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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064036 ID=TCONS_00064036|Name=TCONS_00064036|organism=Clytia hemisphaerica|type=transcript|length=1841bp
GCAAAACTTCCtccaaagaatttttcaaaagattttttttgttgagaaat
ttATCATGAGGAAAATATGTTTAGTTTagataaaaaagaagaattattCA
AGGTTCGAATCCACGTGGAAGCCACAGGCGACCACATCACgctcaagaaa
atcaaaaatgatctTAAGATTAGTCAACTGAAGGAAAAGATCGAAGGATT
TGTTGGCATCCCAAGGTACGTCACCGTCAAATTCAACTTTATTTTATTGT
AAGAACTTTAAACTCAATTTAACACAGAAAATTAATCTAAAATTGATGAC
AATCAgctttaaaaaacaaaagaaaataaacacGAAATAAACACTATAAA
TCTTTTAATCCTATAGGGTAAAATTAGTCcagatgaaaagtgaaaaaaat
tgtaagcAATAGAAAGAGTTACTTCAGAGGGTAATTTTGTTTCCTGCATT
TTGAGAAGATTGAGTTGATTTGACCAAACCACATGTGGTGGAAAATTTCG
TCTCCGAGATCTCTCTCCCAGAGTTTGATGTGAGCTTTAGACTGGAGTAT
TGGAGATGACGGGATATCGTCATCAATGATAATTTCAATCAAATTCTCTG
TTCGAACTGTTGTTACATTCATTCTAAGAGGACGGTTTTTTctttcgatg
aaaatttgaacattATTTTGTGAATTAACTACTTTATCCTTGATCGTATT
GGTTGAAATTCTGTCCAATCCGTTTTCTATTTTATAATGTTGTTTCCCTT
CAAATACTATCACATAAGAACTCGGTTTGAGAACTTTCTCCAGGAAGTCA
AATAGATGATAGTCGTTCCATTGCCAGGACGGATCATCCAGTAAACCGTT
AGTTTTATACTGAACAACTTTTGTCCAAAAATACATTTTCAAATCGTCAG
AGAATATACAAGGATATTTTCTACGAGCACCAAATTCTTTAAAACGATCG
TAATGAGCATTCTTGAGAACACCCATTAAATCTTTATGCATGTGTTGACT
CAGCGCTATTTCCTTTAACGAATCGATATGGAAATAACGATGTCTTGGCA
TCCACCTCTTGACAACCAAACACATCGTATCAATTGTGCCACAAATAAAT
ACCACATTATAATTTTGTTCATTCTCCACGGACTGCAATTTCATTGATAA
TAGCTCTTTTTCTGGCCTGCCAAACCATGAAGCCCAATAGAACATGACAT
AAATCAAAGTATGTTGTATTTTCTCTTCGTTGCCAACTTCTGAAAGTGTT
GACAAAAACTGCATTATATTATTAGTTTCCATAGTTTGGCTGGTAGTTAT
TATGTCATCAAAAGCATCCAGAAAGTTCGATTCTGTCAATTGAATCAGCG
AATTCTTTTTCACTGAGTACATCCGGACATCAGTACATTTTTCAAGTAAA
AGTANCAACTGAATCAGCGAATTCTTTTTCACTGAGTACATCCAGACATT
AGTACATTTTTCAAGTAAAAGCGATCTTGTTAACACTGTTAGTTGGTCAA
TCAAAGTGTTTGTGTATCTTCTAAAGTCGTGATTTCGATAAGGTTCTGGT
CGATTTTCAATATCAGGAAAAAATGTGACCTTCTTTCTTTTGATGCAAGG
TGCAGCAATATCATTCGCCCTGCCAGCTGCAGTTATATTGGTGTCCATCA
AATGGAATAAAAGAATCCATATTTTGACTCCCATTAGATCCCAAAGATCG
CATTAAAGTGACTCTTGAACAAATTGAAACGAAACGAAAAATCTCATAAA
CTGCTTAACTTCCAAAcaaaaatagcttcaaaaaagCTATAAAAGGGAAA
TGACGCTACTTCTGTTGTAAAATCCAAAGAAACCTTTTGAA Run BLAST on NCBI transcript from alignment at scaffold_407:126818..128658+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064036 ID=TCONS_00064036|Name=TCONS_00064036|organism=Clytia hemisphaerica|type=transcript|length=1841bp|location=Sequence derived from alignment at scaffold_407:126818..128658+ (Clytia hemisphaerica)
GCAAAACTTCCtccaaagaatttttcaaaagattttttttgttgagaaat
ttATCATGAGGAAAATATGTTTAGTTTagataaaaaagaagaattattCA
AGGTTCGAATCCACGTGGAAGCCACAGGCGACCACATCACgctcaagaaa
atcaaaaatgatctTAAGATTAGTCAACTGAAGGAAAAGATCGAAGGATT
TGTTGGCATCCCAAGGTACGTCACCGTCAAATTCAACTTTATTTTATTGT
AAGAACTTTAAACTCAATTTAACACAGAAAATTAATCTAAAATTGATGAC
AATCAgctttaaaaaacaaaagaaaataaacacGAAATAAACACTATAAA
TCTTTTAATCCTATAGGGTAAAATTAGTCcagatgaaaagtgaaaaaaat
tgtaagcAATAGAAAGAGTTACTTCAGAGGGTAATTTTGTTTCCTGCATT
TTGAGAAGATTGAGTTGATTTGACCAAACCACATGTGGTGGAAAATTTCG
TCTCCGAGATCTCTCTCCCAGAGTTTGATGTGAGCTTTAGACTGGAGTAT
TGGAGATGACGGGATATCGTCATCAATGATAATTTCAATCAAATTCTCTG
TTCGAACTGTTGTTACATTCATTCTAAGAGGACGGTTTTTTctttcgatg
aaaatttgaacattATTTTGTGAATTAACTACTTTATCCTTGATCGTATT
GGTTGAAATTCTGTCCAATCCGTTTTCTATTTTATAATGTTGTTTCCCTT
CAAATACTATCACATAAGAACTCGGTTTGAGAACTTTCTCCAGGAAGTCA
AATAGATGATAGTCGTTCCATTGCCAGGACGGATCATCCAGTAAACCGTT
AGTTTTATACTGAACAACTTTTGTCCAAAAATACATTTTCAAATCGTCAG
AGAATATACAAGGATATTTTCTACGAGCACCAAATTCTTTAAAACGATCG
TAATGAGCATTCTTGAGAACACCCATTAAATCTTTATGCATGTGTTGACT
CAGCGCTATTTCCTTTAACGAATCGATATGGAAATAACGATGTCTTGGCA
TCCACCTCTTGACAACCAAACACATCGTATCAATTGTGCCACAAATAAAT
ACCACATTATAATTTTGTTCATTCTCCACGGACTGCAATTTCATTGATAA
TAGCTCTTTTTCTGGCCTGCCAAACCATGAAGCCCAATAGAACATGACAT
AAATCAAAGTATGTTGTATTTTCTCTTCGTTGCCAACTTCTGAAAGTGTT
GACAAAAACTGCATTATATTATTAGTTTCCATAGTTTGGCTGGTAGTTAT
TATGTCATCAAAAGCATCCAGAAAGTTCGATTCTGTCAATTGAATCAGCG
AATTCTTTTTCACTGAGTACATCCGGACATCAGTACATTTTTCAAGTAAA
AGTANCAACTGAATCAGCGAATTCTTTTTCACTGAGTACATCCAGACATT
AGTACATTTTTCAAGTAAAAGCGATCTTGTTAACACTGTTAGTTGGTCAA
TCAAAGTGTTTGTGTATCTTCTAAAGTCGTGATTTCGATAAGGTTCTGGT
CGATTTTCAATATCAGGAAAAAATGTGACCTTCTTTCTTTTGATGCAAGG
TGCAGCAATATCATTCGCCCTGCCAGCTGCAGTTATATTGGTGTCCATCA
AATGGAATAAAAGAATCCATATTTTGACTCCCATTAGATCCCAAAGATCG
CATTAAAGTGACTCTTGAACAAATTGAAACGAAACGAAAAATCTCATAAA
CTGCTTAACTTCCAAAcaaaaatagcttcaaaaaagCTATAAAAGGGAAA
TGACGCTACTTCTGTTGTAAAATCCAAAGAAACCTTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064036-exon-scaffold_407-1491911889:126818..128658 | TCONS_00064036-exon-scaffold_407-1491911889:126818..128658 | Clytia hemisphaerica | exon |
| TCONS_00064036-exon-scaffold_407-1510915933:126818..128658 | TCONS_00064036-exon-scaffold_407-1510915933:126818..128658 | Clytia hemisphaerica | exon |
| TCONS_00064036-exon-scaffold_407-1575043694:126818..128658 | TCONS_00064036-exon-scaffold_407-1575043694:126818..128658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:126818..128658 + |
Blast
The following BLAST results are available for this feature:
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