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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063849 ID=TCONS_00063849|Name=TCONS_00063849|organism=Clytia hemisphaerica|type=transcript|length=3529bpRun BLAST on NCBI protein sequence of TCONS_00063849-protein >TCONS_00063849-protein ID=TCONS_00063849-protein|Name=TCONS_00063849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp MADNGKLLKEVSGVVKFKKNEGTLKLYANRLVWTPNKSGDKNFQCQFSDIRun BLAST on NCBI transcript from alignment at scaffold_404:9281..45950+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063849 ID=TCONS_00063849|Name=TCONS_00063849|organism=Clytia hemisphaerica|type=transcript|length=36670bp|location=Sequence derived from alignment at scaffold_404:9281..45950+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_404:9281..45950+ >TCONS_00063849 ID=TCONS_00063849|Name=TCONS_00063849|organism=Clytia hemisphaerica|type=CDS|length=25200bp|location=Sequence derived from alignment at scaffold_404:9281..45950+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00063849 vs. Swiss-Prot (Human)
Match: TF2H1 (General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1) HSP 1 Score: 358.992 bits (920), Expect = 4.191e-110 Identity = 202/540 (37.41%), Postives = 313/540 (57.96%), Query Frame = 2
Query: 1829 VKFKKNEGTLKLYANRLVWTPNKSGDKNFQCQFSDIKVQRISPDTSSKVQLQIVFHNDSAYNFQFANSSGRQVQVKERDEIKEILAELIPQHRQMANKDLEEKNRIFKEKPELYQLYKDLVVSQIITSEEFWESQKLKMKKQCSNT--EEQEVGIASGFLAELKPDMHGCNELRFNLTADNINAIFKMYPGVKKRYVQTVPSEVTEKEFWSEFFQSQYFHRDRIQKSTSSKDVFGDLAKKDEEAQLKELRESFFDPLINFTSASPNS-QEGYG-----SGFRQKTIGE----SLLKQFNNQSLLVLQNTLKRK--TNDELS-----------------TVKQKRIRDALELEDLESKEQQATTSLNILDTDKFSHKGPDDEDXXXXXXXXXXXXXXMESFKHNVLTWVPNLPKAMTLDECRRMAVDLSPGGRLIQNHSSKSYSENVSKDMVQETKKNYMAVAELLRHFWCCFPIKSPQLEEKVRRMATSIEKYRDTKLANF---INMQPASCDQLGTHLARMIEEALKKFRTWEEKRTAK 3346
V+ KK +G L L A R+ W P ++DIK Q+ISP+ +K+QLQ+V H NF F+N S VKERD +K++L +L+P+ ++ ANK+LEEKNR+ +E P L+QLYKDLVVSQ+I++EEFW ++ S+T +Q+VGI++ FLA+++P GCN LR+NLT+D I +IF+ YP VK +Y + VP +TEKEFW+ FFQS YFHRDR+ +T SKD+F + AK DE+ + +PL++ T+ EGYG S K+I E +++K+FN+ S +VL L+++ N++ S VK+ ++++++E EDL T +LN+ +D++ H GP + + +S + + + P L + ++ LSPGG L+Q + ++ ++ V D+ E K Y+AV ELLRHFW CFP+ +P LEEKV +M +++E+++ TKL F I Q S + L +H+ M++ A K TW+ +R K
Sbjct: 15 VRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNES---TAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDGCNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRL--NTGSKDLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSNAAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEYEDLGKNNSVKTIALNLKKSDRYYH-GP-TPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQVLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFPVNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTN-LVSHIEEMLQTAYNKLHTWQSRRLMK 546 The following BLAST results are available for this feature:
BLAST of TCONS_00063849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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