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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064001 ID=TCONS_00064001|Name=TCONS_00064001|organism=Clytia hemisphaerica|type=transcript|length=322bp
CAAACACACCAGGGAGACATTGCGTACCATTTCCCTATTCAAGATTGCGA
TGAGTTCTTCAAAGAAGGCGAAGTTATTGGTTTATTCCAttgtaagaaag
aaaacaaaatgaagATCAAGAAACTGACTGCAGCCACCGCTCCCAGTGCT
TCACTTAAAGGTGTCATTACACGGTCACAATATCTGGAAGCCATGAAACC
TAAAGACCCCAATGTGATGACAGAGACAATCTGTATGCTTGGCATAGTTC
CTGTCAAAGTTCTTGGGAAAGTGAACGCAAACGACCCACTCTACGCGTCC
AAAAGTGAACCTGGAGTTGCAG Run BLAST on NCBI protein sequence of TCONS_00064001-protein >TCONS_00064001-protein ID=TCONS_00064001-protein|Name=TCONS_00064001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
QTHQGDIAYHFPIQDCDEFFKEGEVIGLFHCKKENKMKIKKLTAATAPSA
SLKGVITRSQYLEAMKPKDPNVMTETICMLGIVPVKVLGKVNANDPLYAS
KSEPGVA Run BLAST on NCBI transcript from alignment at scaffold_405:41827..43208- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064001 ID=TCONS_00064001|Name=TCONS_00064001|organism=Clytia hemisphaerica|type=transcript|length=1382bp|location=Sequence derived from alignment at scaffold_405:41827..43208- (Clytia hemisphaerica)
CAAACACACCAGGGAGACATTGCGTACCATTTCCCTATTCAAGATTGCGA
TGAGTTCTTCAAAGAAGGTATACACAATAGACATTTTCATAAATTACGTC
ACAAACAACACTTGTTTTCGATATATTGCTATTGATTCCCAGAAAAGTTC
AGAAAAAGTCGACTCTATATTAACAAAAGTAAAACTTGAAGGCTCGAGGC
AGTCGTTACACTCAAAAATAATTTATAAAAAGGCCTATTCATGATATTCA
TCCTGTAATATTTTCTACGGGAACATTCTGAATCTTGCCAATAATGGCAG
ATTTTAAAAAAATTTTCCAAAGCGTAAATTTCTTAATTTGCCACTATTGT
CAAAAAAAACCAGGGCGTTTCCCTAGAAAACATTACGTCATGATTGTCAT
GACTTCACTTTTCTTGAAATGTAACGTTTTCAAAATTGTCTTGCCATTGA
TATCAATGTTCGTGAGCGTTATACTTTTGGTGTGCAAGAATACCGTCTGC
GAGAAATTAATTTGCTCTAAACTGTACTCCTAATTTTTTGCCAGGCGAAG
TTATTGGTTTATTCCATTGTAAGAAAGAAAACAAAATGAAGATCAAGAAA
CTGACTGCAGCCACCGCTCCCAGTGCTTCACTTAAAGGTGTCATTACACG
GTCACAATATCTGGAAGCCATGAAACCTAAAGACCCCAATGGTAAGTCGC
TTTATAGCCTTTTTGTTATTCTCTTAGCGAATTGGCGGCCACCTACGCTG
AAGCCCTTAAAGAGCGGACCAATCTCCCATCGGGAAGAAGGATGATAGTC
GGGCTCAAGTACCCTTGAATGTAAGCCTGAAGAAATTCCTCTCACGCCCC
CTAATTTGAACTTATCCCAAGAAATTGTTTTGTTGGAATGAGCACTCCAT
ATTTGCACACGCTTTCCCTTTCGTGACTTTTCTTTGATATGTATAATGTG
TTTCCTGTACCTGATCCCGTGGTATTATGCACTTAAGTCAAGTAAGTAAG
TCAAGTTTCCTGTGCCATGGACCATTAGTTTTTGATTGGTCTAAATCACG
ACTGATTTAGGACAGCATACCTTAAGTGGATTAATTTTGGCGTGGATTTA
TTTGGCGAATGGCCGATTTTTGAAATTTTGACAGGGATTTAATTTGGCGA
TTTTTGACAAAATTTGTCAAATTCGCCAAGTTTAATTCCCGCCAAAATTT
ATTCACTTATGGTAATTATTTTTACCATTCTTCATCAAAAGTGTAGATAG
AATAAACTCTTTTATATATTCCAGTGATGACAGAGACAATCTGTATGCTT
GGCATAGTTCCTGTCAAAGTTCTTGGGAAAGTGAACGCAAACGACCCACT
CTACGCGTCCAAAAGTGAACCTGGAGTTGCAG Coding sequence (CDS) from alignment at scaffold_405:41827..43208- >TCONS_00064001 ID=TCONS_00064001|Name=TCONS_00064001|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_405:41827..43208- (Clytia hemisphaerica)
TGATGACAGAGACAATCTGTATGCTTGGCATAGTTCCTGTCAAAGTTCTT
GGGAAAGTGAACGCAAACGACCCACTCTACGCGTCCAAAAGTGAACCTGG
AGTTGCAGCGAAGTTATTGGTTTATTCCATTGTAAGAAAGAAAACAAAAT
GAAGATCAAGAAACTGACTGCAGCCACCGCTCCCAGTGCTTCACTTAAAG
GTGTCATTACACGGTCACAATATCTGGAAGCCATGAAACCTAAAGACCCC
AATGCAAACACACCAGGGAGACATTGCGTACCATTTCCCTATTCAAGATT
GCGATGAGTTCTTCAAAGAAGTGATGACAGAGACAATCTGTATGCTTGGC
ATAGTTCCTGTCAAAGTTCTTGGGAAAGTGAACGCAAACGACCCACTCTA
CGCGTCCAAAAGTGAACCTGGAGTTGCAGCGAAGTTATTGGTTTATTCCA
TTGTAAGAAAGAAAACAAAATGAAGATCAAGAAACTGACTGCAGCCACCG
CTCCCAGTGCTTCACTTAAAGGTGTCATTACACGGTCACAATATCTGGAA
GCCATGAAACCTAAAGACCCCAATGCAAACACACCAGGGAGACATTGCGT
ACCATTTCCCTATTCAAGATTGCGATGAGTTCTTCAAAGAAGTGATGACA
GAGACAATCTGTATGCTTGGCATAGTTCCTGTCAAAGTTCTTGGGAAAGT
GAACGCAAACGACCCACTCTACGCGTCCAAAAGTGAACCTGGAGTTGCAG
CGAAGTTATTGGTTTATTCCATTGTAAGAAAGAAAACAAAATGAAGATCA
AGAAACTGACTGCAGCCACCGCTCCCAGTGCTTCACTTAAAGGTGTCATT
ACACGGTCACAATATCTGGAAGCCATGAAACCTAAAGACCCCAATGCAAA
CACACCAGGGAGACATTGCGTACCATTTCCCTATTCAAGATTGCGATGAG
TTCTTCAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064001-exon-scaffold_405-1575043694:43142..43208 | TCONS_00064001-exon-scaffold_405-1575043694:43142..43208 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1575043694:42518..42664 | TCONS_00064001-exon-scaffold_405-1575043694:42518..42664 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1575043694:41827..41934 | TCONS_00064001-exon-scaffold_405-1575043694:41827..41934 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1510915933:43142..43208 | TCONS_00064001-exon-scaffold_405-1510915933:43142..43208 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1510915933:42518..42664 | TCONS_00064001-exon-scaffold_405-1510915933:42518..42664 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1510915933:41827..41934 | TCONS_00064001-exon-scaffold_405-1510915933:41827..41934 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1491911889:43142..43208 | TCONS_00064001-exon-scaffold_405-1491911889:43142..43208 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1491911889:42518..42664 | TCONS_00064001-exon-scaffold_405-1491911889:42518..42664 | Clytia hemisphaerica | exon |
| TCONS_00064001-exon-scaffold_405-1491911889:41827..41934 | TCONS_00064001-exon-scaffold_405-1491911889:41827..41934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_405 | supercontig | scaffold_405:41827..43208 - |
Blast
The following BLAST results are available for this feature:
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