TCONS_00063993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063993
Unique NameTCONS_00063993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063993 ID=TCONS_00063993|Name=TCONS_00063993|organism=Clytia hemisphaerica|type=transcript|length=739bp
TACTGATTACATTTTAAAAAGAGACACATAGTATTAGGTTTCATACAAAA
TGAATTCGATATCATCGTCCATCCGAAATCTAAAAGCAGCCATTAAGACA
AACGAGACGACAAAAAAGCGACAGGAGTCAGCCAGGAAGGataatgaaaa
acaaaacgCCCAGGATAAAACCACAAAGTGTCGACAACCGTCTAAAGTGT
ATATGGATCATGTGAAACTAAGGCAGAGTTCGTTTCTGAAAGAGCAGATG
GATCTAGAAGAGCTTTTTGACAAGACACCGTATAAACCGAACTACACAGG
CTGGATAAACAAGTTACAGGAGAAAGAGAATGACGCAAAGAAAAGAGAGA
ACCTAGTTGCAGATATGAAAAAATGGTATAGTAAAGGCCAAACAAGGAAA
TGATGATTAGAAGAAGGGCTGATCCATCACAACTTCGCTATTAATGGTTG
ACCTTTAAGCTAACTGTCCCTGAGGTAACTTTCTCTGAATCCTGTCATGA
TGCAGTGGGGCAATAGTAGTCGGAGATATTGCGAAGACGTTAAGACGTTT
ACTGAGAATGCTGGTGGCCTTCCTTTGCCAACAATGGAAAAACACAGGAA
CTTATCTAAAGCAGGCTGTTCCGAATAGAGTTTCGCCCAAAAATCAGCAA
ATTataatttatattttataaatttgtaagattacatttttaaaaatcgc
aTGTTACAAAGAAATATATTGCAAAGTAATAAAAAGATG
Run BLAST on NCBI

protein sequence of TCONS_00063993-protein

>TCONS_00063993-protein ID=TCONS_00063993-protein|Name=TCONS_00063993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MNSISSSIRNLKAAIKTNETTKKRQESARKDNEKQNAQDKTTKCRQPSKV
YMDHVKLRQSSFLKEQMDLEELFDKTPYKPNYTGWINKLQEKENDAKKRE
NLVADMKKWYSKGQTRK
Run BLAST on NCBI

transcript from alignment at scaffold_404:847708..848446

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063993 ID=TCONS_00063993|Name=TCONS_00063993|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at scaffold_404:847708..848446 (Clytia hemisphaerica)
CATCTTTTTATTACTTTGCAATATATTTCTTTGTAACAtgcgatttttaa
aaatgtaatcttacaaatttataaaatataaattatAATTTGCTGATTTT
TGGGCGAAACTCTATTCGGAACAGCCTGCTTTAGATAAGTTCCTGTGTTT
TTCCATTGTTGGCAAAGGAAGGCCACCAGCATTCTCAGTAAACGTCTTAA
CGTCTTCGCAATATCTCCGACTACTATTGCCCCACTGCATCATGACAGGA
TTCAGAGAAAGTTACCTCAGGGACAGTTAGCTTAAAGGTCAACCATTAAT
AGCGAAGTTGTGATGGATCAGCCCTTCTTCTAATCATCATTTCCTTGTTT
GGCCTTTACTATACCATTTTTTCATATCTGCAACTAGGTTCTCTCTTTTC
TTTGCGTCATTCTCTTTCTCCTGTAACTTGTTTATCCAGCCTGTGTAGTT
CGGTTTATACGGTGTCTTGTCAAAAAGCTCTTCTAGATCCATCTGCTCTT
TCAGAAACGAACTCTGCCTTAGTTTCACATGATCCATATACACTTTAGAC
GGTTGTCGACACTTTGTGGTTTTATCCTGGGcgttttgtttttcattatC
CTTCCTGGCTGACTCCTGTCGCTTTTTTGTCGTCTCGTTTGTCTTAATGG
CTGCTTTTAGATTTCGGATGGACGATGATATCGAATTCATTTTGTATGAA
ACCTAATACTATGTGTCTCTTTTTAAAATGTAATCAGTA

Coding sequence (CDS) from alignment at scaffold_404:847708..848446

>TCONS_00063993 ID=TCONS_00063993|Name=TCONS_00063993|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_404:847708..848446 (Clytia hemisphaerica)
TCATTTCCTTGTTTGGCCTTTACTATACCATTTTTTCATATCTGCAACTA
GGTTCTCTCTTTTCTTTGCGTCATTCTCTTTCTCCTGTAACTTGTTTATC
CAGCCTGTGTAGTTCGGTTTATACGGTGTCTTGTCAAAAAGCTCTTCTAG
ATCCATCTGCTCTTTCAGAAACGAACTCTGCCTTAGTTTCACATGATCCA
TATACACTTTAGACGGTTGTCGACACTTTGTGGTTTTATCCTGGGcgttt
tgtttttcattatCCTTCCTGGCTGACTCCTGTCGCTTTTTTGTCGTCTC
GTTTGTCTTAATGGCTGCTTTTAGATTTCGGATGGACGATGATATCGAAT
TCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040118XLOC_040118Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063993-proteinTCONS_00063993-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063993-exon-scaffold_404-1491911889:847708..848446TCONS_00063993-exon-scaffold_404-1491911889:847708..848446Clytia hemisphaericaexon
TCONS_00063993-exon-scaffold_404-1510915933:847708..848446TCONS_00063993-exon-scaffold_404-1510915933:847708..848446Clytia hemisphaericaexon
TCONS_00063993-exon-scaffold_404-1575043694:847708..848446TCONS_00063993-exon-scaffold_404-1575043694:847708..848446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:847708..848446 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0669391	0	0.0757919	0	184.153	127.473	146.131	151.47	123.816	129.89	69.5138	67.2729	0	0	0.0380103	0	0	0	0.284631	0	0	0	0	0.0697779	0	0	0	0	0	0.302788
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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