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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063803 ID=TCONS_00063803|Name=TCONS_00063803|organism=Clytia hemisphaerica|type=transcript|length=3196bpRun BLAST on NCBI transcript from alignment at scaffold_400:63501..73117- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063803 ID=TCONS_00063803|Name=TCONS_00063803|organism=Clytia hemisphaerica|type=transcript|length=9617bp|location=Sequence derived from alignment at scaffold_400:63501..73117- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063803 vs. Swiss-Prot (Human)
Match: ZN836 (Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2) HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0 Identity = 343/698 (49.14%), Postives = 434/698 (62.18%), Query Frame = -2
Query: 1093 KNIPNSKIVGSPQEADHKVETHVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALKVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKRFSSSSNLKKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCGYCEKGFRSSSDLKKHTRTHTGEKPYKCNDCEKTCSSSSNLTKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCAYCEKGFRSSSDLKIHTRTHTGEKPYKCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFK------------------SDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHTGDK 3132
K + NS +V Q V+T++ S+K+ + + T + +TH EKPY C C K SS+L HQ+ H EKP+KC+ CGKAF S L +H +HT +PY+CG C K FR +SDL H R+HTGEKPYKCN+C K FS S NL H HTGEKP+KC+ C K F+ S L H IHTGE+PY+C C K FR +S+L H R HTGEKPYKCN C K+ S SSNL H H+G KP+KCD C K F+ +S+L H IHTGE+PY C C+K F S L H R+HTGEKPYKCN+C K S + +L H HTGEKPYKC+ C K S L +H++ H EK ++C CGK F + S L H+RIHTGEQPYKC C K F S +L IH R HTGEKP++CN+C F + S L +HL HTG+KP+KC++CGK F D+ L H RIHTGEKP++C C KVF S L H + HTGEKPY+CN CGK ++Q +SL KH HTGE+P+ + + + C++C + F + L H R HTGE PY+C +C + F+ +SNL +H+ IHTGEKPYKC+ C K FR S L H IHTGEKPY C C K FR S L +H + HTG+KPY+CN CGK F + + L HQ HTG+K
Sbjct: 169 KTVNNSSLVSPLQRILPSVQTNI-SKKYENEFLQLSLPTQLE-----KTHIREKPYMCKGCGKAFRVSSSLINHQMVHTTEKPYKCNECGKAFHRGSLLTIHQIVHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQCNECGKVFSYYSCLARHRKIHTGEKPYKCNDCGKAYTQRSSLTKHLIIHTGEKPYNCNEFGGAFIQSSKLARYHRNPTGEKPHKCSHCGRTFSHITGLTYHQRRHTGEMPYKCIECGQVFNSTSNLARHRRIHTGEKPYKCNECGKVFRHQSTLARHRSIHTGEKPYVCNECGKAFRVRSILVNHQKMHTGDKPYKCNECGKAFIERSKLVYHQRNHTGEK 860 HSP 2 Score: 652.129 bits (1681), Expect = 0.000e+0 Identity = 341/668 (51.05%), Postives = 421/668 (63.02%), Query Frame = -2
Query: 1069 THVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALKVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKRFSSSSNLKKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCGYCEKGFRSSSDLKKHTRTHTGEKPYKCNDCEKTCSSSSNLTKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCAYCEKGFRSSSDLKIHTRTHTGEKPYKCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHTGDKFSKSDNLE 3072
H + + C C K FR +SDL H R+HTGEKPYKCN+C K+ S S NL HQ H GEKP+KC+ CGK F S L H IHTGE+PY+C C K FR +S+L H R HTGEKPYKCN C K FS SSNL H H+G KP+KCD C K F+ +S+L H IHTGE+PY C C+K F S L +H R+HTGEKPYKCN+C K S +S+L H HTGEKP+KCD C KAF+ S L H IHT E+ Y+C C K F +S L H R HTGE+PYKCN C K + S NL+ H HTGEKP++CN+C + S L +H H G+KP+KC++CGK F D+ L H RIHTGE+P++C C K F S L H + HTGEKPYKCNDC K ++ S+L KHL+ HTGEKP+ C+ G AF +S L + R TGEKP+KC++C + F + L H R HTGE PY+C CG+ F+ +++L +H+ HTGE+P+K C C K FR S L H HTGEKPY C++C KAF S L HQ +HTG+KPYKC+ C K F S L H R HTGEKPYKCI C K F S L H H+GEKPY+CN CGK+F + L KHQ HT + N+E
Sbjct: 267 VHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQCNECGKVFSYYSCLARHRKIHTGEKPYKCNDCGKAYTQRSSLTKHLIIHTGEKPYNCNEFGGAFIQSSKLARYHRNPTGEKPHKCSHCGRTFSHITGLTYHQRRHTGEMPYKCIECGQVFNSTSNLARHRRIHTGEKPYK----------CNECGKVFRHQSTLARHRSIHTGEKPYVCNECGKAFRVRSILVNHQKMHTGDKPYKCNECGKAFIERSKLVYHQRNHTGEKPYKCIECGKAFGRFSCLNKHQMIHSGEKPYKCNECGKSFISRSGLTKHQTKHTAESLKTKFNVE 924 HSP 3 Score: 442.195 bits (1136), Expect = 1.215e-137 Identity = 245/518 (47.30%), Postives = 306/518 (59.07%), Query Frame = -2
Query: 1093 SDLKKHTRTHTGEKPYKCNDCEKTCSSSSNLT--KHLL--------------------------THTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCAYCEKGFRSSSDLKIHTRTHTGEKPYKCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDL------------------SDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHTGDK 2508
S L + + T K Y+CN EKT ++SS ++ + +L TH EKP+ C C KAFR +S+L H +HT E+PYKC C K F S L IH HT KPY+C C K + +L H +HTGEKPYKCN+C K+ S S NL HQ H GEKP+KC+ CGK F S L H IHTGE+PY+C C K FR +S+L H R HTGEKPYKCN C K+FS SSNL H H+G KP+KCD CGK F+ +S+L H IHTGEKPY C C+KVF S L H R+HTGEKPY+CN CGK FSQ++ L H+ HTGE+P+K D + + + C C K F +S L H R HTGE+PY+C+ C K F+ S NL H+ IHTGEKP++C+ C FR S L H RIHTG+KPYKC C K F S +L +H R HTGEKP++CN CGK FS + L +H+ HTG+K
Sbjct: 147 SRLTELQKFQTEGKIYECNQSEKTVNNSSLVSPLQRILPSVQTNISKKYENEFLQLSLPTQLEKTHIREKPYMCKGCGKAFRVSSSLINHQMVHTTEKPYKCNECGKAFHRGSLLTIHQIVHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQCNECGKVFSYYSCLARHRKIHTGEK 664 HSP 4 Score: 319.316 bits (817), Expect = 1.315e-92 Identity = 181/377 (48.01%), Postives = 220/377 (58.36%), Query Frame = -2
Query: 1078 KCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHTGDKFSKSD 2208
KC + + T S LT+ T K Y+CN EKT ++SS + Q + F S + H E+PY C C K FR SS L H HT EKPYKCN+C K F S L H + HT KP++C +CGK FR S L H R HTGEKPYKC C K F S +L H R HTGEKPY+CN CGKTF Q + L HQ HTGE+P++ D+ C K FR +S+L H R HTGEKPY+C+ C K+FS SSNL HQ++H+G KPYKCD C K F+ SS+L H IHTGEKPY C C+K F S L H R+HTGEKPY+CN CGK FSQ++ L H+ HTG+K K D
Sbjct: 135 KCIENQLTLSFQSRLTELQKFQTEGKIYECNQSEKTVNNSSLVSPLQRILPSVQTNISKKYENEFLQLSLPTQLEKTHIREKPYMCKGCGKAFRVSSSLINHQMVHTTEKPYKCNECGKAFHRGSLLTIHQIVHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDI----------CGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCD 501 The following BLAST results are available for this feature:
BLAST of TCONS_00063803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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