TCONS_00063731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063731
Unique NameTCONS_00063731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063731 ID=TCONS_00063731|Name=TCONS_00063731|organism=Clytia hemisphaerica|type=transcript|length=271bp
ctgtattcTTAAAGCTCAGAAAGGTTTTgacctttgaaaaataaaaatga
tttacTCGAGTTTCGTGTTGTGTGACGTGAGATTACTTATAACCTGtcaa
aagtaaacacaaaaagtTATTCCGACCCTTTACAAATGTGTTGACATTTT
TTATGATtatcaaaactataaaaatgACGTTTATTCTTACACCATGAAAG
ACGTAAAAGTGTCTATTTTAACATCCGAAACCTTTTCGATCCTGAAATAA
CAGCTTTTATAATCACTGTAg
Run BLAST on NCBI

transcript from alignment at scaffold_399:148201..148471

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063731 ID=TCONS_00063731|Name=TCONS_00063731|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at scaffold_399:148201..148471 (Clytia hemisphaerica)
cTACAGTGATTATAAAAGCTGTTATTTCAGGATCGAAAAGGTTTCGGATG
TTAAAATAGACACTTTTACGTCTTTCATGGTGTAAGAATAAACGTcattt
ttatagttttgataATCATAAAAAATGTCAACACATTTGTAAAGGGTCGG
AATAactttttgtgtttacttttgaCAGGTTATAAGTAATCTCACGTCAC
ACAACACGAAACTCGAgtaaatcatttttatttttcaaaggtcAAAACCT
TTCTGAGCTTTAAgaatacag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039954XLOC_039954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063731-exon-scaffold_399-1491911889:148201..148471TCONS_00063731-exon-scaffold_399-1491911889:148201..148471Clytia hemisphaericaexon
TCONS_00063731-exon-scaffold_399-1510915933:148201..148471TCONS_00063731-exon-scaffold_399-1510915933:148201..148471Clytia hemisphaericaexon
TCONS_00063731-exon-scaffold_399-1575043694:148201..148471TCONS_00063731-exon-scaffold_399-1575043694:148201..148471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:148201..148471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.43675	2.0176	0.470856	1.7497	0.566099	0.744262	0	0	0.634565	0.340493	0.419459	0	0	0	0	0	0	0.582456	0	1.07082	3.06468	0	0.62018	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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