TCONS_00063736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063736
Unique NameTCONS_00063736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063736 ID=TCONS_00063736|Name=TCONS_00063736|organism=Clytia hemisphaerica|type=transcript|length=441bp
ATCTTTTCGGGCGGCCGCCTAACTTATCGATAGATGGTCATCAAATTAGC
TTTCTGGTCTGCATTTTATATTTGAATTTTAGGCGGCCGCCCATTCTAAC
TCAGGCGGCCGCCCAACTTGTTAAATCTTAGGCGGCCGCCTGAGTTGGGA
TAGGCGGCCGCCTATTCTAATTCAGGCGGCCGCCTAACTAGTTAAATCTT
AGGCGGCCGCCTGAGTTGGCCGCCTATCTTCTGTTGCACGTGGTAAtaaa
gtcatcaaaaataccaaaatggtGTATCAAGTTGCAGAAAAATGGCGACA
AACGATGAAAAACGTGACGATGATGAAAATGGACAGGCATTAGTtgtatt
tgattttcaaaagATCGAAAATTTCCTACAAAGACGTGGATGTATTCATT
TGCTGGAGAACTTTATAGTGAATAAAATTGATGACACTGTT
Run BLAST on NCBI

transcript from alignment at scaffold_4:105553..106379+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063736 ID=TCONS_00063736|Name=TCONS_00063736|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at scaffold_4:105553..106379+ (Clytia hemisphaerica)
ATCTTTTCGGGCGGCCGCCTAACTTATCGATAGATGGTCATCAAATTAGC
TTTCTGGTCTGCATTTTATATTTGAATTTTAGGCGGCCGCCCATTCTAAC
TCAGGCGGCCGCCCAACTTGTTAAATCTTAGGCGGCCGCCTGAGTTGGGA
TAGGCGGCCGCCTATTCTAATTCAGGCGGCCGCCTAACTAGTTAAATCTT
AGGCGGCCGCCTGAGTTGGCCGCCTATCTTCTGTTGCACGTGGTAAtaaa
gtcatcaaaaataccaaaatggtGTATCAAGTTGCAGAAAAATGGCGACA
AACGATGAAAAACGTGACGATGATGAAAATGGACAGGCATTAGTtgtatt
tgattttcaaaaggtAACTATTTTGTTAATCTAGATTTCAATCTAATTGT
AaatacttttgttttgataggcAGTGATAGGTTTATTGAGTCTCTCAAAC
ATGCTCAAACATCTTGGGAATCCGATGTCTCACCATTTCTTTTTCACACT
GTTTGAGTCCTCTCTTCTCTCTTATCCTGTGTGGAAAATAGTTTGGGAGC
AATGGTTTGTCCATGGAAAAAAAGCAGtcaagttgttttttgaaatgatC
CTTAGTACGTATACTCTTGTAACTTACGAAGGTAACTAATGTAAGGTATA
ATGTAATGTTGATGTGTGTGTTAATGTGGTGATAGTAGAGTAGTAGAGTA
CCCTGTCCATGAAGtaaatttagaatttaatttGTTCTTTCCTCTTCAGA
TCGAAAATTTCCTACAAAGACGTGGATGTATTCATTTGCTGGAGAACTTT
ATAGTGAATAAAATTGATGACACTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039958XLOC_039958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063736-exon-scaffold_4-1491911889:105553..105915TCONS_00063736-exon-scaffold_4-1491911889:105553..105915Clytia hemisphaericaexon
TCONS_00063736-exon-scaffold_4-1510915933:105553..105915TCONS_00063736-exon-scaffold_4-1510915933:105553..105915Clytia hemisphaericaexon
TCONS_00063736-exon-scaffold_4-1575043694:105553..105915TCONS_00063736-exon-scaffold_4-1575043694:105553..105915Clytia hemisphaericaexon
TCONS_00063736-exon-scaffold_4-1491911889:106302..106379TCONS_00063736-exon-scaffold_4-1491911889:106302..106379Clytia hemisphaericaexon
TCONS_00063736-exon-scaffold_4-1510915933:106302..106379TCONS_00063736-exon-scaffold_4-1510915933:106302..106379Clytia hemisphaericaexon
TCONS_00063736-exon-scaffold_4-1575043694:106302..106379TCONS_00063736-exon-scaffold_4-1575043694:106302..106379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:105553..106379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0769539	0	0.346562	0.510008	1.87986	1.62434	1.83502	1.1053	0.00218594	0.959085	1.24144	0.00284221	2.49682	0.372963	0.745472	0.839675	0	0.636968	3.86695	0.257537	1.33513	0.654176	0.615752	0.160435	3.94987	3.58258	0.950123	0	0.170461	0.172929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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