TCONS_00063849-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063849-protein
Unique NameTCONS_00063849-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063849-protein ID=TCONS_00063849-protein|Name=TCONS_00063849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp
MADNGKLLKEVSGVVKFKKNEGTLKLYANRLVWTPNKSGDKNFQCQFSDI
KVQRISPDTSSKVQLQIVFHNDSAYNFQFANSSGRQVQVKERDEIKEILA
ELIPQHRQMANKDLEEKNRIFKEKPELYQLYKDLVVSQIITSEEFWESQK
LKMKKQCSNTEEQEVGIASGFLAELKPDMHGCNELRFNLTADNINAIFKM
YPGVKKRYVQTVPSEVTEKEFWSEFFQSQYFHRDRIQKSTSSKDVFGDLA
KKDEEAQLKELRESFFDPLINFTSASPNSQEGYGSGFRQKTIGESLLKQF
NNQSLLVLQNTLKRKTNDELSTVKQKRIRDALELEDLESKEQQATTSLNI
LDTDKFSHKGPDDEDNGHTNGNGTNTQQNMESFKHNVLTWVPNLPKAMTL
DECRRMAVDLSPGGRLIQNHSSKSYSENVSKDMVQETKKNYMAVAELLRH
FWCCFPIKSPQLEEKVRRMATSIEKYRDTKLANFINMQPASCDQLGTHLA
RMIEEALKKFRTWEEKRTAKNIKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040037XLOC_040037Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063849TCONS_00063849Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD_dom
IPR011993PH_dom-like
IPR013876TFIIH_BTF_p62_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005607BSD domainSMARTSM00751wurzfinal6coord: 102..155
e-value: 0.038
score: 19.2
coord: 181..233
e-value: 4.0E-10
score: 49.6
IPR005607BSD domainPFAMPF03909BSDcoord: 182..237
e-value: 1.4E-12
score: 47.3
IPR005607BSD domainGENE3D1.10.3970.10coord: 154..244
e-value: 1.8E-10
score: 40.8
IPR005607BSD domainPROSITEPS50858BSDcoord: 181..233
score: 14.022
IPR005607BSD domainPROSITEPS50858BSDcoord: 115..146
score: 9.979
IPR005607BSD domainSUPERFAMILY140383BSD domain-likecoord: 108..149
IPR005607BSD domainSUPERFAMILY140383BSD domain-likecoord: 185..235
IPR011993PH domain-likeGENE3D2.30.29.30coord: 12..108
e-value: 5.6E-25
score: 87.2
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 13..109
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 16..99
e-value: 7.8E-22
score: 77.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..378
NoneNo IPR availableCDDcd13229PH_TFIIHcoord: 11..104
e-value: 3.08116E-27
score: 104.276

Blast
BLAST of TCONS_00063849-protein vs. Swiss-Prot (Human)
Match: TF2H1 (General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 1.213e-118
Identity = 202/540 (37.41%), Postives = 314/540 (58.15%), Query Frame = 0
Query:   15 VKFKKNEGTLKLYANRLVWTPNKSGDKNFQCQFSDIKVQRISPDTSSKVQLQIVFHNDSAYNFQFANSSGRQVQVKERDEIKEILAELIPQHRQMANKDLEEKNRIFKEKPELYQLYKDLVVSQIITSEEFWESQKLKMKKQCSNT--EEQEVGIASGFLAELKPDMHGCNELRFNLTADNINAIFKMYPGVKKRYVQTVPSEVTEKEFWSEFFQSQYFHRDRIQKSTSSKDVFGDLAKKDEEAQLKELRESFFDPLINFTSASPNS-QEGYG-----SGFRQKTIGE----SLLKQFNNQSLLVLQNTLKRK--TNDELS-----------------TVKQKRIRDALELEDLESKEQQATTSLNILDTDKFSHKGPDDEDNGHTNGNGTNTQQNMESFKHNVLTWVPNLPKAMTLDECRRMAVDLSPGGRLIQNHSSKSYSENVSKDMVQETKKNYMAVAELLRHFWCCFPIKSPQLEEKVRRMATSIEKYRDTKLANF---INMQPASCDQLGTHLARMIEEALKKFRTWEEKRTAK 520
            V+ KK +G L L A R+ W P           ++DIK Q+ISP+  +K+QLQ+V H     NF F+N S     VKERD +K++L +L+P+ ++ ANK+LEEKNR+ +E P L+QLYKDLVVSQ+I++EEFW ++        S+T   +Q+VGI++ FLA+++P   GCN LR+NLT+D I +IF+ YP VK +Y + VP  +TEKEFW+ FFQS YFHRDR+  +T SKD+F + AK DE+     +     +PL++ T+       EGYG     S    K+I E    +++K+FN+ S +VL   L+++   N++ S                  VK+ ++++++E EDL       T +LN+  +D++ H GP    +        +   + +S +  +  + P L + ++          LSPGG L+Q  + ++ ++ V  D+  E K  Y+AV ELLRHFW CFP+ +P LEEKV +M +++E+++ TKL  F   I  Q  S + L +H+  M++ A  K  TW+ +R  K
Sbjct:   15 VRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNES---TAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDGCNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRL--NTGSKDLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSNAAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEYEDLGKNNSVKTIALNLKKSDRYYH-GPTPIQSLQY-ATSQDIINSFQSIRQEMEAYTPKLTQVLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFPVNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTN-LVSHIEEMLQTAYNKLHTWQSRRLMK 546          
The following BLAST results are available for this feature:
BLAST of TCONS_00063849-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2H11.213e-11837.41General transcription factor IIH subunit 1 OS=Homo... [more]
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