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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063748 ID=TCONS_00063748|Name=TCONS_00063748|organism=Clytia hemisphaerica|type=transcript|length=1183bp
TTTTAGAAGGAAAAGCTAGGTTCTTACGAGAGCAAGGAATGGGGAAAAGA
CCAAACAAGGCGATCAGCTTAACGAGAGCAGAGGAGGAGACACTGTGGGA
GTGTGGTCAATTTGGTATTGAAAATGCATTTTCCCTTATCAATACTATCT
GGTGGCAATTTACAATGCATTTTGGTTTGAGAGGTCGTCAGGAGCATCAC
ATAATGAAGGTTGAAGATTTTACATGGAAAGTTGATGAAGAAGGAAACGA
ATTTCTCACCTTTGCTGAAAGTTTTTCCAAAACCAGACAAAATGGTCTTC
GAGAGATTCACAGATCAGTGCAACCCAAGATGTTTGCTAATGGTTCTTCT
CGTTGCCCAGTGATGATTTACAAATTTTATCTCTCAAAACGACCACTATC
ACTTCGAATATCAGGTCCAATGTATTTGTCTATCAATCATAAATCAACAA
CAAATCTTTGgttcaaaaaacaaaacatgggTAAAAATACCATCGACTCA
ATCATGAAGAGAATGATTCAAAATTCTCCTCTTGCGGCATCTTCGTCTGG
TAAGAAACTGACCAACCACTCAGCTCGAAAGACAGTTGTGAAGAGATTGA
AAGCCAACAGTGTTCCTCGTTCAGAGATAATCGGTATTACTGGACACAAA
AATGAGGCTGGTTTGGATGCCTACGACAGCGGTGACGAGGTGGAGCAAAG
AAAAATCTCCCATGCTATTGACAACGTCCCTTGCTCCAGTTCTTCCCGGG
GTTCGAACCAAAATCCCCAAAATGTCATGTTGGTATCTTCTACAGATATG
AGAGTACAAAATCCTACGTTTAGTTTTTTCGATCAACAACAACAAGTTTT
GTACCCACGCACGTCAGCATTTAATTTTCATGGATGCACTGTCAATTTTT
ATAACCAGTCACAAACACCATCCACAAATGCTTCTTCTTCACAACCACGT
CCGAAAAAACGCAGATGCATCATTTACTCAGATTCTGAATCTTCACAAGa
actttgaatttttgtttttgtttttacacGTCCTGACTCAATGAAGTCTG
TTTGTAAATGATTTGTTTAGACACgttttgtaaattattttcgAGGTTCC
AATGTTTAAATATTTTATGACATCAAGTAATAATTATTTCGTCTacgttt
tcttttgttttacaactttctcttttgttcttg Run BLAST on NCBI protein sequence of TCONS_00063748-protein >TCONS_00063748-protein ID=TCONS_00063748-protein|Name=TCONS_00063748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
LEGKARFLREQGMGKRPNKAISLTRAEEETLWECGQFGIENAFSLINTIW
WQFTMHFGLRGRQEHHIMKVEDFTWKVDEEGNEFLTFAESFSKTRQNGLR
EIHRSVQPKMFANGSSRCPVMIYKFYLSKRPLSLRISGPMYLSINHKSTT
NLWFKKQNMGKNTIDSIMKRMIQNSPLAASSSGKKLTNHSARKTVVKRLK
ANSVPRSEIIGITGHKNEAGLDAYDSGDEVEQRKISHAIDNVPCSSSSRG
SNQNPQNVMLVSSTDMRVQNPTFSFFDQQQQVLYPRTSAFNFHGCTVNFY
NQSQTPSTNASSSQPRPKKRRCIIYSDSESSQEL Run BLAST on NCBI transcript from alignment at scaffold_4:102042..103224 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063748 ID=TCONS_00063748|Name=TCONS_00063748|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_4:102042..103224 (Clytia hemisphaerica)
caagaacaaaagagaaagttgtaaaacaaaagaaaacgtAGACGAAATAA
TTATTACTTGATGTCATAAAATATTTAAACATTGGAACCTcgaaaataat
ttacaaaacGTGTCTAAACAAATCATTTACAAACAGACTTCATTGAGTCA
GGACgtgtaaaaacaaaaacaaaaattcaaagttCTTGTGAAGATTCAGA
ATCTGAGTAAATGATGCATCTGCGTTTTTTCGGACGTGGTTGTGAAGAAG
AAGCATTTGTGGATGGTGTTTGTGACTGGTTATAAAAATTGACAGTGCAT
CCATGAAAATTAAATGCTGACGTGCGTGGGTACAAAACTTGTTGTTGTTG
ATCGAAAAAACTAAACGTAGGATTTTGTACTCTCATATCTGTAGAAGATA
CCAACATGACATTTTGGGGATTTTGGTTCGAACCCCGGGAAGAACTGGAG
CAAGGGACGTTGTCAATAGCATGGGAGATTTTTCTTTGCTCCACCTCGTC
ACCGCTGTCGTAGGCATCCAAACCAGCCTCATTTTTGTGTCCAGTAATAC
CGATTATCTCTGAACGAGGAACACTGTTGGCTTTCAATCTCTTCACAACT
GTCTTTCGAGCTGAGTGGTTGGTCAGTTTCTTACCAGACGAAGATGCCGC
AAGAGGAGAATTTTGAATCATTCTCTTCATGATTGAGTCGATGGTATTTT
TAcccatgttttgttttttgaacCAAAGATTTGTTGTTGATTTATGATTG
ATAGACAAATACATTGGACCTGATATTCGAAGTGATAGTGGTCGTTTTGA
GAGATAAAATTTGTAAATCATCACTGGGCAACGAGAAGAACCATTAGCAA
ACATCTTGGGTTGCACTGATCTGTGAATCTCTCGAAGACCATTTTGTCTG
GTTTTGGAAAAACTTTCAGCAAAGGTGAGAAATTCGTTTCCTTCTTCATC
AACTTTCCATGTAAAATCTTCAACCTTCATTATGTGATGCTCCTGACGAC
CTCTCAAACCAAAATGCATTGTAAATTGCCACCAGATAGTATTGATAAGG
GAAAATGCATTTTCAATACCAAATTGACCACACTCCCACAGTGTCTCCTC
CTCTGCTCTCGTTAAGCTGATCGCCTTGTTTGGTCTTTTCCCCATTCCTT
GCTCTCGTAAGAACCTAGCTTTTCCTTCTAAAA Coding sequence (CDS) from alignment at scaffold_4:102042..103224 >TCONS_00063748 ID=TCONS_00063748|Name=TCONS_00063748|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at scaffold_4:102042..103224 (Clytia hemisphaerica)
tcaaagttCTTGTGAAGATTCAGAATCTGAGTAAATGATGCATCTGCGTT
TTTTCGGACGTGGTTGTGAAGAAGAAGCATTTGTGGATGGTGTTTGTGAC
TGGTTATAAAAATTGACAGTGCATCCATGAAAATTAAATGCTGACGTGCG
TGGGTACAAAACTTGTTGTTGTTGATCGAAAAAACTAAACGTAGGATTTT
GTACTCTCATATCTGTAGAAGATACCAACATGACATTTTGGGGATTTTGG
TTCGAACCCCGGGAAGAACTGGAGCAAGGGACGTTGTCAATAGCATGGGA
GATTTTTCTTTGCTCCACCTCGTCACCGCTGTCGTAGGCATCCAAACCAG
CCTCATTTTTGTGTCCAGTAATACCGATTATCTCTGAACGAGGAACACTG
TTGGCTTTCAATCTCTTCACAACTGTCTTTCGAGCTGAGTGGTTGGTCAG
TTTCTTACCAGACGAAGATGCCGCAAGAGGAGAATTTTGAATCATTCTCT
TCATGATTGAGTCGATGGTATTTTTAcccatgttttgttttttgaacCAA
AGATTTGTTGTTGATTTATGATTGATAGACAAATACATTGGACCTGATAT
TCGAAGTGATAGTGGTCGTTTTGAGAGATAAAATTTGTAAATCATCACTG
GGCAACGAGAAGAACCATTAGCAAACATCTTGGGTTGCACTGATCTGTGA
ATCTCTCGAAGACCATTTTGTCTGGTTTTGGAAAAACTTTCAGCAAAGGT
GAGAAATTCGTTTCCTTCTTCATCAACTTTCCATGTAAAATCTTCAACCT
TCATTATGTGATGCTCCTGACGACCTCTCAAACCAAAATGCATTGTAAAT
TGCCACCAGATAGTATTGATAAGGGAAAATGCATTTTCAATACCAAATTG
ACCACACTCCCACAGTGTCTCCTCCTCTGCTCTCGTTAAGCTGATCGCCT
TGTTTGGTCTTTTCCCCATTCCTTGCTCTCGTAAGAACCTAGCTTTTCCT
TCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063748-exon-scaffold_4-1491911889:102042..103224 | TCONS_00063748-exon-scaffold_4-1491911889:102042..103224 | Clytia hemisphaerica | exon |
| TCONS_00063748-exon-scaffold_4-1510915933:102042..103224 | TCONS_00063748-exon-scaffold_4-1510915933:102042..103224 | Clytia hemisphaerica | exon |
| TCONS_00063748-exon-scaffold_4-1575043694:102042..103224 | TCONS_00063748-exon-scaffold_4-1575043694:102042..103224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:102042..103224 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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