TCONS_00064055 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064055
Unique Name	TCONS_00064055
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	651

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_407:45184..47989-

transcript sequence

>TCONS_00064055 ID=TCONS_00064055|Name=TCONS_00064055|organism=Clytia hemisphaerica|type=transcript|length=651bp
AGcaaaaagaaatctttaaaaGCAACAAAATACCATATCACAAAATATTC
ATATTACACAAACACTTCAACTTTACACCTCAACTGATATTAATCACAAG
AAATCATTCCAATATGCGGCGCTGGAAGCAACTTGAAGGAGAAAGTGAAC
TGAAACTTTACAACAGTCTTACCAGAGAAAAGAATCCATTCATACCACAT
GAAGGAAAACAAGTTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGC
TTCCCATATGGGTCATGCAAGatcTTACATCACCTTCGATATTTTAAGAA
GAGTTCTTTCAGATTATTTCAACTACGACATTTTTTATGTAATGAACATC
ACTGATATTGATGATAAGATTATAAACAGAGCAAGGCGGAATCATTTAAT
GAAAGAATACAGAGATGGAAACCCAGAAGCAAAAACTGTTCTTGATGACC
TTCAAGAAGCTTTAGTGGCTTTCGTTGCAAAGATAGAAAAAACAACAGAC
CCTGATAAAAAGAATatgctgaaaaaaatcatgGAAAATGTGAAGAATGC
GCAAGGAATTTTGGAGACTGCTATCAAAGAATCTAAAGAAATTGAGAAAT
CCACTAATGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATCTCCTC
g

Run BLAST on NCBI

transcript from alignment at scaffold_407:45184..47989-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064055 ID=TCONS_00064055|Name=TCONS_00064055|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_407:45184..47989- (Clytia hemisphaerica)
AGCAAAAAGAAATCTTTAAAAGCAACAAAATACCATATCACAAAATATTC
ATGTAAGTATTTTTGTGATTGTGTTACCATGCCTCGATCAGAATCATTGA
TCATCAAATTTGAATAACACTTGTGCATTATGATACTTCTTCGTCAAACT
TTTAACGTCATGGGTTTTAAGTAGTATGCTTCGAAAAATTTAGTTAGCTT
TTATATGATAAATGGAAATTGTTTCAATAAAGAGCCAATCAACCTTAAAA
TATGATTAGTAACAGCAACAAGAATGGCAGATGAAAGTAAAGATGAGAAA
GAAAGTTATTTTTTTTGTCGTGAGGAATTTCTTTAGGATTCCTCATTCAT
ACTGCTACTGTTATTTTACCTCTAAACCTATTTAAGGCTATTTAGATCCA
CCTGGAACTTGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTT
ACACCTCAACTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTG
GAAGCAACTTGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCA
GAGAAAAGGTAAATTATAATGTTTGTTACCTTTTTCCCTTTTCTCTACTA
TTTTCTGGAAGTTTCAAGCATCAAGGCATCAAATAGTATTTTTGTCTTGA
TCCTTTGTCAAAATATTATACTACTTTTTTCCCAATTATAGTTTCTTTTG
TTTTCAAATAATTGTTATAATCATTTTGATTCTCTAAATTTTGAAATGGT
AATATTATTATCTTTCTATTTGTTATAGAATCCATTCATACCACATGAAG
GAAAACAAGTTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGCTTCC
CATATGGGTCATGCAAGGTTTGCAAATCCCCTTTGAAGTAAACATATTTT
TCTGTATGGAACCAAGTTGCTAATGTACAAAATTAGGAAGTTGTCAGAAA
ATGAGCATTGCTAAGCAAACCCAGCCCTGACCTGGAAATTGGAGTTACTT
ATAAAAAACATAATGTGTAAACGGAAATGAGATTTCATGGTTTATAAAAC
GTTCCAACTTATCTTTTGGATTTATAAATAAAGTTGCATTTTTTTCTATT
TTCAACCTTTGCTTTGACTTGAGAATCTTAATTTAGCTCAACTTACCTTC
GATTATATTATGATAGATTATCAAATTTTTCATTTTAGATCTTACATCAC
CTTCGATATTTTAAGAAGAGTTCTTTCAGATTATTTCAACTACGACATTT
TTTATGTAATGAACATCACTGATATTGATGATAAGGTACTTATTGTTTTT
TTGCATTTTCTCTTTCTGAATTACTCGTGGGTTTGAATATCTGAAAAAGT
TAAAAATATTTTTTAAAACACAAAGCGTTCTAGTATTCTCCTAGTCAAGA
GTCCCTATATTGTCAGTTTTATTATTTCTTTGAAGTTACATGATCTTAAT
AATCTCAATTTAAATTTTAATTTCATTCAGAATAGCTTTTTTTCTCCATA
TCTGAACTGAATATAAATTTTCAGAATAAAGAAAACACATCTATTTAGAA
GATGTTTTGCTCATATCTTTGAGCACTATCCAGTCTAAAAGAGAAAAAAT
AACAAATTAGTCCTAAATAAATCAGATAAATTAAAAAGAAAAAAAAATCT
TGAAAAAAATACACCCTCTTTCAAACACAAACAAATTACATTAGTTTGAT
GCTTGTTTGACTAACAATTTTAATATTAATCATAATGTTTCTCAGATTAT
AAACAGAGCAAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACC
CAGAAGCAAAAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGGTTGGT
GAATCTTTGTGTCTTGTATTTAAAACCTCAACCAAGTTCAAAAAATATAA
TCCAAAATGTGTATTTAAAAAAATTCACTTTTTTCCGTACATAATTTCTA
AAATAACCAGCACCGAGATTGCCAAATCCCAATTTCTTTAGTTTGCTTCC
CAATCTTTATACTCTCTTGTTTTAAGGCTGTTTTGTTTTATGTTTTGACT
TCATTAGAGAAAGACTGTATACTTTAAACGATATTAATCAAAGATTAGAC
TAATTTAAACTTCTCCTTAAAAGACACAAAATATACTGGTTGAATTTATT
CTCTCGTTTAAGGCTTTCGTTGCAAAGATAGAAAAAACAACAGACCCTGA
TAAAAAGAATATGCTGAAAAAAATCATGGTATATTTAAATATGAAATTTT
ATTCTGATAAGATTTCCTAATTTAAACAATTGGATTTATAAAGTTGTTTC
TTTGGTGGAGTTGATATTATCTTTAAATTAATTTGAAGTGGTTCAAACAT
GTACGCTTATATGTTTTTGGGTAGGAAAATGTGAAGAATGCGCAAGGAAT
TTTGGAGACTGCTATCAAAGAATCTAAAGAAATTGAGAAATCCACTAATG
TAAGTTCGTTAACAATCATATGTTTGATAAAGTTATTTGCTTTTGCAAAT
TCTTCATTATATCCTAAGTTTTTCCTTCAAATTCAGCACTCTCATGCTCT
GCCTTATTATAGGACATCTCACAATCATAGTTTAAGACTTGATGGTCTTC
CATTTTATTTGAATTCTTTTCAATAATTTCCCCTACCATTTTAGCATAAT
TTCTTTACTTTTTTTCCAAGAACGTTTTTTTAAATGCACCTAACGAAACT
GCAAAAATTGAACTATAATGTTAGTTAATACTGATATTTATTTATTTTTC
ATATTTTTTGTAGGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATC
TCCTCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040161	XLOC_040161	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_407	supercontig	scaffold_407:45184..47989 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.7038	20.0604	20.1321	13.4553	4.60438	0	2.64971	11.697	14.488	16.65	5.46422	8.06219	7.06798	3.98172	7.47283	7.98445	10.3933	10.1498	7.76235	8.17653	12.1919	15.2705	19.814	15.3439	0	0	9.55294	5.63387	17.1131	14.7473

Blast

[Close]

BLAST of TCONS_00064055 vs. Swiss-Prot (Human)
Match: SYCC (Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 5.006e-60
Identity = 93/143 (65.03%), Postives = 112/143 (78.32%), Query Frame = 3

Query:  150 LKLYNSLTREKNPFIPHEGKQVFWYSCGPTVYDASHMGHARSYITFDILRRVLSDYFNYDIFYVMNITDIDDKIINRARRNHLMKEYRDGNPEAKTVLDDLQEALVAFVAKIEKTTDPDKKNMLKKIMENVKNAQGILETAIK 578
            L LYNSLTR K  FIP +GK+V WY CGPTVYDASHMGHARSYI+FDILRRVL DYF +D+FY MNITDIDDKII RAR+NHL ++YR+  PEA  +L+D+Q AL  F  K+ +TTDPDKK ML++I   V+ A   LE A++
Sbjct:   29 LHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYREKRPEAAQLLEDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQ 171

The following BLAST results are available for this feature:

BLAST of TCONS_00064055 vs. Swiss-Prot (Human)

BLAST of TCONS_00064055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYCC	5.006e-60	65.03	Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens...	[more]

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TCONS_00064055 (transcript) - C. hemisphaerica