TCONS_00063829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063829
Unique NameTCONS_00063829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063829 ID=TCONS_00063829|Name=TCONS_00063829|organism=Clytia hemisphaerica|type=transcript|length=849bp
GCGATAATGATACTCgccgtttttgcatttttgtgaaTTCGGTCGCTTGC
TGAACAGAACATATGTCGGATATTAAATCGATCTTAAACACTAtcataaa
attgttttaaagttcggaaaaagcaaaattgttttttgctttttttttaa
ttttttgctaaTTGGTATAAGCGATAATGATGatcgccgtttttgcattt
ATGTGAATTCGGTCGCTTGCCCAGCAAAAAAATACATAACATTTTATTAA
GTATACTTTTATTAAGTATTTGATTTTAGGATGGCATAACGTGGCTCTGA
GTTTTTTTCTCACTCAGTTCAATTTTATATGAGCAACCAAATTCTTTAGG
GTGtgtgagtttttttatcagagTCGGATATCCTTACCGAAAAGAGGATA
TCCAATCTTCGGTACTAGTCCCAGAGTAGGGTGGTTCATTTTGNCGAAAA
GAGGATATCCCATCTTCGGTACTAGTCCCAGAGTAGGGTGGTTCATTTTG
GCCGGACTATCAAACACTTAACCTAACTGGTCTTTTCAATATCTGAATAT
TTCAAATGTAATTTATTCCAAGAATCTTTTAATAAAAGCCCCAAatgtaa
gtttttttctttcaaaacgtCTCACTAGACTCCATGGCCTTTTTTTATTA
CAGTAAAGTGCGTAGTCTGTATGGGGTTATTTGTAACAGTCGCTATTGAT
TCACCTTCTGTTAGGTTAAGTTGGTAGCGATAGACGAACGGTGCGGGTTG
TGGGGCCTACCCTACTCTTTAACTTAGAGGaaaaaatttgttaaatttgg
attcagATTCAATTTTAAGTTATCACTGAAACTTTTTAACTTCAACTCG
Run BLAST on NCBI

transcript from alignment at scaffold_402:28040..28888

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063829 ID=TCONS_00063829|Name=TCONS_00063829|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at scaffold_402:28040..28888 (Clytia hemisphaerica)
CGAGTTGAAGTTAAAAAGTTTCAGTGATAACTTAAAATTGAATctgaatc
caaatttaacaaattttttCCTCTAAGTTAAAGAGTAGGGTAGGCCCCAC
AACCCGCACCGTTCGTCTATCGCTACCAACTTAACCTAACAGAAGGTGAA
TCAATAGCGACTGTTACAAATAACCCCATACAGACTACGCACTTTACTGT
AATAAAAAAAGGCCATGGAGTCTAGTGAGacgttttgaaagaaaaaaact
tacatTTGGGGCTTTTATTAAAAGATTCTTGGAATAAATTACATTTGAAA
TATTCAGATATTGAAAAGACCAGTTAGGTTAAGTGTTTGATAGTCCGGCC
AAAATGAACCACCCTACTCTGGGACTAGTACCGAAGATGGGATATCCTCT
TTTCGNCAAAATGAACCACCCTACTCTGGGACTAGTACCGAAGATTGGAT
ATCCTCTTTTCGGTAAGGATATCCGActctgataaaaaaactcacaCACC
CTAAAGAATTTGGTTGCTCATATAAAATTGAACTGAGTGAGAAAAAAACT
CAGAGCCACGTTATGCCATCCTAAAATCAAATACTTAATAAAAGTATACT
TAATAAAATGTTATGTATTTTTTTGCTGGGCAAGCGACCGAATTCACATa
aatgcaaaaacggcgatCATCATTATCGCTTATACCAAttagcaaaaaat
taaaaaaaaagcaaaaaacaattttgctttttccgaactttaaaacaatt
ttatgaTAGTGTTTAAGATCGATTTAATATCCGACATATGTTCTGTTCAG
CAAGCGACCGAAttcacaaaaatgcaaaaacggcGAGTATCATTATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040019XLOC_040019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063829-exon-scaffold_402-1491911889:28040..28888TCONS_00063829-exon-scaffold_402-1491911889:28040..28888Clytia hemisphaericaexon
TCONS_00063829-exon-scaffold_402-1510915933:28040..28888TCONS_00063829-exon-scaffold_402-1510915933:28040..28888Clytia hemisphaericaexon
TCONS_00063829-exon-scaffold_402-1575043694:28040..28888TCONS_00063829-exon-scaffold_402-1575043694:28040..28888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_402supercontigscaffold_402:28040..28888 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283495	0.16785	0.16705	0	2.63932	2.28312	1.86386	2.35969	1.64856	1.4253	1.50222	1.28181	1.36839	1.41754	1.48952	0.948522	0.841606	1.21545	1.36653	0.996735	2.51935	1.67018	0.992392	0.96984	5.91505	7.35947	0.43057	1.0302	0	0.108643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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