TCONS_00063855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063855
Unique NameTCONS_00063855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063855 ID=TCONS_00063855|Name=TCONS_00063855|organism=Clytia hemisphaerica|type=transcript|length=679bp
ggccGCCGTACCTGCCGTATCCGTTGCGTCGTGTTCTGACTCTCCTTCAA
GGTTTTCGAATAATTTTAATGCTAATTATGGATAATAATTCTTCTCGGGT
GATTTAACGCACGTCTTCCCTTTTTCTTGTAGTTTCATCGCTATCCAACC
AGTGTGTCGTCATTGTCCTTTTCAAATGATGGAAGCTTATTGGCCATTGC
TGTTTCTTATCTTAATGAAGAAGGAGATAAAGAacaTCCAGATGATGCTA
TTTACATTCGACAAGTTGCAGATGCAGAAACCAAACCGAAATGATGAGCT
AATATAATAGGTGTGCGTTTAGCTGTTACAAACTCCTTGGCTGCCTTCTG
GAGTGACCCGAAGACCGGCTCCTTGACAAGGTTAATCACCATGAATAATA
AAGATTCGAGGACTTATGAAGAGCGTACAAACGTAAATGTTTTGTTGGGT
TTTAATTTATGATGCATGATGTCGAGAATAGTCAGATCACTAATATGATT
TAAATTGGGTTGAAAAAGACCCGATAGCgataatttttcttgaaatttta
ccTATAATTTGTAAACAATTGTACATATTGGttgcattgggctcttccag
aaaaaatccgttcatggggggtggaggatgaattgtccaggggtattgaa
aaaataccaaaaaatcgCAATGTCCAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_404:71808..73476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063855 ID=TCONS_00063855|Name=TCONS_00063855|organism=Clytia hemisphaerica|type=transcript|length=1669bp|location=Sequence derived from alignment at scaffold_404:71808..73476+ (Clytia hemisphaerica)
ggccGCCGTACCTGCCGTATCCGTTGCGTCGTGTTCTGACTCTCCTTCAA
GGTTTTCGAATAATTTTAATGCTAATTATGGATAATAATTCTTCTCGGGT
GATTTAACGCACGTCTTCCCTTTTTCTTGTAGTTTCATCGCTATCCAACC
AGTGTGTCGTCATTGTCCTTTTCAAATGATGGAAGCTTATTGGCCATTGC
TGTTTCTTATCTTAATGAAGAAGGAGATAAAGAGTaagtttttaagctat
tttttatttcataccAACGACATCAAATAATACCCTCTTAGataaacttg
taaaaaattgtTAACCGCAGCTTGACTAGAATAGTGTCTTCTTAGTGAAT
TTGACATTCTAATTTCTACctTAAGCTTGAAAACAGTCTATGCTAGAATG
TTTTTTTCATCGATGGTTTTTTCGGATCTCTTAAGATGCTTAGCCAAATG
AATGTTTCGTATTACTATGTAAAAATTATTGTGTGTTGGCGGCCGCCTAC
TTTAGGCGTGCAAAATTTCGcgagaagaaactttcgcgaggtcgaaaaat
cgccaAATTTACGACATTTGCTTTCCCGATATTTTTCGCTAGCTAAAACT
TCCGCTGATCGTTGgatgaaaatgagaatttttaaaataagaaccaatac
aaACAGTTGttcttcgactttaaaaaggcgtcaaaagctaaaaatatgct
gaaaattttgtatttattacgatttcgaagttttataatttttttaaaga
ttttttcgcgagcataaactttcgcgaattaccCTGCTACCCAAAATTCG
CAAAAGTTGCGAAattttctgctcgcgaaagtttgtacgcctaaagctCA
AAAAAGCGGTTTGATATCCATCGGAGAGCAATGAAAATCACCTTTTGATG
AGCCAACACATTATTTGAATTCAACTGTCCTtttagactatgttatagtc
taagacgaatcactatctaagaaaaaagcccaaagccgaagaaaattcgc
aaacgagtttttttgccgaaaagagtttacagtcggtagtgCCAGTTttt
tcgaaactctcccgccgattttttcccgtataccgccaaaacgccatacc
gccatttttcccgcctttactatcactgtaacggacgataacatcgtcta
ctgTCCTTTACGTTCCGAGTCAAAAAACGTTTAGCTCgaagaaaatttta
gatttgatatttttcttttcaagacaTCCAGATGATGCTATTTACATTCG
ACAAGTTGCAGATGCAGAAACCAAACCGAAATGATGAGCTAATATAATAG
GTGTGCGTTTAGCTGTTACAAACTCCTTGGCTGCCTTCTGGAGTGACCCG
AAGACCGGCTCCTTGACAAGGTTAATCACCATGAATAATAAAGATTCGAG
GACTTATGAAGAGCGTACAAACGTAAATGTTTTGTTGGGTTTTAATTTAT
GATGCATGATGTCGAGAATAGTCAGATCACTAATATGATTTAAATTGGGT
TGAAAAAGACCCGATAGCgataatttttcttgaaattttaccTATAATTT
GTAAACAATTGTACATATTGGttgcattgggctcttccagaaaaaatccg
ttcatggggggtggaggatgaattgtccaggggtattgaaaaaataccaa
aaaatcgCAATGTCCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040039XLOC_040039Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063855-exon-scaffold_404-1491911889:71808..72040TCONS_00063855-exon-scaffold_404-1491911889:71808..72040Clytia hemisphaericaexon
TCONS_00063855-exon-scaffold_404-1510915933:71808..72040TCONS_00063855-exon-scaffold_404-1510915933:71808..72040Clytia hemisphaericaexon
TCONS_00063855-exon-scaffold_404-1575043694:71808..72040TCONS_00063855-exon-scaffold_404-1575043694:71808..72040Clytia hemisphaericaexon
TCONS_00063855-exon-scaffold_404-1491911889:73031..73476TCONS_00063855-exon-scaffold_404-1491911889:73031..73476Clytia hemisphaericaexon
TCONS_00063855-exon-scaffold_404-1510915933:73031..73476TCONS_00063855-exon-scaffold_404-1510915933:73031..73476Clytia hemisphaericaexon
TCONS_00063855-exon-scaffold_404-1575043694:73031..73476TCONS_00063855-exon-scaffold_404-1575043694:73031..73476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:71808..73476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.6454	65.5975	102.551	109	64.4966	56.1231	49.9204	56.2151	45.6208	51.4849	55.9034	53.5589	40.4744	40.4138	43.6684	47.8715	44.8678	51.8619	21.269	20.2182	36.9137	34.7669	52.1683	43.0966	61.3436	60.1447	30.0505	20.6311	31.34	29.3018
Blast
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BLAST of TCONS_00063855 vs. Swiss-Prot (Human)
Match: BUB3 (Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.524e-19
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  133 FHRYPTSVSSLSFSNDGSLLAIAVSYLNEEGDKEHPDDAIYIRQVADAETKPK 291
            FHRYPTS++SL+FSNDG+ LAIA SY+ E  D EHP+D I+IRQV DAETKPK
Sbjct:  272 FHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETKPK 324
The following BLAST results are available for this feature:
BLAST of TCONS_00063855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BUB31.524e-1971.70Mitotic checkpoint protein BUB3 OS=Homo sapiens GN... [more]
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