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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063733 ID=TCONS_00063733|Name=TCONS_00063733|organism=Clytia hemisphaerica|type=transcript|length=381bp
CTTCAAATCgaatcaatttaatttcaaatctTCTTCTCCTTTCTTGTGGA
AAGAGAAGAATCATTTACAATGAGTAAGgtCTCGTTGCTTATTTTGGCTG
CTGTTGTTGCCGTAGCAACCGCAAACAATTATGTTCGTGTGTGCTATTAC
ACAAATTGGGCGCAATACCGCCCAGCGCCCATGAAGTTTTTCCCTGAAGA
TATCGACCCTAACCTATGCACACATGTCATCTATGCTTTCGCTAAACTCG
GACGAAACAGTGAATTGGCCATGTATGAATGGAATGACGACAAGATGTAC
CCACGTGTCAtggctttgaaaaagaaaaatcctgCCCTTAAAGTCCTTTT
GGCGGTGGGCGGATGGAACCACGAAAACGGA Run BLAST on NCBI protein sequence of TCONS_00063733-protein >TCONS_00063733-protein ID=TCONS_00063733-protein|Name=TCONS_00063733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSKVSLLILAAVVAVATANNYVRVCYYTNWAQYRPAPMKFFPEDIDPNLC
THVIYAFAKLGRNSELAMYEWNDDKMYPRVMALKKKNPALKVLLAVGGWN
HENG Run BLAST on NCBI transcript from alignment at scaffold_4:11879..13235+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063733 ID=TCONS_00063733|Name=TCONS_00063733|organism=Clytia hemisphaerica|type=transcript|length=1357bp|location=Sequence derived from alignment at scaffold_4:11879..13235+ (Clytia hemisphaerica)
CTTCAAATCgaatcaatttaatttcaaatctTCTTCTCCTTTCTTGTGGA
AAGAGAAGAATCATTTACAATGAGTAAGGTACGGTATTTTATGAtgtaaa
attttctaatttttgtagattttgatTGCTTTTGTAATGGTTCCATTAGT
AACATTAAGTGGATTAAATGTCGTgtagattaattttcgcgaattttgtg
aattttttggCGAAATTACTCGCGGAAATTTTTGAATCCAGATTTTGGTG
AATACCcgtaggaaaatgaaagaaattttgtaaaaaataggCTCATTTGC
ATTTATTTgcccacgcgaaaattttctcAGATTCTCAGTTCGTGAAAaaa
agtccacgcgaaaattaatccacaacTATTGCTAAattcatttttacaat
tttattttcaagtagctgatttttcaattaaatgattttttggtaatttt
tcacAAGACCTTTACAAGGAAAGCAAGTTAACTAGAATCTAATATGGTCc
ctttctaaatttgaaaacttttgttgaGAGCAGTTTTTATTTGGACAAAG
ACTATTATTCaatatttcttgtttttttttactatataactGCAAGACAT
TCGCTCCAGTTTATCgtttattttttcacatttaaggtCTCGTTGCTTAT
TTTGGCTGCTGTTGTTGCCGTAGCAACCGCAAACAATTATGTTCGTGTGT
GCTATTACACAAATTGGGCGCAATACCGCCCAGCGCCCATGAAGTTTTTC
CCTGAAGATATCGACCCTAACCTATGCACACATGTCATCTATGCTTTCGC
TAAACTCGGACGAAGTAAGTTACAATTTCATTCACTCTCTCATATAATTT
TATTCTCTATTTGATGTTTTGATATATACccaatgaaattcaaaatgacC
ACCTTTTTTTCATTGAGTCTCTAACATGTTTCCTatgttacacgtttttc
ttataagaacatccaaagttcttaaagtcttcggatgttcttaacttttt
gagttatgAGCCCAAATATCTTATTTTCACCTAAAGACcctaaagcctaa
aaatattcttaacatgttcttatttttaccactTTCTGAGTATTTTTTGT
TCAACTTCCAAAGAAGTTTTAGAGTccgaaaagccttaaaattttctttt
aactttgttcttaatattttggccatcgaagccttatgttcttatatagt
ttgttcttataaaaaaacgtacatTATTTCAGACAGTGAATTGGCCATGT
ATGAATGGAATGACGACAAGATGTACCCACGTGTCAtggctttgaaaaag
aaaaatcctgCCCTTAAAGTCCTTTTGGCGGTGGGCGGATGGAACCACGA
AAACGGA Coding sequence (CDS) from alignment at scaffold_4:11879..13235+ >TCONS_00063733 ID=TCONS_00063733|Name=TCONS_00063733|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_4:11879..13235+ (Clytia hemisphaerica)
ATGAGTAAGgtCTCGTTGCTTATTTTGGCTGCTGTTGTTGCCGTAGCAAC
CGCAAACAATTATGTTCGTGTGTGCTATTACACAAATTGGGCGCAATACC
GCCCAGCGCCCATGAAGTTTTTCCCTGAAGATATCGACCCTAACCTATGC
ACACATGTCATCTATGCTTTCGCTAAACTCGGACGAAACAGTGAATTGGC
CATGTATGAATGGAATGACGACAAGATGTACCCACGTGTCAtggctttga
aaaagaaaaatcctgCCCTTAAAGTCCTTTTGGCGGTGGGCGGATGGAAC
CACGAAAACGGAATGAGTAAGgtCTCGTTGCTTATTTTGGCTGCTGTTGT
TGCCGTAGCAACCGCAAACAATTATGTTCGTGTGTGCTATTACACAAATT
GGGCGCAATACCGCCCAGCGCCCATGAAGTTTTTCCCTGAAGATATCGAC
CCTAACCTATGCACACATGTCATCTATGCTTTCGCTAAACTCGGACGAAA
CAGTGAATTGGCCATGTATGAATGGAATGACGACAAGATGTACCCACGTG
TCAtggctttgaaaaagaaaaatcctgCCCTTAAAGTCCTTTTGGCGGTG
GGCGGATGGAACCACGAAAACGGAATGAGTAAGgtCTCGTTGCTTATTTT
GGCTGCTGTTGTTGCCGTAGCAACCGCAAACAATTATGTTCGTGTGTGCT
ATTACACAAATTGGGCGCAATACCGCCCAGCGCCCATGAAGTTTTTCCCT
GAAGATATCGACCCTAACCTATGCACACATGTCATCTATGCTTTCGCTAA
ACTCGGACGAAACAGTGAATTGGCCATGTATGAATGGAATGACGACAAGA
TGTACCCACGTGTCAtggctttgaaaaagaaaaatcctgCCCTTAAAGTC
CTTTTGGCGGTGGGCGGATGGAACCACGAAAACGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063733-exon-scaffold_4-1491911889:11879..11956 | TCONS_00063733-exon-scaffold_4-1491911889:11879..11956 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1510915933:11879..11956 | TCONS_00063733-exon-scaffold_4-1510915933:11879..11956 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1575043694:11879..11956 | TCONS_00063733-exon-scaffold_4-1575043694:11879..11956 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1491911889:12515..12692 | TCONS_00063733-exon-scaffold_4-1491911889:12515..12692 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1510915933:12515..12692 | TCONS_00063733-exon-scaffold_4-1510915933:12515..12692 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1575043694:12515..12692 | TCONS_00063733-exon-scaffold_4-1575043694:12515..12692 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1491911889:13111..13235 | TCONS_00063733-exon-scaffold_4-1491911889:13111..13235 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1510915933:13111..13235 | TCONS_00063733-exon-scaffold_4-1510915933:13111..13235 | Clytia hemisphaerica | exon |
| TCONS_00063733-exon-scaffold_4-1575043694:13111..13235 | TCONS_00063733-exon-scaffold_4-1575043694:13111..13235 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:11879..13235 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001223 | Glyco_hydro18_cat |
| IPR017853 | Glycoside_hydrolase_SF |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
Blast
BLAST of TCONS_00063733 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.717e-27 Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 142 CYYTNWAQYRPAPMKFFPEDIDPNLCTHVIYAFAKLGRNSELAMYEWNDDKMYPRVMALKKKNPALKVLLAVGGWN 369
CY+TNWAQYR +F P+D+DP+LCTH+IYAFA + N +L+ EWND+ +Y LKK NP LK LLA+GGWN
Sbjct: 26 CYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM-TNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWN 100
The following BLAST results are available for this feature:
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