|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063972 ID=TCONS_00063972|Name=TCONS_00063972|organism=Clytia hemisphaerica|type=transcript|length=1596bp
CCCAAAttctataagaaaaattttacaaTCTCGAAGTGTTGAAAAATAAA
GAGCAGACAAGCCTCAAAAAAGAATCTTTGGCTCTTGTAACGAAAGACTT
ATACAAACACAGTCTTAGTTCTTGAATATTTACTTTATTAGGATGCAACC
CACAAATTCcaactttaaaaaattatacgcgattttgagaaaaataacaa
taaaaagaagaaaatattaaagcaggaaaaaatattagatttttagccaa
aattagggggtggAGAGATGTAAATAAAGCTGTACTTTCAAACAGAAATA
ACATAAAACCTTTGATAGTGCAAATCTGCCCCTTTCTAACAGAAATTTCA
AACCTTCACACATACAACAATTTTCTTTATTGCTCGCGCTAAAAAGTCGC
TGAAAATCAATAAAGTATACTTCAAAAGCTGAAATCGGATCCATGATTTT
AAAGTATATCTTTTAGTACCTACTATAAGTTAAATTATCCTTTTTTCTTC
CCCTGTAGATAATCAAAAAACAATAGTGGAATTCTTGACAATATTGCATC
ACAATATTAGCATGCTTTCCCCAAAACAACCCAAAATTATGAACAAAGAA
TCTGAAGAGAGtgaaaaaactatttcaaacaCATATTATGAAAAATATAC
TAATTCTCAAGAGAAAAATATTATAGAAGAAAGCAAAGTAGTAATCTTCG
TATATCCACTAACAAGTATAAAATNCAGAAAATATTATAGAAGAAAGCAA
AGAAGTAATCTGCGTATATCCACTAACAAGTATAAAATAATTGGCAGAGG
GAAGTCAAAGTATAAGGGGGTACAAGCGCATGAATTaatgataaagaaaa
tattagcaaaataattatagtcaaaaataaagaatgagaaaagttgaagt
aaaaaaaaaaagaagaaaatattttagtaCCAGCAAATGAGCTAAATTAG
CAACACATGTTAAGTTTTCTTACTCAGGTGACGTAATTTATCAtttaata
ttcaaaatttgaagaaaatcatAAGGGTTGAAATAAtattgaaaaaggaa
aaaaataagggaaaaagtaacaagaaagaagaatatttttccccTTTAGT
TCTTATATACAAAGTTTGAAAAACATAAACAGCAAAAACCAAGAACAAAA
TAGAGAGAAACTTGATCAGTTTTGATTGAAGGAGACTTATATAAAAAATC
ATTCCAGTTATTCCCTTTGTGGCCACAAAATTCAcctccaaaaaaattaa
aatattataGACAGGATTGGTTCAGTCACAGTAATTCAATTTATCCAAAT
ACATTTTTATCCACCACACTACACAGAGATAATCGGATTTCTTTTGTACA
TGAAAATAAAGATTCACAGCAAAACATACTATATGCACTGCTTGGTAAAC
TATAAGAAAAGGCTCACCCATGTCTTAGCTTTACCGCTAATGGGATATGC
GAGCTTTATTTTTCTAGATTTTGcatatgtaaaaaaaaagaagtataTTT
ACTTCATAAGAACACTGAAGTAAATTTTGACATTTAAAGTCAATgctaaa
tttaaagaaaatatctAAAGACTAAATAACCAGATTTCCTTatgtt Run BLAST on NCBI transcript from alignment at scaffold_404:422055..423650 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063972 ID=TCONS_00063972|Name=TCONS_00063972|organism=Clytia hemisphaerica|type=transcript|length=1596bp|location=Sequence derived from alignment at scaffold_404:422055..423650 (Clytia hemisphaerica)
aacatAAGGAAATCTGGTTATTTAGTCTTTagatattttctttaaattta
gcATTGACTTTAAATGTCAAAATTTACTTCAGTGTTCTTATGAAGTAAAt
atacttctttttttttacatatgCAAAATCTAGAAAAATAAAGCTCGCAT
ATCCCATTAGCGGTAAAGCTAAGACATGGGTGAGCCTTTTCTTATAGTTT
ACCAAGCAGTGCATATAGTATGTTTTGCTGTGAATCTTTATTTTCATGTA
CAAAAGAAATCCGATTATCTCTGTGTAGTGTGGTGGATAAAAATGTATTT
GGATAAATTGAATTACTGTGACTGAACCAATCCTGTCtataatattttaa
tttttttggaggTGAATTTTGTGGCCACAAAGGGAATAACTGGAATGATT
TTTTATATAAGTCTCCTTCAATCAAAACTGATCAAGTTTCTCTCTATTTT
GTTCTTGGTTTTTGCTGTTTATGTTTTTCAAACTTTGTATATAAGAACTA
AAggggaaaaatattcttctttcttgttactttttcccttatttttttcc
tttttcaataTTATTTCAACCCTTatgattttcttcaaattttgaatatt
aaaTGATAAATTACGTCACCTGAGTAAGAAAACTTAACATGTGTTGCTAA
TTTAGCTCATTTGCTGGtactaaaatattttcttctttttttttttactt
caacttttctcattctttatttttgactataattattttgctaatatttt
ctttatcattAATTCATGCGCTTGTACCCCCTTATACTTTGACTTCCCTC
TGCCAATTATTTTATACTTGTTAGTGGATATACGCAGATTACTTCTTTGC
TTTCTTCTATAATATTTTCTGNATTTTATACTTGTTAGTGGATATACGAA
GATTACTACTTTGCTTTCTTCTATAATATTTTTCTCTTGAGAATTAGTAT
ATTTTTCATAATATGtgtttgaaatagttttttcaCTCTCTTCAGATTCT
TTGTTCATAATTTTGGGTTGTTTTGGGGAAAGCATGCTAATATTGTGATG
CAATATTGTCAAGAATTCCACTATTGTTTTTTGATTATCTACAGGGGAAG
AAAAAAGGATAATTTAACTTATAGTAGGTACTAAAAGATATACTTTAAAA
TCATGGATCCGATTTCAGCTTTTGAAGTATACTTTATTGATTTTCAGCGA
CTTTTTAGCGCGAGCAATAAAGAAAATTGTTGTATGTGTGAAGGTTTGAA
ATTTCTGTTAGAAAGGGGCAGATTTGCACTATCAAAGGTTTTATGTTATT
TCTGTTTGAAAGTACAGCTTTATTTACATCTCTccaccccctaattttgg
ctaaaaatctaatattttttcctgctttaatattttcttctttttattgt
tatttttctcaaaatcgcgtataattttttaaagttgGAATTTGTGGGTT
GCATCCTAATAAAGTAAATATTCAAGAACTAAGACTGTGTTTGTATAAGT
CTTTCGTTACAAGAGCCAAAGATTCTTTTTTGAGGCTTGTCTGCTCTTTA
TTTTTCAACACTTCGAGAttgtaaaatttttcttatagaaTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063972-exon-scaffold_404-1491911889:422055..423650 | TCONS_00063972-exon-scaffold_404-1491911889:422055..423650 | Clytia hemisphaerica | exon |
| TCONS_00063972-exon-scaffold_404-1510915933:422055..423650 | TCONS_00063972-exon-scaffold_404-1510915933:422055..423650 | Clytia hemisphaerica | exon |
| TCONS_00063972-exon-scaffold_404-1575043694:422055..423650 | TCONS_00063972-exon-scaffold_404-1575043694:422055..423650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:422055..423650 . |
Blast
The following BLAST results are available for this feature:
|
