TCONS_00063923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063923
Unique NameTCONS_00063923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063923 ID=TCONS_00063923|Name=TCONS_00063923|organism=Clytia hemisphaerica|type=transcript|length=1160bp
TGTGATCGATAACAATGGTTTGGTTCTTATTCATCCAGCGATCAATGGTA
AAAAGTTAGCTCGATTGAATCCTCAACCAAATATGGCGATCGAGGAGTTG
GAATTTGCTGTCCATAATCACAGTCATGTTAAACAGtTACGCGTTCGAAG
GATTGCTGCAACTTATCATTTTTTCAGATCTACCAAAAGTCCTTTCAGCA
CTGGCATCGCATCTCCCAAGTTTGGTTTCTTCGTCCAAAGTCCAAACATC
ACTTTAAAAGAagGTTTGAAGTACCTGAAAAATGTTTCCGACATAATGCA
CTGGCCATTCTGTCCAAAACTTCGACGATTGAAGGATACAAAAACTGTGA
TGGTTCAACGTAttgctgaaaatgaaaacaaaacacaCCTCGACACGTGC
AACCATCGAATGGTACACGGTTTATTGTTGGATGCAAAAGCCACAAGTCA
ATtaccaaaacaatggaaatctAAAAGGGAGAAAATTGAAGAGAATGGGA
TCAATCATATTTTCATTCGAACGCATTGGGGAGTTATACAAAGTATCAAG
AGGAAAAATAATAGcGAACTTATTGACGGTGGCTTTGAGAGCATTTCACG
CGAAAGTTACGATCCTTTTGATTTTTACAAACGAGCCAATCACATTCCAA
ATCGGCTAACCATCTCTTTGATAAAAGGAAGAGGAGAAGATGATCACGTG
ATATCAATTCATAATCCGATTCTTCAAAAGAAAGCAGGTATCACTTTAGC
AGTCACTGGTGTAGAAATGTCTTACGAAAAATTTATGACGActaatttca
ttgaaaaaacaaaagagtTCCCTGATGAACATCTTTATGATGGCAGATTG
ACTTGTGATCGTCATTTGAAGAATCAGGTGGAGGGTTTATATTGTTATCT
GTTGGATGAAAATGGTTTCGTTGTCGCCTCAAACGAAGAAGCAGACATTG
GGTTATTTTTCGGAGAAGTTGATCAAAATGTGATGCGAAAATTGATCGAG
GAAGATAAGTCACACTCCCTCTATCAAGTGGTTACGCTACCAGACTATCA
AGCTTCGTGTAAATTACCGACAAATAATGACAGTAGCGCAGCTGAACTGA
AAAATattttcacttGGATTATTTCTttgttagtttcattacttcaAACC
AGTTTATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_404:121636..132708-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063923 ID=TCONS_00063923|Name=TCONS_00063923|organism=Clytia hemisphaerica|type=transcript|length=11073bp|location=Sequence derived from alignment at scaffold_404:121636..132708- (Clytia hemisphaerica)
TGTGATCGATAACAATGGTTTGGTTCTTATTCATCCAGCGATCAATGGTA
AAAAGGTAAAGTTTACTTGATAACAGCCTTGTTTTATAGTCCCGGTAGAA
CTTTTTTCCTCAGTGGTGGGAATAAAAACTTATTGAAAAATCAATGGGAA
TAGAAATGATATTGTTTCAAGTTTTAAAAATGCAGTGGGAATGGTTTTGG
AGTGCAAGTTTTAATTATTGAATTTCGAATGGGGATAAAATCTAAGTCAA
TTTTCTAGTGGAGCTTAAATTTCAGGGTATTTGCCTACCGGATCCCAAAT
CTTTGCCAAATTTTCCTGTGGGGCTGGGGTCTCAGCAGGTCTGTGAGACA
GGGGTGTTTGATTCAAGCATTTTTATTGTTGGGCCTGAAAAGATGACAAA
GCTAAGGTGACAATTTTAAGTCCTCCTAAGGATTATAGAAGAACTAAAAT
CAAACTTTCCAGCAGGTTGAATTTCTTGAAAAAGAATGACAATAAAAGTT
CCAAAATTCCCCAAATTGCAATTTTTCGCTCATGAATTTCAGACCACCTT
CAAAGCACCTGTAAATATTAATATCGCCAGTATTCTCTGACTAGTAATAT
AGAAATATGTTTCCCTATATCAACACAACAATTTTACACTTTTAGTTTGA
AATTTACAATAAACATCAGGACTTCTTCATGCATAACCAAAGTTTACAGA
GTTGAATATCTCTATAATCAAGATAAAGCTTATTTTTCTTACAGTTAGCT
CGATTGAATCCTCAACCAAATATGGCGATCGAGGAGTTGGAATTTGCTGT
CCATAATCACAGTCATGTTAAACAGGTAATTTAAACGAACGTTCTTCTAC
AGCATGCAATATAATGCACTGTGTCTACAAGCAAACCGTGTGTGGGGCAC
TAAATGACCTTTTAGGGTCTATTTTCAAGGTCAACATAGCATTTCCATTC
ACACACTGGCCATATGATCACATCCACACTGTAGATGTTTTGCCAGGCTG
CGTATACATAGAGAGATCCGTTGAAAAACTTTTTTGCACCACTTTCTAAA
TCTACCTAAACTAGTGTTATAGGTCAGTGATCCGATGAAAACCTAATTCC
AATGGGTTAATTAGTTTTTTCAAATGAAAATCCAGTTGGGATTCTAAAAA
AAAGCGTCTTTTCCATTGGGAATAGGAAGGTCTATAGGCCTAATCAACAG
TTTTACACATGACATCTTTTGAACCCAATAATCCACTGAGGCGGTCCACT
ATTATTTTTTTCAATTTCTGACCAAAATATATTAGGGATAATCATGGAAG
TGTATCAAACATATTCTATTTATCAGTTACACAGGGAAATGATCTTGATG
AATCCAGGTACTCCAAAGCAACTAAAGTTCGATGTTTACATCAAATCAAA
AGATGAGGTTTGTATTAAAAGATTACTCTATCTGCTACAAGAGAATTGGT
CGAAGTTTTACACTGAACACGTGGACAAAATTCTAAACAAGCTGTATAAC
AATCTCCAATAGAACTACCAAAAAAGCCCCGTCGAAAGGACGATGACACC
CCTGTCTCAGTGCCCTGGTAGAACTTTTTCTCTCAGTGGGGATTTCTATC
AAAATACCAATGGGGATAGAAAATCTATTGTTTCCAGCTCGAAAATTCCA
GTGGGGATGGTTTTGGAGTGCAATTTTTTACATTCAGTTTTCAATGGGGA
CAAAACCATAGAGCAATTTCGCAGTGGGGTTGAAATTGTAGGATATTTTT
TCCAAAGGGGAAGATTTTTTGGCCTATTTTTCCACTAGGTCTGTGACACA
GGAACACAGGGGTGTACGATGGGAACACATTTGTGACAATTTGTGAAAAT
CGAAAAGAGGTGCTGTTTAAGGTCGAAAAAAGGGGGGGATTAAGTAATCG
TTTTGTTGATAGTACCGAGAAGTTTTCTTAGCCTTCGTAGGTTGGGGGAC
TAGGTTTGACTTAAAAAAGGCAAAATTACCAAAATAGACCTCTGGCACTT
TTTTTCCCATTCGTGCATCGATTGGGCTTTTTTTCTGACGGTTTAGTACC
TTAAAAGCTACTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGATCGTTATGCTCAATA
TATCATGATTTTGGACAATGCTAAAATCGGGGTCGCCATAAAGAAGTATT
CTACACAATGTTTTGGGATTAAATGGAAACAAGATTATGTCAAGTTGAAG
AAGGCTGTCGAACATCACAAGTCTGTCGTTAGAGTAATCAGAGCAATGCA
TCAGAAAATGTTGCGTTGTTTCTACTGAATTACAGAAGGGGTCAACTGTG
TCTGAACTTACGCTCACGAAGATGACTGAAACCAACCCTTAATCGGTTAA
GGAGAACAACGCCATCGTTGTCACTAGCTCTGAAAACTGAGTTAGCACTG
GGTCTGAGGAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAATAGCTT
GCTTGAAAGACTTAATAGTGGGAAGATTTCGTATATGATCTCCGAGGTTA
TTCCATTCATTTATGCAAAATGGAAAGAAAGAAGCACGATAACGTTCGGT
TCTACAGAAAGGTACCTCAAGTGGTGGTTTTATCCTTCGCCATGCATTGC
GCTCTTCCTCTCCTCTCTGGGAGGAAGAATATTCGTAAGATAAGCAGGAG
CAAAGCCTTTTATGATTTTATAAAAAAATACGAGTCTTCTAATTAATCGC
CTGTCTGCCAGGCTTTCAAAGCCTAACTCAAGGTAAATTTCTTCTCTGGA
AAGCTACTTATTTACAATGCTTGGGTTTGTTGGGAATTTTTTCAATGTAA
AATGATATTTCCACTTGACTATAGTAAATATCAGTTTTGAAAAAACCCTG
TCACAAAATCTGTTCCACTGTTCACCTGACAAAGCACACAAAAAAGATAA
ATGACTTAGAGAAATAATGTGAGAAAGACCTGCTTGTGCAAAAGACAAAG
GATCCTAACTAGAACTTGCTAAAAATCTTATTTCAAAACTATCTTTCGTC
AACTGTAGAAAAAGCCAAGAAACACAGAGTTAAACACAAGACTTTTATAG
TTTTGTTTTTGATTTGAATCAACCCAACATTTGACGTATATTTTAGATCA
ATTTGTTTTTATTTATAATATACGTGCATTTTACAGAGATTGTATACGAT
TTGAAATTTGTTTTTCAGTTACGCGTTCGAAGGATTGCTGCAACTTATCA
TTTTTTCAGATCTACCAAAAGTCCTTTCAGGTAAGGAACGACCTCTATGT
GCAAAAACTTTGACATTTTCTATAACAGGGAATGTTAATCGAAGCCAATC
ATATTCAATCTTCCATCAGTGAATCGAAAATTGATTATTCGAAGTCAATC
TAAGTCTCATAGAAAATCGAATCTAATCAAGCGCAATCGAAACCAGTCAA
CCAAAGCTTATTGGAATCGAATAGATTCTGTTGACTGTGGTTTCGATTGA
GCTTGATTAGATTCGATTAAAAGTAGCGTACCGAGAACGGAGATTTTTTG
TTCGTCGTTAGCGTAAAAGACTTTCCTACGAAACCAAAGTCGATGGAATT
TGATAGAATCTTTTGAAGTATGTCGAAAGAAATGTAAATCATATATCGAA
TTTAATCAATTCAACCAATTACTTCATCACTTATTCGATCTATCTGAAAG
ATTCGATAATCCATTTCTCCGATCTACACCACCTGGTTCTAACGACATAT
TATACAGTATTCAAAAGCTAAATGAAAAGTCTCGCTTTCAGCACTGGCAT
CGCATCTCCCAAGTTTGGTTTCTTCGTCCAAAGTCCAAACATCACTTTAA
AAGAAGGTAATTTCAAAAAAATTTATGAACACAATGACGATTCACAACTC
GATGCATTAACCCAGTACATGCTGTGGGAAATTTTTGTCAAAAGCTAAAG
TCTATTCACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTATCTTTCCAATGATACCAAATTTATAAAGAT
TGAAGAATTCCTTCAAAAGTTATAGGTAAATGAAAAAAGAGTGCACACTT
ATCGTGAATAGACTTTAATTTCCCTGAAATTTCATAATTGGTATTGTTGG
TGTGTATTTAAAATCAAACTAAAACGATCCTTTTTTTGATTTTGAATTCA
CTCACGGTAGTTTTTACCCTTTACGATTTTTCTACCTATAGGTTTGAAGT
ACCTGAAAAATGTTTCCGACATAATGCACTGGTAAATGTATTTCATTTTT
AACTGTTAAAGAATTTAGTATGAGACAAAAAAAAATTTACATGTCAGAAC
TGTTGGCAAAACAGATGGCGAAAACCCTCTCAGATACTTATTTTATCAAA
AACATTTAAAAAGTCTTTTAAGATATTCTAATCATGTAAAATTGTCCAGT
TGGCCCACAACGTTGTTTTGACGTTAATCTAATTTCCATATAATTGAACG
TTCAAAAATGTTGTGTGCATAGATGTACAAATTAAGTTTTTTGACAAACC
TGTATTACTATACAGGTTACACTTCTATTAACGGTCCAAAGAAATGATAT
AAATTTTATCAAAATTTGATATTTGTATTTAGCTCCTACTCTCTAACAGG
GTCATTGAAACAGGGGTTATCACCTCACAGTTCCATCTTTAAATCTTGCC
CTAATCAAATTAATGTAACTGTTTGCATATTACTTTTTGCTCAGGCCATT
CTGTCCAAAACTTCGACGATTGAAGGATACAAAAACTGTGATGGTTCAAC
GTATTGCTGAAAATGAAAACAAAACACACCTCGACACGTGTAAGCCAAAA
CTACCATTTGAAAGAGTAACTATTTGTAATTCAAACGTTTGTAACGTGTC
ATTTTCCTCATAGCACAAAATATTCTACTTTAATGTTCATACTCACTCAG
ACGTTGAAAGAAATAAGGAATGTCGCCCTTTAAAGTGTGTTTTGGTAGAC
ATAAAATTTGAAGGGTCAATTTTTGCCAATTTTCAAAAAGATTGGATCGG
AACAGAAATTTTGTCAGATAAAAAGATAAAAGTGATATATTATACCCTTT
TTGACTTTTAACACAGGCAACCATCGAATGGTACACGGTTTATTGTTGGA
TGCAAAAGCCACAAGTCAATTACCAAAACAATGGAAATCTAAAAGGGAGA
AAATTGAAGAGTAAGATTCCACATTGTAGCTTTTCCCAGGTTATCTACTA
GCAAAGGAGGTTTTTTAGGTAAAATGGTAGAACTGGGATCTACTTTTTAA
GGGGGATTCTTCTGCGTCCTGTTGAAGATCATGGATAGCACAAAACTAAA
ATCTGACCACGTAAGAGCCAGTTCTAGAATACAAAAATTGAGATAGATGT
AAAAATAAATAAGTGCAAATAAATTTACTCTAGTTTGGAGGAGCTGTGAG
AATCATAGTTTAGCTTTAGAAATTTAACCTATGAGGACGGACGGACAGAA
TCTTATCGCGTATGTCTCATTCACGTTATTTTTTAAAGGGGAGAGCACTT
ATCTTTACGTTAAACTTGAAAAGATTACATATATTTATATTCATCTCATC
ATTCTATGTTTGTTATTTATAAATTTGATTGGTTCAGTCTTCATCCAATA
TCCTGGATGATTGCTATGGCTTCTTTTGTTCTCACTGAACGCACGCTGAA
TTAGAATCGCTATCTTCCCTACCAGTGTTTTGTCCATACATTGTGATACT
TACGGTAACACGCCTGTCTCACAGCCCCGGTGAAACTTTTTCCTATAGCG
AGGGTAAAATTTTCTATCGAAAACCCAATTTGGAGAAAAATTCTATTGTT
CCTAAGTGGAAAAATCTTCTTGGGATAGTTCTGGAGTGCAATTTTTTGCA
TTGAATTTTGGATTGGGATGAAATCAAAGCCAATTCGCAGTGAGATTGAA
ATTGTACGGTATTCTTCCACCGGGGACGAAATTTTGGTCAAATTTTCCAG
TGAGGGTGGGGTTCGGCGGGTCTGTGACACAGGGGTGTACGATAGTTCTT
TAATATTCTAGGAATGGGATCAATCATATTTTCATTCGAACGCATTGGGG
AGTTATACAAAGTATCAAGAGGAAAAATAATAGGTAATGAGTACACATTT
TTGTTATTCTTTAAGAATTAGATTATTATCAAGGTTTCCAGATGTGCTTT
TTGTCTCAAACAAAAAATCCTTTGAGATTGAATGATTTTTGAGAGAACTT
TATTAAGGAATAAATTTTGAAGGTAAGAAAGTTTGATGCAAACGAGACCC
CCGTGCCTCAGTGTGATTCTTTACAAGCAAAACTCAAAGCAAATTATCAA
TGAAGAACAATAAAGAACATTGCTGTTTGGCGTTAACCCTTTAAGTGCCA
ATGTCGAGTATAATAAAAAGCCTTTAAAGTTTAAATTAGCGATTTTATTT
AAAAACTTAGAAAAAAAGGACCGTGGAGACTTTAAAGGGTTAAAGTCAGG
TGTGATACTTTCAATTTTTTTAATAGCGAACTTATTGACGGTGGCTTTGA
GAGCATTTCACGCGAAAGTTACGATCCTTTTGATTTTTACAAACGAGCCA
ATCACATTCCAAATCGGCTAACCATCTCTTTGATAAAAGGTAGGATATGA
TAGTTCAAAGCCAGTTTTTGAAAGTCCAACAACGTCCTAAATCACCCTAT
AAAAGTTTTCCATCCTCCCAGTTATTATAACTTATGATAAATATTGCATG
TAGAGTATAGAGATAGACAAAAGTATATCTAGGTCTTCTTTCGGATTAAC
CTCACAAAACCTTATAGAAAACCCCTAGTAGCAGGATCAACTGAAAAAAC
ACATCGCATAGAAGTTCACGTTGTTTTTCAACAACCAATAGGAAGAGGAG
AAGATGATCACGTGATATCAATTCATAATCCGATTCTTCAAAAGAAAGCA
GGTATCACTTTAGCAGGTAATTCATCCGAAAGGAGTCTTTCCCAAAGCTC
TATTCTAAGCACTGCCTTTCGATCACTGCGTTTTATCAACAAACTACGCC
CGTTACTGTGTTTTTGTAGACATTGACAGACATTCAATCATATCCCAGCG
AAAATAAATACGTATCTTTTGATGACAAAAAAAAGAAAATCCTAAACATT
GTCGTTGTTCGATTGATGGTTAGGTTAGAGATTCNAAAAAAAAAGAAAAT
CCTATACACCGTCGTTGCTCGATTGATGGTTAGGTTGAAGATTTGAAATC
TTTTTTAAATTTTCATTCTTTCCAGTCACTGGTGTAGAAATGTCTTACGA
AAAATTTATGACGACTAATTTCATTGAAAAAACAAAAGAGTTCCCTGATG
AACATCTTTATGATGGCAGATTGACTTGTGATCGTCATTTGAAGAATCAG
GTATTGTCACTTCTTCTTTCTTTCTTTAAAGAAACCCCTAGTGGTTTGCG
TGATTTTTTGCTGGCGTGTTGAAGTGGTCTCGATTTTTTGGTGTGCGATG
GTGTGATCAAAATTTTGACAGTATGCGTGAAAGGACAAAGTTTATAAAAT
ATCTCAGGAATCCAAACACAAATCATAGTAAATCAGAGTAAATAGGGGTC
AGAGCTTTTAGATTTTGCCAAAGTTTGCTTATTTGTAGTTTCAAAAATCA
CAAAATGACAAGAAAACCTTTACTAAAGGATCAGACCGTATGTTTTTTTT
GATCGATATTTTTTGACAGGTGGAGGGTTTATATTGTTATCTGTTGGATG
AAAATGGTTTCGTTGTCGCCTCAAACGAAGAAGCAGACGTAAGATTGCTA
ATTTCTTTACAGTGACCAGCTATAAGTAGCAAGAATAGGTTGAAAGGGAG
AACCACAAATCTTTTTTGTAACAACAATTGATCTCCTGACTTTCTTTAAC
AGATTGGGTTATTTTTCGGAGAAGTTGATCAAAATGTGATGCGAAAATTG
ATCGAGGAAGATAAGTCACACTCCCTCTATCAAGTGTAAGAACTGGTCTA
AATTTTCGGGAGACTCTTTTACGGAGTCATTTAATCTTTTTTTCTACCGG
TATGCCGGTATTTGAAAGTGAAATTACCAGTACTCCGTTATTTGAGATGT
CTACTTATTGTATCGCTGTTTACATAAAGATTTACCAGGATTTAAATTAC
CTACCAGTACTTGTATTTCGGCATCAGCATTCCAAAGAAGTCACGAAGAA
ATTTTGAATTTGGATTTCAAAAAAAAACTGTCAGTACCGCTGAATTATTC
CACCGGTAATCCGGTACGTCGCTATTTGGCGATTTCAACAGAGGTTTTTC
CTGTACCGGTATTTTAGAAATTTATTACCAGAATTTTGGTATTTCTACCC
TCAGAAGCTCCCTTCTTTACTTTGTAAGTCTGCTTGCTTCAATTTATAAT
GAGAACAATTTTTACCCAAGAGCTACATATTTCTTAAAAATCTTACTTAT
GCCTGAAAAAAATATTTGTTTTGGATGCATTTTTACTTTGGAGTATGCTT
TACAATATCATTTCAGGGTTACGCTACCAGACTATCAAGCTTCGTGTAAA
TTACCGACAAATAATGACAGTAGCGCAGCTGAACTGAAAAATGTAAGTTT
CTTCTCGTTAAATCTACAAAGATACAACATCTAATCTACTCCAAGCTTGA
AAATAACATAGCTAGAAGAGCATTCAACTCAAAAATCCCTTCTCATATTT
CTCTGGTTATTTCAACTAACCAGGCTGTTGTTTTAACTTTGAAACTGATT
ACAAGCGATGCAAACTGTAATCTGTTAAAATTGGCATAGTGATATTTATT
GATAACAGCATTACCAAGGTTGAAATATTATAATCAATAACAACCATAAA
CAATGGATTTTTTTTCAGATTTTCACTTGGATTATTTCTTTGTTAGTTTC
ATTACTTCAAACCAGTTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040066XLOC_040066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063923-exon-scaffold_404-1575043694:132654..132708TCONS_00063923-exon-scaffold_404-1575043694:132654..132708Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:131884..131964TCONS_00063923-exon-scaffold_404-1575043694:131884..131964Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:128279..128340TCONS_00063923-exon-scaffold_404-1575043694:128279..128340Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:127703..127767TCONS_00063923-exon-scaffold_404-1575043694:127703..127767Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:126278..126317TCONS_00063923-exon-scaffold_404-1575043694:126278..126317Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:125720..125814TCONS_00063923-exon-scaffold_404-1575043694:125720..125814Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:125349..125442TCONS_00063923-exon-scaffold_404-1575043694:125349..125442Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:124426..124497TCONS_00063923-exon-scaffold_404-1575043694:124426..124497Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:123920..124032TCONS_00063923-exon-scaffold_404-1575043694:123920..124032Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:123593..123667TCONS_00063923-exon-scaffold_404-1575043694:123593..123667Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:123159..123283TCONS_00063923-exon-scaffold_404-1575043694:123159..123283Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:122771..122839TCONS_00063923-exon-scaffold_404-1575043694:122771..122839Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:122574..122656TCONS_00063923-exon-scaffold_404-1575043694:122574..122656Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:121967..122042TCONS_00063923-exon-scaffold_404-1575043694:121967..122042Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1575043694:121636..121690TCONS_00063923-exon-scaffold_404-1575043694:121636..121690Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:132654..132708TCONS_00063923-exon-scaffold_404-1510915933:132654..132708Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:131884..131964TCONS_00063923-exon-scaffold_404-1510915933:131884..131964Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:128279..128340TCONS_00063923-exon-scaffold_404-1510915933:128279..128340Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:127703..127767TCONS_00063923-exon-scaffold_404-1510915933:127703..127767Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:126278..126317TCONS_00063923-exon-scaffold_404-1510915933:126278..126317Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:125720..125814TCONS_00063923-exon-scaffold_404-1510915933:125720..125814Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:125349..125442TCONS_00063923-exon-scaffold_404-1510915933:125349..125442Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:124426..124497TCONS_00063923-exon-scaffold_404-1510915933:124426..124497Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:123920..124032TCONS_00063923-exon-scaffold_404-1510915933:123920..124032Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:123593..123667TCONS_00063923-exon-scaffold_404-1510915933:123593..123667Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:123159..123283TCONS_00063923-exon-scaffold_404-1510915933:123159..123283Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:122771..122839TCONS_00063923-exon-scaffold_404-1510915933:122771..122839Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:122574..122656TCONS_00063923-exon-scaffold_404-1510915933:122574..122656Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:121967..122042TCONS_00063923-exon-scaffold_404-1510915933:121967..122042Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1510915933:121636..121690TCONS_00063923-exon-scaffold_404-1510915933:121636..121690Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:132654..132708TCONS_00063923-exon-scaffold_404-1491911889:132654..132708Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:131884..131964TCONS_00063923-exon-scaffold_404-1491911889:131884..131964Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:128279..128340TCONS_00063923-exon-scaffold_404-1491911889:128279..128340Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:127703..127767TCONS_00063923-exon-scaffold_404-1491911889:127703..127767Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:126278..126317TCONS_00063923-exon-scaffold_404-1491911889:126278..126317Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:125720..125814TCONS_00063923-exon-scaffold_404-1491911889:125720..125814Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:125349..125442TCONS_00063923-exon-scaffold_404-1491911889:125349..125442Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:124426..124497TCONS_00063923-exon-scaffold_404-1491911889:124426..124497Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:123920..124032TCONS_00063923-exon-scaffold_404-1491911889:123920..124032Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:123593..123667TCONS_00063923-exon-scaffold_404-1491911889:123593..123667Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:123159..123283TCONS_00063923-exon-scaffold_404-1491911889:123159..123283Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:122771..122839TCONS_00063923-exon-scaffold_404-1491911889:122771..122839Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:122574..122656TCONS_00063923-exon-scaffold_404-1491911889:122574..122656Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:121967..122042TCONS_00063923-exon-scaffold_404-1491911889:121967..122042Clytia hemisphaericaexon
TCONS_00063923-exon-scaffold_404-1491911889:121636..121690TCONS_00063923-exon-scaffold_404-1491911889:121636..121690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:121636..132708 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0373057	0.036379	0	0	0	0	0	0.0898036	0	0.0530538	0.0911171	0	0.0137889	0	0.0359447	0.0158411	0	0.0543381	0.503875	0	0	0	0.446185	0	0.945129	0.758656	0	0.56985	0	0.089909
Blast
[Close]
BLAST of TCONS_00063923 vs. Swiss-Prot (Human)
Match: CA2D3 (Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Homo sapiens GN=CACNA2D3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.203e-22
Identity = 109/436 (25.00%), Postives = 184/436 (42.20%), Query Frame = 2 
Query:    2 VIDNNGLVLIHPAI-----NGKKLARLNPQPNMAIEELE-------------------FAVHNHSHV-KQLRVRRIAATYHFFRSTKSPFSTGIA-SPKFGFFVQSPNITLKEGLKYLK--NVSDIMHWPFC-----PKLRRLKDTKTVMVQRIAENENKTHLDTCNHRMVHGLLLDAKATSQLPKQWKSKREKIEEN---GINHIFIRTHWGV------IQSIKRKNNSELIDGGFESISRESYDPFDFYKRANHIPNRLTISLIKGRG--EDDHVISIHNPI--LQKKAGITLAVTGVEMSYEKFMTTNFIEKTKEFPDEHLYDGR--LTCDRHLKNQVEGLYCYLLDENGFVVASNEEADIGLFFGEVDQNVMRKLIEEDKSHSLYQVVTLPDYQASCKLPTNNDSSAAELKNIFT-------WIISLLVSLL 1144
             I NNG +L HP +      GKK  + N   ++ + E+E                   F++     V K  RV  +   Y++     +PFS G+A S   G +    N+T++EGL  L+  +VS    W +C     P+ R L   + + +      + K  L  C+  ++  +L DA  ++ +   W S      EN   G+   F+ T  G+      + + +  N   L  G  E+I    + P  + + A  IP     S+    G     +V++    I  L ++    +A  G++M  E F    F   +++       DG+  ++CD    N      CYL+D NGF++ S +    G FFGE++  VM KL+    +   ++ +TL DYQA C+    +   A  L + +        WI++ LV  L
Sbjct:  526 AITNNGYILTHPELRLLYEEGKKRRKPN-YSSVDLSEVEWEDRDDVLRNAMVNRKTGKFSMEVKKTVDKGKRVLVMTNDYYYTDIKGTPFSLGVALSRGHGKYFFRGNVTIEEGLHDLEHPDVSLADEWSYCNTDLHPEHRHLSQLEAIKLYL----KGKEPLLQCDKELIQEVLFDAVVSAPIEAYWTSLALNKSENSDKGVEVAFLGTRTGLSRINLFVGAEQLTNQDFLKAGDKENIFNADHFPLWYRRAAEQIPGSFVYSIPFSTGPVNKSNVVTASTSIQLLDERKSPVVAAVGIQMKLE-FFQRKFWTASRQCAS---LDGKCSISCDDETVN------CYLIDNNGFILVSEDYTQTGDFFGEIEGAVMNKLL----TMGSFKRITLYDYQAMCRANKESSDGAHGLLDPYNAFLSAVKWIMTELVLFL 942
The following BLAST results are available for this feature:
BLAST of TCONS_00063923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CA2D32.203e-2225.00Voltage-dependent calcium channel subunit alpha-2/... [more]
back to top