TCONS_00063817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063817
Unique NameTCONS_00063817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063817 ID=TCONS_00063817|Name=TCONS_00063817|organism=Clytia hemisphaerica|type=transcript|length=582bp
CAGAAAAGCAGACTGTCTTTGATAAACATAGAACAGATAAATCATTTTAG
GATAAATAAATTGCCATAGTTTTTAAGAGTTTATTCATGCATTCGCAAAC
AAGGTTCATCATGTGGGAGCACCATTTTAGAAATAAAAGGCTTTTTCGGG
TGAGTTTCTctagaaaagttagaaaaagacatcactttcaaaaataaaaa
ctcgaATATTGCAAGCTTTTCATTGGAATGCTAAATACTGATGTAATTGA
TTTATATGGTATATTGTTAACTTTAGGGCCTCATCAACACAGGGTTTATC
GAGTTGCTTTGGTAATATGTGTTACATATTGTTTTAggaagattgtttaa
taaattataacagatcatttacttatttgaataagaaagagtatgtttcc
acggttcgtattttgaacatgggaaaaatgaaacaatcagccaaaaatag
CACCCAGAAATCAACAACATTCCAAAACTGTTGTGGTAGAAAGTCAGTAC
TTTAATTTTCAAAGCTTGCTTCAGAGTTTCAgccaaaagttttaaataaa
gtgtATGCAATTGCCTTTCCCATACAAATCTG
Run BLAST on NCBI

transcript from alignment at scaffold_400:246760..247341

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063817 ID=TCONS_00063817|Name=TCONS_00063817|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_400:246760..247341 (Clytia hemisphaerica)
CAGATTTGTATGGGAAAGGCAATTGCATacactttatttaaaacttttgg
cTGAAACTCTGAAGCAAGCTTTGAAAATTAAAGTACTGACTTTCTACCAC
AACAGTTTTGGAATGTTGTTGATTTCTGGGTGctatttttggctgattgt
ttcatttttcccatgttcaaaatacgaaccgtggaaacatactctttctt
attcaaataagtaaatgatctgttataatttattaaacaatcttccTAAA
ACAATATGTAACACATATTACCAAAGCAACTCGATAAACCCTGTGTTGAT
GAGGCCCTAAAGTTAACAATATACCATATAAATCAATTACATCAGTATTT
AGCATTCCAATGAAAAGCTTGCAATATtcgagtttttatttttgaaagtg
atgtctttttctaacttttctagAGAAACTCACCCGAAAAAGCCTTTTAT
TTCTAAAATGGTGCTCCCACATGATGAACCTTGTTTGCGAATGCATGAAT
AAACTCTTAAAAACTATGGCAATTTATTTATCCTAAAATGATTTATCTGT
TCTATGTTTATCAAAGACAGTCTGCTTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040009XLOC_040009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063817-exon-scaffold_400-1491911889:246760..247341TCONS_00063817-exon-scaffold_400-1491911889:246760..247341Clytia hemisphaericaexon
TCONS_00063817-exon-scaffold_400-1510915933:246760..247341TCONS_00063817-exon-scaffold_400-1510915933:246760..247341Clytia hemisphaericaexon
TCONS_00063817-exon-scaffold_400-1575043694:246760..247341TCONS_00063817-exon-scaffold_400-1575043694:246760..247341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_400supercontigscaffold_400:246760..247341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.599831	0.631134	3.47933	5.01739	0	0	0.285755	0.228963	0.0801512	0	0	0.0633458	0.106218	0	0.225235	0.309884	0	0	1.1122	0.370722	0.40853	0.269136	0	0	0.204241	0.134845	0.313511	0.278378	0.10557	0.492098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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