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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064048 ID=TCONS_00064048|Name=TCONS_00064048|organism=Clytia hemisphaerica|type=transcript|length=2172bpRun BLAST on NCBI protein sequence of TCONS_00064048-protein >TCONS_00064048-protein ID=TCONS_00064048-protein|Name=TCONS_00064048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp MVGNKMTTRFSFNNLLIFIAAFGAVSAWTRNYRNGGPSNQNAPDNVWKWERun BLAST on NCBI transcript from alignment at scaffold_407:388474..396035+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064048 ID=TCONS_00064048|Name=TCONS_00064048|organism=Clytia hemisphaerica|type=transcript|length=7562bp|location=Sequence derived from alignment at scaffold_407:388474..396035+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_407:388474..396035+ >TCONS_00064048 ID=TCONS_00064048|Name=TCONS_00064048|organism=Clytia hemisphaerica|type=CDS|length=17739bp|location=Sequence derived from alignment at scaffold_407:388474..396035+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064048 vs. Swiss-Prot (Human)
Match: HEXB (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3) HSP 1 Score: 220.705 bits (561), Expect = 2.154e-62 Identity = 152/482 (31.54%), Postives = 235/482 (48.76%), Query Frame = 3
Query: 549 RSMEISIILETNAEKL-TLYTDESYSLKVNTNNRLISVTIKAKNFFGARHALETLSQLTAYHQGHNSLQIIDYADIYDKPAYPYRGVLLDTSRNFYSVPSIRRLIKTMSYNKLNTFHWHITDTHSFPIFIKSVPQLTQYGAYSNTRVYTPRQVKQIVEYGRQHGVRVLPEFDQPAHTGEGWQFGEKEGLGKLAVCVNKEPWQKFCLEPPCGQLNPINQNLYHILSKIYKEYFDLFDPDLFHAGGDEINFNCWNTTKEITDWLHTNYGGRNEEEMMRMWNLFLEKSSKKIYEANDGKEIPLILWTSKMTSIKYLNRFLNPKQHIIQIW-TSTKNKGIVDIVNSGFKTIFTN-WNTLYLDCGVGSWVGEGNNWCSPYKDWKQLYDNDPIKILKDLNVNVTAQIRKNILGQEAPLWSEQADESVSEAKIWPRAAALAERLWTNPE-HNWRKAEYRLVYHRQRLVNRGIRADALQPLWCKQNSGHC 1982
+ + +SI L++ + + +DESY+L V +KA +GA LET SQL Y + + I+ + I D P + +RG+L+DTSR++ V I + + M++NK N HWHI D SFP + P+L+ G+YS + VYTP V+ ++EY R G+RVLPEFD P HT W G+K+ L NK F G +NP Y L+ +KE ++F H GGDE+ F CW + +I D++ G + ++ + +++K I N G I+W L I+++W S + + + SGF I + W YLD S +DW++ Y +P L+ T + ++ +G EA LW E D + ++WPRA+A+ ERLW++ + + A RL HR R+V RGI A QPL+ +G+C
Sbjct: 125 QQLLVSITLQSECDAFPNISSDESYTLLVKEP----VAVLKANRVWGALRGLETFSQLV-YQDSYGTF-TINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHT-LSWGKGQKDLLTPCYSRQNK--LDSF------GPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTD---FKKLESFYIQKVLDIIATINKGS----IVWQEVFDDKAKLA-----PGTIVEVWKDSAYPEELSRVTASGFPVILSAPW---YLDL------------ISYGQDWRKYYKVEP------LDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAA---QPLY----AGYC 551 The following BLAST results are available for this feature:
BLAST of TCONS_00064048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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