCGGAAATTGAAGAAGTTAAACAAACGCCTAGGAGGTGCAGGAAGAT
TGACTGATGCCAAGATAGATTGTCTCCAAAATTATTTTGGCATCGCACTG
CGTCAGAATGTGAATAATCTTGACGAAATGGTGAAATCAACCAAAGCGTC
AATGTTTCATGTTGCGGGATACCATGACAACTGCCCCAATCATAAAGATA
GCTGGTGTCAATACAATCTTGACAAATTAAATGGCACCAATTTCTACAAA
AAGAAAGGCTTCCCTTTAGATGTACGTCAAGCAATTTTGCCAACCTACAA
TGATTTATGCACACGCGAAAAACTCGAAAAATGCTTACACGGTCGTACTC
AAAACGCAAACGAGAGTTTTAACGGTATGATTTGGAACCGCATCCCAAAA
GCCAACCATGTGGGTTTACACATCCTCAGCTTTGCTGTCTATGATGCTAT
TTCTCATTTCAACAATGGTGGTATAGCAGCCTACAACATCTTAACTAAAA
TGAACATGGAAGCAGGAAAGTACACGGTCAAAGGTCTAAACCTTCAGGAT
TTGATCCGTAAACGACGGTCAGCTTACCGAATGTCTTCTCCCCAAACAAA
GAGAAGAAAAGTTATCAGACACCTGAGAAAAACAAAACAAGACAAATTAA
TTGAAAAAGAAGGGAAAACTTATGAATATGGTGGCTTTGAATGTTGATTT
AATGTAGATTTGTAGAGACTTTATGTTTTTAGATTCAAAATATCAGTTAT
AATTTTTAGCGCGTTTTCTTATTTTTGCAAGTTTTTTCAACACGGGTCGG
GGCATAATTTCTGAACCGCTTTCTCAATCAAGCTCATTTTTTCAGTGAAT
GTTTATTGGAAATAAAAGGATGTTTTGGTTGTAGAGTTTTTTTGAATTTC
ACCATAAAAAGTGTTTTATGTTTGAAGCAACTTTTGTATTTTTTTGTATT
TTTTGCCGGTCCGAAGAGTTAAGCGGTCTGTTCTATGAGGTTCAAATTTC
AAAATTTTAATTCACCCAAAACATGCATCTATATAAGGGTGATCAACTCA
GAAAGTTTCATTGGTATATCTTTTTAACTTCTCCGGAAATTGACCGACCC
GTGTTTGACCTATTTTGGCACTTTTCGGTGCACGGCTCCGGCCGCCATTA
TGGATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040162XLOC_040162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064056-exon-scaffold_407-1575043694:101434..102271TCONS_00064056-exon-scaffold_407-1575043694:101434..102271Clytia hemisphaericaexon
TCONS_00064056-exon-scaffold_407-1575043694:97813..100754TCONS_00064056-exon-scaffold_407-1575043694:97813..100754Clytia hemisphaericaexon
TCONS_00064056-exon-scaffold_407-1510915933:101434..102271TCONS_00064056-exon-scaffold_407-1510915933:101434..102271Clytia hemisphaericaexon
TCONS_00064056-exon-scaffold_407-1510915933:97813..100754TCONS_00064056-exon-scaffold_407-1510915933:97813..100754Clytia hemisphaericaexon
TCONS_00064056-exon-scaffold_407-1491911889:101434..102271TCONS_00064056-exon-scaffold_407-1491911889:101434..102271Clytia hemisphaericaexon
TCONS_00064056-exon-scaffold_407-1491911889:97813..100754TCONS_00064056-exon-scaffold_407-1491911889:97813..100754Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:97813..102271 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.92223	2.01514	1.11309	0.869382	8.89228	6.62692	9.09484	9.11156	4.24954	7.03975	6.11893	3.86278	4.57365	4.5433	4.14889	4.52414	4.83661	4.58719	3.63306	4.29701	5.00946	5.16151	3.11416	4.02977	6.82636	7.77629	4.16371	2.77507	10.4957	9.34624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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