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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063945 ID=TCONS_00063945|Name=TCONS_00063945|organism=Clytia hemisphaerica|type=transcript|length=3273bpRun BLAST on NCBI protein sequence of TCONS_00063945-protein >TCONS_00063945-protein ID=TCONS_00063945-protein|Name=TCONS_00063945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp MGFKFLEVLKPFISVLPEVSKPERKIQFREKVLWTAITLFIFLVCCQIPLRun BLAST on NCBI transcript from alignment at scaffold_404:554250..575887- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063945 ID=TCONS_00063945|Name=TCONS_00063945|organism=Clytia hemisphaerica|type=transcript|length=21638bp|location=Sequence derived from alignment at scaffold_404:554250..575887- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_404:554250..575887- >TCONS_00063945 ID=TCONS_00063945|Name=TCONS_00063945|organism=Clytia hemisphaerica|type=CDS|length=11400bp|location=Sequence derived from alignment at scaffold_404:554250..575887- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063945 vs. Swiss-Prot (Human)
Match: S61A2 (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3) HSP 1 Score: 854.358 bits (2206), Expect = 0.000e+0 Identity = 420/476 (88.24%), Postives = 453/476 (95.17%), Query Frame = 2
Query: 257 MGFKFLEVLKPFISVLPEVSKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWLRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKILEVGDTPRDRALFNGAQKLFGMIITIGQAIVYVMTGMYGEPSDLGAGVCLLIIIQLFCAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRTDKVRGLREAFYRQNLPNLMNLLATIFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNVYIISQMLSSKFAGNFFVSLLGVWNE--AGGASRSYPIGGLCYYLSPPESLGNIVEDPIHAFMYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKDQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEQGGMGTLLF 1678
MG KFLEV+KPF +VLPE+ KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVI+ASNRGTLMELGISPIVTSGLIMQLLAGAKI+EVGDTP+DRALFNGAQKLFGMIITIGQAIVYVMTGMYG+P+++GAG+CLLIIIQLF AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP T+NTGRGTEFEGAVIALFHLLATRTDKVR LREAFYRQNLPNLMNL+AT+FVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN+Y+ISQMLS +F+GNF V+LLG W + GG +RSYP+GGLCYYLSPPES+G I EDP+H +YI FMLGSCAFFSKTWI+VSGSSAKDVAKQLK+QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADF+GAIGSGTGILLAVTIIYQYFEIFVKEQ+E GGMG L F
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476 HSP 2 Score: 347.821 bits (891), Expect = 1.681e-107 Identity = 166/200 (83.00%), Postives = 183/200 (91.50%), Query Frame = 1
Query: 1963 SSYPIKLFYTSNIPIILQSALVSNVYIISQMLSSKFAGNFFVSLLGVWNEA--GGASRSYPIGGLCYYLSPPESLGNIVEDPIHAFMYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKDQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEQGGMGTLLF 2556
SSYPIKLFYTSNIPIILQSALVSN+Y+ISQMLS +F+GNF V+LLG W + GG +RSYP+GGLCYYLSPPES+G I EDP+H +YI FMLGSCAFFSKTWI+VSGSSAKDVAKQLK+QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADF+GAIGSGTGILLAVTIIYQYFEIFVKEQ+E GGMG L F
Sbjct: 277 SSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476 The following BLAST results are available for this feature:
BLAST of TCONS_00063945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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