TCONS_00063888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063888
Unique NameTCONS_00063888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063888 ID=TCONS_00063888|Name=TCONS_00063888|organism=Clytia hemisphaerica|type=transcript|length=1282bp
ATCTAGATTTTACAAAGTTGTCGAGCGGTAGAAACTTTTGTTTGGCTCCA
ATCAAAGACGGTTTTCCAATCGAGTGTGGTGTACCACTTGGTTTCTTCAG
TTTATTTACCAAGAGTCCATATCATTTCAGAAGGCTTCCTTTTCAAATTG
CAAGCAAGGCGTCTGTTGCTGTCTACCGTTTGCGCGTTTGCATCCGCTAT
TACTGCACATAGGTTGCTGCAATTTGCTGCTTCTTGCTTGCTAATACAAA
TTTCACTGCAAAGATCTTGCTGCTAATCGCGTATCCCAAAGGCAGCACAT
GGTACTGTTTGAAATGGACGGCCAAAAGAATAATGAGTGTAGAGATTTTT
TAAGAGGTGTCTGTAATCGAGGAAGCTCTTGCAAGTTTTTCCATCCGCCA
GATGCAAATATAATAAAGAAAGAGAACAAGCTTCCTATTTGCAAggactt
tcaaaacaaaggctgcgAGAGAAAAATGTGTAAATTTTTGCATATTTCAC
AACAAGAGGAGGAGGAGTATAATGCTTCTGGTATTCTTCCTGCACATGGC
GGTCGGCCTGACAAAGTGCGATCATTAGGAATTCCTGGCGGTAGAGGAGG
AGGCCCTAGGCCTATGCACCCTCCAGCTTCTGATGCGTGTAAAGATTTTA
TGAACGGTGTTTGCAATCGCGGTAATCGATGTAAATTCAGTCATATTAAT
GAGGAAAGTCCAAATTATGGCAAAAGGAGACGTAACGATTTTGGGGGTCC
AGGTGAGTACATGGGTGGTGGTCAAGGCCAAGGACATCTCGCGGAAGATA
ATGAAATGCTACGACGTAAAATTTCAGATTTGCAAAGACAAGTTATAGAC
TTACGACAAATGAATGACACTCTCTATGAGCAAAATAGCAAATACAGATT
GCAATTGCGAGGAGGTCCAGGAATAGCTCCTCCACCAGCAACAGGCCAGG
GTGCTAACCCTACTTATGGCAGCGGGTCTTTCGCAGGTCCTGCAGCTACA
GGAGGGGGTAATCAATATTCATCGTTTGATGGCTACTCTAAATTTTAGCT
TGAACAATATGATattgtttttgtaaatattgtCTCAATTTCATGCTAAG
ATTTTCATAATTAGAACTTTATGATTTTTACTaggaattttatgttttta
taagagcTAACAAGAAAATTGATTACTTGGTCTCAATTTAATTCCTAATC
TTGATGGACTACCTGCTTTCACTTTTTATGAACCTTaacattcattttta
aattAGCCGTCAGTTAAATTACAAATTGGAAG
Run BLAST on NCBI

protein sequence of TCONS_00063888-protein

>TCONS_00063888-protein ID=TCONS_00063888-protein|Name=TCONS_00063888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MVLFEMDGQKNNECRDFLRGVCNRGSSCKFFHPPDANIIKKENKLPICKD
FQNKGCERKMCKFLHISQQEEEEYNASGILPAHGGRPDKVRSLGIPGGRG
GGPRPMHPPASDACKDFMNGVCNRGNRCKFSHINEESPNYGKRRRNDFGG
PGEYMGGGQGQGHLAEDNEMLRRKISDLQRQVIDLRQMNDTLYEQNSKYR
LQLRGGPGIAPPPATGQGANPTYGSGSFAGPAATGGGNQYSSFDGYSKF
Run BLAST on NCBI

transcript from alignment at scaffold_404:505001..506819+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063888 ID=TCONS_00063888|Name=TCONS_00063888|organism=Clytia hemisphaerica|type=transcript|length=1819bp|location=Sequence derived from alignment at scaffold_404:505001..506819+ (Clytia hemisphaerica)
ATCTAGATTTTACAAAGTTGTCGAGCGGTAGAAACTTTTGTTTGGCTCCA
ATCAAAGACGGTTTTCCAATCGAGTGTGGTGTACCACTTGGTTTCTTCAG
TTTATTTACCAAGAGTCCATATCATTTCAGAAGGCTTCCTTTTCAAATTG
CAAGCAAGGCGTCTGTTGCTGTCTACCGTTTGCGCGTTTGCATCGTAAGT
CCTCCTAAAATCAGCGTTTGCTTAGACTAAAACTAGCGCTTCTGGAATGA
AATATGCTTTTAGGGATGACTACTTAATCGTATTGTTTCTTTCATTTGTA
GTCTTTCTGGTAGCTAGCCAGTTCAATGCTTATTACTTGTACTTCTGCTG
ATCATGAACTTATGGGGTTATTTTCTTCCCAAACTATTAGGTGTTTCTAC
CTTTCCTTTCTAAATGAAAAGCATTCTTCTTtcttaccgtaagttggtct
aatatcaacatccctcgtctaattccgacacccttctctTCTtcagagac
aggaataatatgaaagtttgaatcactgattgaaaaaggattattcctcc
ctaaccctaaccactaagcaaagaaaaaaagcTTTGACCTTTCTTtgaat
ttcagctgataaaaagtgTGTCGGTAGATAGAGGGAtttcgacattagac
caagttacggtagtaGATAAATCGACTTTTAAGTACTGCATTAAGCGTTG
TTTATTGACActcattttgtttcttttacaGCGCTATTACTGCACATAGG
TTGCTGCAATTTGCTGCTTCTTGCTTGCTAATACAAATTTCACTGCAAAG
ATCTTGCTGCTAATCGCGTATCCCAAAGGCAGCACATGGTACTGTTTGAA
ATGGACGGCCAAAAGAATAATGAGTGTAGAGATTTTTTAAGAGGTGTCTG
TAATCGAGGAAGCTCTTGCAAGTTTTTCCATCCGCCAGATGCAAATATAA
TAAAGAAAGAGAACAAGCTTCCTATTTGCAAggactttcaaaacaaaggc
tgcgAGAGAAAAATGTGTAAATTTTTGCATATTTCACAACAAGAGGAGGA
GGAGTATAATGCTTCTGGTATTCTTCCTGCACATGGCGGTCGGCCTGACA
AAGTGCGATCATTAGGAATTCCTGGCGGTAGAGGAGGAGGCCCTAGGCCT
ATGCACCCTCCAGCTTCTGATGCGTGTAAAGATTTTATGAACGGTGTTTG
CAATCGCGGTAATCGATGTAAATTCAGTCATATTAATGAGGAAAGTCCAA
ATTATGGCAAAAGGAGACGTAACGATTTTGGGGGTCCAGGTGAGTACATG
GGTGGTGGTCAAGGCCAAGGACATCTCGCGGAAGATAATGAAATGCTACG
ACGTAAAATTTCAGATTTGCAAAGACAAGTTATAGACTTACGACAAATGA
ATGACACTCTCTATGAGCAAAATAGCAAATACAGATTGCAATTGCGAGGA
GGTCCAGGAATAGCTCCTCCACCAGCAACAGGCCAGGGTGCTAACCCTAC
TTATGGCAGCGGGTCTTTCGCAGGTCCTGCAGCTACAGGAGGGGGTAATC
AATATTCATCGTTTGATGGCTACTCTAAATTTTAGCTTGAACAATATGAT
attgtttttgtaaatattgtCTCAATTTCATGCTAAGATTTTCATAATTA
GAACTTTATGATTTTTACTaggaattttatgtttttataagagcTAACAA
GAAAATTGATTACTTGGTCTCAATTTAATTCCTAATCTTGATGGACTACC
TGCTTTCACTTTTTATGAACCTTaacattcatttttaaattAGCCGTCAG
TTAAATTACAAATTGGAAG

Coding sequence (CDS) from alignment at scaffold_404:505001..506819+

>TCONS_00063888 ID=TCONS_00063888|Name=TCONS_00063888|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_404:505001..506819+ (Clytia hemisphaerica)
ATGGTACTGTTTGAAATGGACGGCCAAAAGAATAATGAGTGTAGAGATTT
TTTAAGAGGTGTCTGTAATCGAGGAAGCTCTTGCAAGTTTTTCCATCCGC
CAGATGCAAATATAATAAAGAAAGAGAACAAGCTTCCTATTTGCAAggac
tttcaaaacaaaggctgcgAGAGAAAAATGTGTAAATTTTTGCATATTTC
ACAACAAGAGGAGGAGGAGTATAATGCTTCTGGTATTCTTCCTGCACATG
GCGGTCGGCCTGACAAAGTGCGATCATTAGGAATTCCTGGCGGTAGAGGA
GGAGGCCCTAGGCCTATGCACCCTCCAGCTTCTGATGCGTGTAAAGATTT
TATGAACGGTGTTTGCAATCGCGGTAATCGATGTAAATTCAGTCATATTA
ATGAGGAAAGTCCAAATTATGGCAAAAGGAGACGTAACGATTTTGGGGGT
CCAGGTGAGTACATGGGTGGTGGTCAAGGCCAAGGACATCTCGCGGAAGA
TAATGAAATGCTACGACGTAAAATTTCAGATTTGCAAAGACAAGTTATAG
ACTTACGACAAATGAATGACACTCTCTATGAGCAAAATAGCAAATACAGA
TTGCAATTGCGAGGAGGTCCAGGAATAGCTCCTCCACCAGCAACAGGCCA
GGGTGCTAACCCTACTTATGGCAGCGGGTCTTTCGCAGGTCCTGCAGCTA
CAGGAGGGGGTAATCAATATTCATCGTTTGATGGCTACTCTAAATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040052XLOC_040052Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063888-proteinTCONS_00063888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063888-exon-scaffold_404-1491911889:505001..505194TCONS_00063888-exon-scaffold_404-1491911889:505001..505194Clytia hemisphaericaexon
TCONS_00063888-exon-scaffold_404-1510915933:505001..505194TCONS_00063888-exon-scaffold_404-1510915933:505001..505194Clytia hemisphaericaexon
TCONS_00063888-exon-scaffold_404-1575043694:505001..505194TCONS_00063888-exon-scaffold_404-1575043694:505001..505194Clytia hemisphaericaexon
TCONS_00063888-exon-scaffold_404-1491911889:505732..506819TCONS_00063888-exon-scaffold_404-1491911889:505732..506819Clytia hemisphaericaexon
TCONS_00063888-exon-scaffold_404-1510915933:505732..506819TCONS_00063888-exon-scaffold_404-1510915933:505732..506819Clytia hemisphaericaexon
TCONS_00063888-exon-scaffold_404-1575043694:505732..506819TCONS_00063888-exon-scaffold_404-1575043694:505732..506819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:505001..506819 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.5645	53.3939	28.6017	28.1655	495.515	383.529	211.525	228.233	241.651	191.991	306.945	320.288	357.291	402.405	281.473	267.408	259.777	272.496	232.292	201.038	220.453	210.973	193.685	184.188	188.857	226.086	192.185	222.524	129.729	135.501
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
[Close]
BLAST of TCONS_00063888 vs. Swiss-Prot (Human)
Match: ZC3HA (Zinc finger CCCH domain-containing protein 10 OS=Homo sapiens GN=ZC3H10 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.195e-17
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 2 
Query:  338 CRDFLRGVCNRGSSCKFFHP---PDANIIKKENKLPICKDFQNKGCERKMCKFLHISQQEEEEYNASGILPAHGGRPDKVRSLGIXXXXXXXXXXXXXXASDACKDFMNGVCNRGNRCKFSHINEE 706
            CRDFLR VC RG  C++ HP     +N+   +N+   C DFQNK C R  C+F+H S+++E+ Y  +G LP    R      LG+        +         C+DF+ G C RG +CKF H+  +
Sbjct:   42 CRDFLRNVCKRGKRCRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSKEDEDGYKKTGELPPR-LRQKVAAGLGLSPADLPNGKEEV----PICRDFLKGDCQRGAKCKFRHLQRD 162
The following BLAST results are available for this feature:
BLAST of TCONS_00063888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZC3HA4.195e-1736.51Zinc finger CCCH domain-containing protein 10 OS=H... [more]
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