TCONS_00063971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063971
Unique NameTCONS_00063971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063971 ID=TCONS_00063971|Name=TCONS_00063971|organism=Clytia hemisphaerica|type=transcript|length=336bp
GTGAAATCGAGGACCGACTTAAATCAACTCCACCACAAGACTCTGTTGTA
TCTTGGTTTTTCCGTCTCGAACTTTCGGAGCAAGGCGAGAAAATTGAACA
CtggtttttcaaagaattaTCATCAATGAGAAATACAAAAAGCAATCTAC
TGCAGGATTTGGTCATCTTGCAATCCGTCAactttttaactgatatcaag
aAAAAAAAGCATCAAGAATTTGATCTGTGTCTAATCTCTTGGTCAAGAAA
GCTGATCATTGCCGTTGAAATGAAACGACAGCTTGTCAACTACAAACCAT
TTGAACAATTAGACAAATATCACCAGATATTGGAGG
Run BLAST on NCBI

protein sequence of TCONS_00063971-protein

>TCONS_00063971-protein ID=TCONS_00063971-protein|Name=TCONS_00063971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
EIEDRLKSTPPQDSVVSWFFRLELSEQGEKIEHWFFKELSSMRNTKSNLL
QDLVILQSVNFLTDIKKKKHQEFDLCLISWSRKLIIAVEMKRQLVNYKPF
EQLDKYHQILE
Run BLAST on NCBI

transcript from alignment at scaffold_404:311379..311714

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063971 ID=TCONS_00063971|Name=TCONS_00063971|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at scaffold_404:311379..311714 (Clytia hemisphaerica)
CCTCCAATATCTGGTGATATTTGTCTAATTGTTCAAATGGTTTGTAGTTG
ACAAGCTGTCGTTTCATTTCAACGGCAATGATCAGCTTTCTTGACCAAGA
GATTAGACACAGATCAAATTCTTGATGCTTTTTTTtcttgatatcagtta
aaaagtTGACGGATTGCAAGATGACCAAATCCTGCAGTAGATTGCTTTTT
GTATTTCTCATTGATGAtaattctttgaaaaaccaGTGTTCAATTTTCTC
GCCTTGCTCCGAAAGTTCGAGACGGAAAAACCAAGATACAACAGAGTCTT
GTGGTGGAGTTGATTTAAGTCGGTCCTCGATTTCAC

Coding sequence (CDS) from alignment at scaffold_404:311379..311714

>TCONS_00063971 ID=TCONS_00063971|Name=TCONS_00063971|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_404:311379..311714 (Clytia hemisphaerica)
CTCCAATATCTGGTGATATTTGTCTAATTGTTCAAATGGTTTGTAGTTGA
CAAGCTGTCGTTTCATTTCAACGGCAATGATCAGCTTTCTTGACCAAGAG
ATTAGACACAGATCAAATTCTTGATGCTTTTTTTtcttgatatcagttaa
aaagtTGACGGATTGCAAGATGACCAAATCCTGCAGTAGATTGCTTTTTG
TATTTCTCATTGATGAtaattctttgaaaaaccaGTGTTCAATTTTCTCG
CCTTGCTCCGAAAGTTCGAGACGGAAAAACCAAGATACAACAGAGTCTTG
TGGTGGAGTTGATTTAAGTCGGTCCTCGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040096XLOC_040096Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063971-proteinTCONS_00063971-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063971-exon-scaffold_404-1491911889:311379..311714TCONS_00063971-exon-scaffold_404-1491911889:311379..311714Clytia hemisphaericaexon
TCONS_00063971-exon-scaffold_404-1510915933:311379..311714TCONS_00063971-exon-scaffold_404-1510915933:311379..311714Clytia hemisphaericaexon
TCONS_00063971-exon-scaffold_404-1575043694:311379..311714TCONS_00063971-exon-scaffold_404-1575043694:311379..311714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:311379..311714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.632586	0.309443	0	0	2.87317	3.36229	2.58942	1.45792	1.69811	1.30231	2.41522	2.31529	2.0621	1.70227	0.209706	0.644826	14.8477	7.14704	2.16072	0	1.92177	2.32956	1.1997	3.74745	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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