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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063822 ID=TCONS_00063822|Name=TCONS_00063822|organism=Clytia hemisphaerica|type=transcript|length=670bp
GTTCCACTCACCCTGAAATGCATTATAAAGGTATAATTGTGAGGGGGGCC
TAGACAAATTTTCCAGAAATTAGCTTGAAATGCTCTGTAACCTTAGCCCT
GAAGTGAAAAAtagagttgcttataaaaaaaatgtgtaggcGCTTTATGA
CCTCTCcctttttggcgccccttttgAAAAACCTCAACTTCCCTCAgacg
tattttttttaatttttagattcatTTGGCACTTTGACAATGCCAAATTT
CCAACCTATGAGGAGCTATTCTTGTATGAAGATAACGAGGAAGTGAATGC
TCTAATCGACAATTTCGAATTGAACttggTTAACCATTTGGCACAACTGT
ACTCTGTCGCCGACAACGATACAGAATACAGTCTCATTGAAGAAAAGGTG
CTGGTTGTCGAACCCAAAGTTAAGGAGTACGGACTGACAACCGAAGCAAA
CAAAACTTTTGGCGCCTTCCATAATGAAGTTAGGGAGGTGATGATGAAAT
AtgaagatattcaatttcttactGGAAATTACGGGAAAGCGAAGGCGTTG
GTGCTGAGATTGTCAGCTGTTGTCCAAAATTTGTTATGGTTTGTCAATAA
ATTGGATGACAAAGATGCGACAATGAAGGAAAGCGATACAACATCTGAAA
AAGACGACGCGGAAGAAGGT Run BLAST on NCBI transcript from alignment at scaffold_401:35074..41590+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063822 ID=TCONS_00063822|Name=TCONS_00063822|organism=Clytia hemisphaerica|type=transcript|length=6517bp|location=Sequence derived from alignment at scaffold_401:35074..41590+ (Clytia hemisphaerica)
GTTCCACTCACCCTGAAATGCATTATAAAGGTATAATTGTGAGGGGGGCC
TAGACAAATTTTCCAGAAATTAGCTTGAAATGCTCTGTAACCTTAGCCCT
GAAGTGAAAAAtagagttgcttataaaaaaaatgtgtaggcGCTTTATGA
CCTCTCcctttttggcgccccttttgAAAAACCTCAACTTCCCTCAgacg
tattttttttaatttttagattcatTTGGCACTTTGACAATGCCAAATTT
CCAACCTATGAGGAGCTATTCTTGTATGAAGATAACGAGGAAGTGAATGC
TCTAATCGACAATTTCGAATTGAACttgggtttgtttttttatctaacTA
AAAATATAGTTAACATGTGTTTTCTATTACTTCAATCCTTTTCGAATCTA
TACTTGGAGATATTgcaagaaaaattgatgaaCAAGAACTTCGGTAAGGT
CAAATAAAAGGGAGAATTCTCTGTTCCATAATAATTGGCAGTGGGCGAAg
gatttttacaatttatttaCGGGCATTGTCAACTTAAGaggttaaaataa
aataatgaaaaaacaaGAGTAACAACatgaattttcttattttttgccaA
TATTTCTTAGTGTCGAAGAAATAACTATAAGCCCTCAAAACTTCAAAGAT
ActaaaaaaacaggaaaaactATATTTGAAACATCGTATTTTTTTCTTGC
CCTCACTTACTTTTCCTGTTAAATTCGGGGTAGACTCTCCTCGTTCACAT
TTCTTAGTTTTTCTCGGGAAATTAATCCCGAATTTTTTTCCGTCATAACC
ATAATACCACCCGAAACTCTAAACTTTGGAAACCAAATTAAACTAGAAAT
ACTTGATATTTTTAGTTAACCATTTGGCACAACTGTACTCTGTCGCCGAC
AACGATACAGAATACAGTCTCATTGAAGAAAAGGTGCTGGTTGTCGAACC
CAAAGTTAAGGAGTACGGACTGACAACCGAAGCAAACAAAACTTTTGGCG
CCTTCCATAATGAAGTTAGGGAGGTGATGATGAAATAtgaagatattcaa
tttcttactGGTAAGATTAAACCAGAAATTTAGGAAAGGGAGATAGGAAT
Cgttctactttaatgggataagatttcgcggggattaaatttcgtggatt
tcgcggattttggcCCTATCCACGAAaataaatccccgcgaaaattttga
aaaatgtctccGGTGAATGTcacttttgattgaataatcacttgtggttc
ttCAAATAAACCCAAATTTGGAGCAATCCATCCAAAAAGTAAAATCGCAA
ATTTACCAGCTAGGAACTTGACAAGCCTGTTAAATCTAATTCTCAACCAT
GTAATATTTCTGTTATTTTTATCCGTATCATTGCGAATTGAATAGAATAT
ACAAGGCTGGGAACTGACAAGCCTGTTAAATTTAAAATCTCAACCATGTA
ATATTTCTGTTATTCTTATCTCTCTCATGGTGATTTGAAGAAATCACAAG
GCTGGGTATTCGGAAACTTTCCGAGCCTCTTAAATCTAAATTCCGGACCC
TAAAATATACCCCCAATATACCACTGACATTATTTTATCTAcattggaaa
tcaaaaaaatcacaagGTTAGGAAAGTTTCGAAATTCACATGCCTGTGaa
atcagagatttgggaaaggAAGATAGGTATCGGCGTATTCATGTATAGAA
ATATGTGCTGTTATagtcttttgtttcttttgaaatcattgaagTATAAC
TACATAACAACCTTTTCTGCCAATCAGAGTAAGGAATTATAAAACCTCTT
TGCCAAATCTTTTGAGCCCGTGCCAAGAAAAACTGACTCTATCAACAGAA
TCCTGGTAATATTTTCTACCTGGACAAATTTACATTTGACTTCCAAAAAT
TCTTGCTGCTAAGATATTCGTAAATTTAGTTTTTAGTCCTTGCGACAGAG
TGCAGAGTTTCATTCacataaaaaaactttcattcaAATCTGAAAAGACT
TCCTTTGTTAAATAGAGTATTCCCATATGAATACTACTTCATCGTTGTGt
ttcaaataatcaaaattgaaataaaaatgtcttttAATGATCTTTTTATA
GTCGTTTCACGTACATATAGTTGAACAGCACCTCCCCAGGGGCGGATGAA
GACTATATGAAAGTTATGAATtcatatggtcagattttcttgaataacat
atttctttacattacacgttttcaaaataatcaattttaCCAACAGTCTC
TCAGGAAATTCCGTCTCTCATCAGAAATCAGAGCGAGAGAGATATTGAGC
GCTCAAAACTTGCGCGAGCGGCGGGCACGCACAATCGCGCGCGTCGTTAG
TGCGTTTCGCCAAAATGGTAGCGTGCACTCTGCTTTCAAAGATTTCGCTC
TGTGGATGTTTACAGCTCTCGGCTCTTTGCCGTTGGTACTTTCTCTCGAA
ACTGTTTGTTTTTATCTGAAGTCTGTTTACAAAATACTGAAGGAGGAGTT
TGCATTCGTGATTTCTCAACttgatttgcatacttttcacGAATTGTAAT
CTTTTTTTACGATGAAAGAGGCTTTTCATGCATGAGGAATTTCGTGTACT
GgcaaatgtttacaaaaattgctAGGAAGACTGGCTTGTAAATCTTTTGA
GAATGTTTACATGAAATCAAAACAGTAGAGTATCAAATCACAAATAAAAA
CATGGTTTCTCAGCAGACATATGTCTCAGCAAGGAACTTGGTCTCAGCAG
GCAGACACATTGAAGAAAGCCACtacaacaaaaaagtaaaaacaacaaag
agtgATTCCAAGTGACATTGATGTCAGAACTGATTTACATCGTTTGGAAT
TATTGCTGGAAGACAAAAAAACTAGTTGCTCATCGATACTTCGCTTGAAG
GAAAGGTAAagcttgatttttttattttcgggATACCGTCAAGTAGTGAT
ACATTGCACTTCCCTGCCATACTTTGCACTCACCTCATTTCCTTTGTTTA
TGTTCTCAAAAATCGGTCAGCACTATAAACTATGTTTTATTATTCACTTG
AACCATTTGATCAATCATTTataaaaaagcaacaaaaagttGCAGATCAG
ATTACTCCCAGATTACTACTTGAAATAATTAAGAAGCAATTAATTGAACg
aattgaaatcaaaaaatgcCAGCGTgctcattgttttttttgttatttgc
aCAAGTGATATAGTCGAAATTTTTTTACATccagcttcttttttttttat
tatacatTTAACAATTTTGAGCATGATTGACCTGCTTGATTTGTACGAAT
TGCCCCTTTTTATCACCATGGTTTCACTTTAAGTTTATATTGCTATTCGA
TAAAATACACAGTGCAAAGTATGGCAGAGAAGTGCAATGTATCACTACTT
GACGGTAGtcatcaaacaacaaaaagTATAAACAACACGATAAGCAATAT
GTGTTTTTAGAAGGTTCGTTGTAATTCTTGCACAAGCAAGCACAATACAT
CTGTTGTTTGGTTTACTTATTCGTACTTTGAGTTGAGCaagaattaattt
tcttttatcTGCCACAAATTTAAGTCACATCAAGTCTGGAATCCGGGCCA
GCCCACAGAGTTTTCCAAATCATCTTTAACCCTATTTGCACTGGAGTTCT
CGAATCTTTTGACTCTACCAACTTATTTTTTCATATCGTTTTTAAAAAAA
CGTTAGGCTAAATATTATGATGACAACAGACAAAAGTGGCTGTTCATTCT
GTCTGCAGTTTATAGTATCGGTCAAAACACAAGATTTTAAAACACTGAAA
ATGCCATAAAACCTGAACCACTTCAGTAAATCCCatgaaattttggacaa
ttatTCAGTTTTAGACATAGAATAAGActgcataaattttttttcaataa
ttcctTTAGTTTGTGACCTCATTTTTCCAGGGTGGACCGCATCatgattt
tacgtttttcttgTAATTGGgctaaatttctcaaaaaatactgCTTTTAA
TGACATTGATTTTCCTCATTTAAACCTAAATACTACTTtggtaccaaatt
tcatgtcaaTAGACAATACCATCTCTTTCATTGAAGAGCTAAGagcaaat
tttgtaaaattgaatcattttccAGTCTGTCTGGTTAGTTGGACATGAAT
TGAGGGTTGTCACcgtcaacttttttttttcaatttcctcAAAAGATCTT
TCAACAATTTTATCTATGTCGACATTGATGTGAGTTTCCTGTTTTCAatg
ttgttatatatcttttacCCTGAAATGAAAAGTAAAGTCAAATTATGATT
GTCGACAACTTATCATtcttccatttttgttttgtagGTATGAAAATGTC
TTATCAAAGGCAAGGAAGGAAAAGGTTTTGACAGCTGTTACAATCGACGT
TCTAGAATGCTATAGAATAGGTTAACGTCCATTGCACTTGTGTACATTCA
TCGTGAGATTGAACTCGACCCAGAGGAAGTGGTCGATGAATTCGCAAAAA
ACAATTGATATAGGATGGAATTCTGTGATATTCTTGCAGACGCTGAAGAT
TGACATTTTTTTGCTATCTAGAGTTTTGCTCCGAAAACTCCAGTTGGATT
TTTCTTATGACTGAAActtggaaaaataatttgatttgcTTTCTGAAGGC
AAGTAATCTAATGAACTATAAAAGTTGGTTGAGAATCACTCACTCGTTGC
TTATTCATTTTGACTTTACCTATTTTCTTtcgatttgttttcaaaattaa
tctGCTCGATGATTCTAATCTAATCATGCTTTATTATTTAATCGAGCTTT
CAAGCAAGAAATCTTGCATTTGAGATTGGTATTATCTATTGCCTTTTAGT
CTGTGTTTATTACAATGTAGATAATAGTTTATAtgtaaaattttacaaaa
tattcTATTTCTTAACACTTCCATTTCTACAATATAATGAAAGATttttg
ttattataaaaaaacaatcttCTTCGCCCTGACATTCCTGGTCTCGCTTC
ATATGATTTCAGAGAAGCTACAAAAAAGTTAGGTCAACTTCTCTCTGACT
GctaggtttttgtttttgcccTGAATAAATGCAAAGTAAAACATATTTAG
AGTCATCGGGAAAAtcgatacaatttttttttatcccAATTTAAGAGATT
CCAGATGTTACAGAAAGTTTAGAACAACATTCACAAAAAGTGATGAAACA
TTTAGTTCGAGGGTTTGATTTTAATCTATTTTAAGGACTTGAAACTTGAA
GAATCGTAAGGCTCTAGGGGGCTTCGCCCCCTGAACCCCCACCAGGGCCA
GCCCTGGACCCGTAGGGGGGCTTAGAGCGCCCCCCAAACCCCCTGCTCTT
TTTATCACGCCTTCGGCGTGAAAATGCTCCTACGGAGCATTCTTTCATTT
CGGGGAAATTATCGGGGTTTTCGTTATCCGAATCGGGGAAATCGGATCTT
TCATATGGTCGCAAAATATCCTAAATCCGCCCCTGCTCCCCTTCTCAGAG
TTCCGAattgaaaggaaaagaaaggAATATATATCATAAAAACGTGTCTA
TGAATTCAATTCCTATCTTcctttcccaaatctctggtgAAATCTACTTT
CTCAACCCTGACATATTACAATGTTATTTTTATCCATGTAGACAATTGAA
GAAATCACAAGGTAGGGAAAGTTTTGAGATTCACgaccattttaattttt
tttcctgtgGTTATTAGAGTTGGCTTTCTTTTCCAGATGGCAATAAGAAG
AAATACACTCCACGTATAGACTTTTTGAAAACACGCTTGCACACAAAATC
TTTCTAAACGTAACAAACCCTACTATGCCTAATATCGTCAGCTACATAAA
GAAGTagggtttggtacaggctaatcAAAGTGCCGACAATGCCCATTTTC
GATCACCACGTCCCTGTTAGTGttcatcttcttcattttccaattttgat
aTCTCAGGAAATTACGGGAAAGCGAAGGCGTTGGTGCTGAGATTGTCAGC
TGTTGTCCAAAATTTGTTATGGTTTGTCAATAAATTGGATGACAAAGGTG
AGTTTTTAAATTTACACTCAAATGTTTGTTTCAatcttttttccttaaaa
aagttTTCTCCCAAGGACTTTCGCCTTGAAGCTAGCCAACTGCATATACA
CCATAGCTAGCTAAACTATTGTGGTTAGgatgggaaattccctttttcaG
GAATACGAATATGTATTGAATGATGCGAGgtccttttaaaaaaagtgaaa
atgtgCTTCCATTCAGGACTCCACCTTAAAAAAACGACTTCAAATACGGT
TTGCACTATGCGAATTGACCCATGTTCCCCTCTGCACCCGTGATGTTCTT
TAATATACATTGCTGGTTTTGTTTTCAATATGCTCAAATGATTATACTGG
CTAAATCTTTTATGTGGCTGCTATCAATAGTGGAAATCAAAATGACTCGC
TTGTGTTCTAGATGCGACAATGAAGGAAAGCGATACAACATCTGAAAAAG
ACGACGCGGAAGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063822-exon-scaffold_401-1491911889:35074..35402 | TCONS_00063822-exon-scaffold_401-1491911889:35074..35402 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1510915933:35074..35402 | TCONS_00063822-exon-scaffold_401-1510915933:35074..35402 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1575043694:35074..35402 | TCONS_00063822-exon-scaffold_401-1575043694:35074..35402 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1491911889:35939..36133 | TCONS_00063822-exon-scaffold_401-1491911889:35939..36133 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1510915933:35939..36133 | TCONS_00063822-exon-scaffold_401-1510915933:35939..36133 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1575043694:35939..36133 | TCONS_00063822-exon-scaffold_401-1575043694:35939..36133 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1491911889:41031..41120 | TCONS_00063822-exon-scaffold_401-1491911889:41031..41120 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1510915933:41031..41120 | TCONS_00063822-exon-scaffold_401-1510915933:41031..41120 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1575043694:41031..41120 | TCONS_00063822-exon-scaffold_401-1575043694:41031..41120 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1491911889:41535..41590 | TCONS_00063822-exon-scaffold_401-1491911889:41535..41590 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1510915933:41535..41590 | TCONS_00063822-exon-scaffold_401-1510915933:41535..41590 | Clytia hemisphaerica | exon |
| TCONS_00063822-exon-scaffold_401-1575043694:41535..41590 | TCONS_00063822-exon-scaffold_401-1575043694:41535..41590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_401 | supercontig | scaffold_401:35074..41590 + |
Blast
The following BLAST results are available for this feature:
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