|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064038 ID=TCONS_00064038|Name=TCONS_00064038|organism=Clytia hemisphaerica|type=transcript|length=952bp
TTCAAATTTTATTCGTGcattaaatcaaaaaaatcaaaaaggtcTTAAAT
ACAACAACGGTCACGATGATATAAATACATTAAATCATATGAAAAATGCt
tacaaaatgctaaaaaatcaATACCAAAAATGGAATACAAAAAGCGTTAC
AAGATTATAAGAATGTTTGTTTTTGTCggtaaaaattgttaaaaaagtgA
AACTGAACAGACGAATTTTGTCAATCAATGcatctttaaaaaatgaaagt
aattcAAAATTGCAAATTTCATTTGTAGCGTGAAAGTTTGTCTATTGGCG
TTTAAGTGGAGACAGAATCGTAACCACCACACGCCCGTCTGATGGAGTAA
ATAACGCCCATATCTTTCTGGTACAAAATGATATCGATGATCAAAAGTAC
AACCAGAATGACCAGGATGCAAATGACAGCAATGACTCCTTTCGAAAGTT
TCGATTTAGGCTTTTGAGTGACAGGTGCTTGTGAGGTTGCTGGAGTCGTT
GTGTTTGAAGGTGTGATTGTTGTGGTTGTGTTAGCAGTTGTTGTTgtggt
ggttgttgttgtggtgGTCGGTGGAGGTGGGTTTGGGTCATAAGCTGTAT
AATTTGCACTGAAACCTTTGCTTTGTTTTGCTTCAGTCTTTGTAGAAGTG
AAAGTGACTGTTAATTCGTTCCCATACTCCTGTGCTTCTATTGGTGGAGG
ATGTGAGTTACAATACAGTAATGGTGGATCTCGTGGGTCAGACGAATGAG
AAACAGCGATACGGTTCGTACCACATGCAACCTCACTGCTGTCAGAACTT
AAGATATCCATATCTGGGAAttgtaatttgattttcaagttgggTGCGAC
TTTGATTTTCCATTGACACGTGTCACCGAATGGGTAGTTTTGTGGATATC
CAGGAGATGTAAAAGTTCCTGTCCCGTTTGTCAACGTTTTTGCGTCGCAT
GC Run BLAST on NCBI transcript from alignment at scaffold_407:148097..149320+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064038 ID=TCONS_00064038|Name=TCONS_00064038|organism=Clytia hemisphaerica|type=transcript|length=1224bp|location=Sequence derived from alignment at scaffold_407:148097..149320+ (Clytia hemisphaerica)
TTCAAATTTTATTCGTGcattaaatcaaaaaaatcaaaaaggtcTTAAAT
ACAACAACGGTCACGATGATATAAATACATTAAATCATATGAAAAATGCt
tacaaaatgctaaaaaatcaATACCAAAAATGGAATACAAAAAGCGTTAC
AAGATTATAAGAATGTTTGTTTTTGTCggtaaaaattgttaaaaaagtgA
AACTGAACAGACGAATTTTGTCAATCAATGcatctttaaaaaatgaaagt
aattcAAAATTGCAAATTTCATTTGTAGCGTGAAAGTTTGTCTATTGGCG
TTTAAGTGGAGACAGAATCGTAACCACCACACGCCCGTCTGATGGAGTAA
ATAACGCCCATATCTTTCTGGTACAAAATGATATCGATGATCAAAAGTAC
AACCAGAATGACCAGGATGCAAATGACAGCAATGACTCCTTTCGAAAGTT
TCGATTTAGGCTTTTGAGTGACAGGTGCTGAAAAGATGAGGTTAAATGTG
TCTGCATTTAAACATTTTATCCATAAATATTCAAAGTTTGTAACAAGTTT
TTGAGAAAAGAAATCAGGCCATTAAAAGTAAGAACCCCAtaaagtcattg
aaatcaatatcgattaaaaactttttttaagcaTGGTTGACGATTATATC
TTATTGAATGGAAAGAACCTTAGTAATAACTTTGCCGAAAACTAATGAAC
GATATCGGATGAAATAAAGTTTTATTCATTTGACGATCGAATTACAAACC
TTGTGAGGTTGCTGGAGTCGTTGTGTTTGAAGGTGTGATTGTTGTGGTTG
TGTTAGCAGTTGTTGTTgtggtggttgttgttgtggtgGTCGGTGGAGGT
GGGTTTGGGTCATAAGCTGTATAATTTGCACTGAAACCTTTGCTTTGTTT
TGCTTCAGTCTTTGTAGAAGTGAAAGTGACTGTTAATTCGTTCCCATACT
CCTGTGCTTCTATTGGTGGAGGATGTGAGTTACAATACAGTAATGGTGGA
TCTCGTGGGTCAGACGAATGAGAAACAGCGATACGGTTCGTACCACATGC
AACCTCACTGCTGTCAGAACTTAAGATATCCATATCTGGGAAttgtaatt
tgattttcaagttgggTGCGACTTTGATTTTCCATTGACACGTGTCACCG
AATGGGTAGTTTTGTGGATATCCAGGAGATGTAAAAGTTCCTGTCCCGTT
TGTCAACGTTTTTGCGTCGCATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064038-exon-scaffold_407-1491911889:148097..148573 | TCONS_00064038-exon-scaffold_407-1491911889:148097..148573 | Clytia hemisphaerica | exon |
| TCONS_00064038-exon-scaffold_407-1510915933:148097..148573 | TCONS_00064038-exon-scaffold_407-1510915933:148097..148573 | Clytia hemisphaerica | exon |
| TCONS_00064038-exon-scaffold_407-1575043694:148097..148573 | TCONS_00064038-exon-scaffold_407-1575043694:148097..148573 | Clytia hemisphaerica | exon |
| TCONS_00064038-exon-scaffold_407-1491911889:148846..149320 | TCONS_00064038-exon-scaffold_407-1491911889:148846..149320 | Clytia hemisphaerica | exon |
| TCONS_00064038-exon-scaffold_407-1510915933:148846..149320 | TCONS_00064038-exon-scaffold_407-1510915933:148846..149320 | Clytia hemisphaerica | exon |
| TCONS_00064038-exon-scaffold_407-1575043694:148846..149320 | TCONS_00064038-exon-scaffold_407-1575043694:148846..149320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:148097..149320 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
|
