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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063999 ID=TCONS_00063999|Name=TCONS_00063999|organism=Clytia hemisphaerica|type=transcript|length=1351bp
AAAACATCTCTTGGGCATATTTGCTGTAGGAATCTGTAGACTTGAAAACA
GATAACAAAATCTTCTGATGAATCAGATTTCTGTCACCGTCACCCTCATT
GCATGCATCTTTCATGTTGAGAAGGAGAACGGTGAGATAGATCGTCATCA
TACCATAATTTCTAGTATGATCATCTTCATTGTAAAAATTCCTTTGCAAA
ACAAATTCACCACAGAAACTTTCCATTACCTTTTCAAAGTAAGACTTCTT
GACCTCATTTGAATCGTGTATTTCTTCTGGGAAGGGATGGAATTTAGGAT
GTTCGTTTACATCACTCATGNCGTGTATTTCTTCTGGGAAGGGATGGAAT
TTAGGATATTCGTTTACATCACTCATACCAAAAAAATGGAAGGCTGCATT
TATAATGTATGCTTTACCCATGCTGATGAAGAGCTCTTCACTTCCTTCAA
AACTATCAAGGACTTTAGCTGGCGTGGCATTCTTTCTGTTGAGCTTTTCT
CTAAAGAATTTCAAAGTTCCTTTCTGATCAACAGACTCTGCTTTATGCAA
AATACATTATCTAGCGCCATATAGTTAAAGCataaaaagcataaaaaagc
tgatgatgcgcagggaacgaggttgggtcgtaagagccttaatgccccaa
acacaccacataatccacgcGACACAACACCCGCCCGCtgcgcatcgctc
tttttttttccttctagttattctagtgtaaatggtgccttaataaaatc
gagcGATATtagtcgaacgatcgaacatttttattcgaatcacgaatcgt
ctgtcgaaatcatcaaaacataaaaataaaacaaaaacaaaaatgtacaa
agatggcttgttgggcagttttgatttatttttcttgacaaattcgaaaa
atttgattacctccttacttctttatcatagaatatccacttggttttgc
aaggtaagtttcgttcactaaaagagcactcctcccgcccgcccgcgcga
cttgcaaaaacctctcattaattgaccttatttgatacttgatacttttG
CTGTTAAAattcaagggatgatgaagatcctttctatcaacgttcaaact
aatttttttccatttaactaggcacttcagtcacgtgactaaaagtTGTC
GCGAAAATGTAGCGGGGAATCGTTTCTTTATAAAGACGgggttttggatt
tttcaaaaaatagtatacattcttctatcaaaatatggcaggggttttta
ccagcctttcataaaacaaatgattgtgaTTGAAGCTCAGATGACTGCCT
GAGCTTCTCTCGTGTGTGCTGAAATTATTGTTTTCCCCAATAAAATTCTA
C Run BLAST on NCBI protein sequence of TCONS_00063999-protein >TCONS_00063999-protein ID=TCONS_00063999-protein|Name=TCONS_00063999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MGKAYIINAAFHFFGMSDVNEYPKFHPFPEEIHXMSDVNEHPKFHPFPEE
IHDSNEVKKSYFEKVMESFCGEFVLQRNFYNEDDHTRNYGMMTIYLTVLL
LNMKDACNEGDGDRNLIHQKILLSVFKSTDSYSKYAQEMF Run BLAST on NCBI transcript from alignment at scaffold_404:980194..981544 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063999 ID=TCONS_00063999|Name=TCONS_00063999|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_404:980194..981544 (Clytia hemisphaerica)
GTAGAATTTTATTGGGGAAAACAATAATTTCAGCACACACGAGAGAAGCT
CAGGCAGTCATCTGAGCTTCAAtcacaatcatttgttttatgaaaggctg
gtaaaaacccctgccatattttgatagaagaatgtatactattttttgaa
aaatccaaaacccCGTCTTTATAAAGAAACGATTCCCCGCTACATTTTCG
CGACAacttttagtcacgtgactgaagtgcctagttaaatggaaaaaaat
tagtttgaacgttgatagaaaggatcttcatcatcccttgaatTTTAACA
GCaaaagtatcaagtatcaaataaggtcaattaatgagaggtttttgcaa
gtcgcgcgggcgggcgggaggagtgctcttttagtgaacgaaacttacct
tgcaaaaccaagtggatattctatgataaagaagtaaggaggtaatcaaa
tttttcgaatttgtcaagaaaaataaatcaaaactgcccaacaagccatc
tttgtacatttttgtttttgttttatttttatgttttgatgatttcgaca
gacgattcgtgattcgaataaaaatgttcgatcgttcgactaATATCgct
cgattttattaaggcaccatttacactagaataactagaaggaaaaaaaa
agagcgatgcgcaGCGGGCGGGTGTTGTGTCgcgtggattatgtggtgtg
tttggggcattaaggctcttacgacccaacctcgttccctgcgcatcatc
agcttttttatgctttttatGCTTTAACTATATGGCGCTAGATAATGTAT
TTTGCATAAAGCAGAGTCTGTTGATCAGAAAGGAACTTTGAAATTCTTTA
GAGAAAAGCTCAACAGAAAGAATGCCACGCCAGCTAAAGTCCTTGATAGT
TTTGAAGGAAGTGAAGAGCTCTTCATCAGCATGGGTAAAGCATACATTAT
AAATGCAGCCTTCCATTTTTTTGGTATGAGTGATGTAAACGAATATCCTA
AATTCCATCCCTTCCCAGAAGAAATACACGNCATGAGTGATGTAAACGAA
CATCCTAAATTCCATCCCTTCCCAGAAGAAATACACGATTCAAATGAGGT
CAAGAAGTCTTACTTTGAAAAGGTAATGGAAAGTTTCTGTGGTGAATTTG
TTTTGCAAAGGAATTTTTACAATGAAGATGATCATACTAGAAATTATGGT
ATGATGACGATCTATCTCACCGTTCTCCTTCTCAACATGAAAGATGCATG
CAATGAGGGTGACGGTGACAGAAATCTGATTCATCAGAAGATTTTGTTAT
CTGTTTTCAAGTCTACAGATTCCTACAGCAAATATGCCCAAGAGATGTTT
T Coding sequence (CDS) from alignment at scaffold_404:980194..981544 >TCONS_00063999 ID=TCONS_00063999|Name=TCONS_00063999|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_404:980194..981544 (Clytia hemisphaerica)
ATGGGTAAAGCATACATTATAAATGCAGCCTTCCATTTTTTTGGTATGAG
TGATGTAAACGAATATCCTAAATTCCATCCCTTCCCAGAAGAAATACACG
NCATGAGTGATGTAAACGAACATCCTAAATTCCATCCCTTCCCAGAAGAA
ATACACGATTCAAATGAGGTCAAGAAGTCTTACTTTGAAAAGGTAATGGA
AAGTTTCTGTGGTGAATTTGTTTTGCAAAGGAATTTTTACAATGAAGATG
ATCATACTAGAAATTATGGTATGATGACGATCTATCTCACCGTTCTCCTT
CTCAACATGAAAGATGCATGCAATGAGGGTGACGGTGACAGAAATCTGAT
TCATCAGAAGATTTTGTTATCTGTTTTCAAGTCTACAGATTCCTACAGCA
AATATGCCCAAGAGATGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063999-exon-scaffold_404-1491911889:980194..981544 | TCONS_00063999-exon-scaffold_404-1491911889:980194..981544 | Clytia hemisphaerica | exon |
| TCONS_00063999-exon-scaffold_404-1510915933:980194..981544 | TCONS_00063999-exon-scaffold_404-1510915933:980194..981544 | Clytia hemisphaerica | exon |
| TCONS_00063999-exon-scaffold_404-1575043694:980194..981544 | TCONS_00063999-exon-scaffold_404-1575043694:980194..981544 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:980194..981544 . |
Blast
The following BLAST results are available for this feature:
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