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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064049 ID=TCONS_00064049|Name=TCONS_00064049|organism=Clytia hemisphaerica|type=transcript|length=1605bp
AATTCATCATCTCTGAACGCACTCAGAAAAGTCACATAATACAAAATGAT
CGTGCAAAGTGCTCGTCTTCTATACTGTTTCGTGAAATATTCCTTTCGAC
GTCCAAACatatttcttttgttacaatctttttggtaaatttctcctgta
aaaatctgtttttcctttctttcgCGTTGTTAAATTTTGAGCAGAAATTT
TGTACTGATCAATGTCTTGAAACATTTGATTTCCAAAgtgaattgaaatt
ttctttacctttttGAACAATCTCTTCAATATTCTTTCTGACTTAAATAT
CTTCAACTCCTTGATATAACAACATGCATAAGTTTCTATAAAAATGATCT
GTTGAAAGAATTACATGTTATGTTTTCATTCTATGGGTACGTACAAGCAA
AAATAAAGCAGAGGTCATATTACAAAACCATGACTGACTTGACATTGATG
CCATGttggttttgatgacgtcaacatTATCTAAAATCCAAATCCATAAT
GAGAGATTGGACCGACATCATATCAAAGTTAAGAGTTATCAGACTTATTT
GAAGTTCTATTTAGCGACCCCTGATAACCCCAGTCGACGCTGTTGTTTCG
TGCAAGCCCCGTGAATTTAAAACcatttctaaaaaattggtGATACTCCG
CACTTTTTTATACATTGCTCTTAATGGGAAAATTATTACTGAAAGTACTA
CGTCGTTGAAAAGATGATTTTGAGTGGAATGGCTCAGTCCTACGTGGTTC
TTTTAGAATTTGTCCAAAAGACCAGTTTTTAGTCAGTTATCAATGTTATT
GAATTGCATTGAATTGCATAACAAACAGCTCTATAGCGGCCTTCCGTTGT
CGACGTACTCGAGCTACATAGAAAGTTCACCAGTAGAAATACGAAATAAG
CTAAAGAGTTTGCGATAGCATTACAATCAAGAAATGTGAAGATAATTGGG
CTTTCATTACCATTCATATCGTATAATATTGGTCCTGAAATCCCAAGGAA
TAAAAAACTTGTGATAAAACATATCATTAACGTTCTGAATGACTTTTTTC
GTTGGTTAGATGGATTGGTTCTGGATTTCACGGCACCACACCTGCACATC
TTGGTCATAATCGAACCATAAACGAAAATACAGGTCACACACGCCAGTAT
TACAGCAGCATACAAAAAGTAAATATTGAAACTATCCAAAACTTTCTCCC
ACCATAATGAAAATCCAGTCGATCCCAGGGCCAAACCAAAAATCCAGAGT
AGTATTAAAAACTTGGTAATGCGTTTCCCAGATACGACTACACGATGTTT
AAACGGATGAAATATAGCAAAATATTTATCCAATGTTAAGCTTGTCACGT
TCAAGCCAGAAATTGCAGCTAgagaaaaattgacttcatcgATACTTGAT
GTGATGATATGACTGTTCTTGATTTTGAGGCTGAAAACGACAGCGATTAA
TGATGTCGCACATGTCAGGATATCAGCAATTGAGATGCTGAGTAAAAACC
TTTCCACATTGCTTTTCCTCTTCTTGCACAAAATGTAGATGATTTGAATT
GAGTTCAATAATGCACCAATAGATCCAAGACATACCTCTGCATAAGTCAT
TGGAG Run BLAST on NCBI transcript from alignment at scaffold_407:404608..406281+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064049 ID=TCONS_00064049|Name=TCONS_00064049|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at scaffold_407:404608..406281+ (Clytia hemisphaerica)
AATTCATCATCTCTGAACGCACTCAGAAAAGTCACATAATACAAAATGAT
CGTGCAAAGTGCTCGTCTTCTATACTGTTTCGTGAAATATTCCTTTCGAC
GTCCAAACatatttcttttgttacaatctttttggtaaatttctcctgta
aaaatctgtttttcctttctttcgCGTTGTTAAATTTTGAGCAGAAATTT
TGTACTGATCAATGTCTTGAAACATTTGATTTCCAAAgtgaattgaaatt
ttctttacctttttGAACAATCTCTTCAATATTCTTTCTGACTTAAATAT
CTTCAACTCCTTGATATAACAACATGCATAAGTTTCTATAAAAATGATCT
GTTGAAAGAATTACATGTTATGTTTTCATTCTATGGGTACGTACAAGCAA
AAATAAAGCAGAGGTCATATTACAAAACCATGACTGACTTGACATTGATG
CCATGttggttttgatgacgtcaacatTATCTAAAATCCAAATCCATAAT
GAGAGATTGGACCGACATCATATCAAAGTTAAGAGTTATCAGACTTATTT
GAAGTTCTATTTAGCGACCCCTGATAACCCCAGTCGACGCTGTTGTTTCG
TGCAAGCCCCGTGAATTTAAAACcatttctaaaaaattggtGATACTCCG
CACTTTTTTATACATTGCTCTTAATGGGAAAATTATTACTGAAAGTACTA
CGTCGTTGAAAAGATGATTTTGAGTGGAATGGCTCAGTCCTACGTGGTTC
TTTTAGAATTTGTCCAAAAGACCAGTTTTTAGTCAGTTATCAATGTTATT
GAATTGCATTGAATTGCATAACAAACAGCTCTATAGCGGCCTTCCGTTGT
CGACGTACTCGAGCTACATAGAAAGTTCACCAGTAGAAATACGAAATAAG
CTAAAGAGTTTGCGATAGCATTACAATCAAGAAATGTGAAGATAATTGGG
CTTTCATTACCATTCATATCGTATAATATTGGTCCTGAAATCCCAAGGAA
TAAAAAACTTGTGATAAAACATATCATTAACGTTCTGAATGACTTTTTTC
GTTGGTTAGATGGATTGGTTCTGGATTTCACGGCACCACACCTGCACATC
TTGGTCATAATCGAACCATAAACGAAAATACAGGTCACACACGCCAGTAT
TACAGCAGCATACAAAAAGTAAATATTGAAACTATCCAAAACTTTCTCCC
ACCATAATGAAAATCCAGTCGATCCCAGGGCCAAACCAAAAATCCAGAGT
AGTATTAAAAACTTGGTAATGCGTTTCCCAGATACGACTACACGATGTTT
AAACGGATGAAATATAGCAAAATATTTATCCAATGTTAAGCTTGTCACGT
TCAAGCCAGAAATTGCAGCTAgagaaaaattgacttcatcgATACTTGAT
GTGATGATATGACTGTTCTTGATTTTGAGGCTGAAAACGACAGCGATTAA
TGATGTCGCACATGTCAGGATATCAGCAATTGAGATGCTGAGTAAAAACC
TTTCCACATTGCTTTTCCTCTTCTTGCACAAAATGTAGATGATTTGAATT
GAGTTCAATAATGCACCAATAGATCCAAGACATACCTCTGCATAGGTCAT
TGGAGCCATTTTGAGATGGGTTTGCGACATGATGAAATTACCANCAAGAC
ATACCTCTGCATAAGTCATTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064049-exon-scaffold_407-1491911889:404608..406188 | TCONS_00064049-exon-scaffold_407-1491911889:404608..406188 | Clytia hemisphaerica | exon |
| TCONS_00064049-exon-scaffold_407-1510915933:404608..406188 | TCONS_00064049-exon-scaffold_407-1510915933:404608..406188 | Clytia hemisphaerica | exon |
| TCONS_00064049-exon-scaffold_407-1575043694:404608..406188 | TCONS_00064049-exon-scaffold_407-1575043694:404608..406188 | Clytia hemisphaerica | exon |
| TCONS_00064049-exon-scaffold_407-1491911889:406258..406281 | TCONS_00064049-exon-scaffold_407-1491911889:406258..406281 | Clytia hemisphaerica | exon |
| TCONS_00064049-exon-scaffold_407-1510915933:406258..406281 | TCONS_00064049-exon-scaffold_407-1510915933:406258..406281 | Clytia hemisphaerica | exon |
| TCONS_00064049-exon-scaffold_407-1575043694:406258..406281 | TCONS_00064049-exon-scaffold_407-1575043694:406258..406281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:404608..406281 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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