TCONS_00063728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063728
Unique NameTCONS_00063728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063728 ID=TCONS_00063728|Name=TCONS_00063728|organism=Clytia hemisphaerica|type=transcript|length=296bp
TGATTAgtcaaggaaatttttttatcaagcaaAACCCAGGTGAAGCTAAT
TTGAGCATTGAAGATTTACAAGATCTTGTTAGGGATAATGATCACTACGT
AGTAATTAAAAAACTACAAAGATACTCAAAGAATGTAACAGGTACGAATG
CCTATTGGTGCGATGTCAAGGAAAAATTAAAAGCCACGATAACGCAAATG
GGCACGCCAACTATATTTTGGACATTGAGTATGGCTGATTTTCACTGGCC
AGACattcatgatttattttcttcaaatgacGAATCTGAATCTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_399:125180..125475

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063728 ID=TCONS_00063728|Name=TCONS_00063728|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at scaffold_399:125180..125475 (Clytia hemisphaerica)
AGCAGATTCAGATTCgtcatttgaagaaaataaatcatgaatGTCTGGCC
AGTGAAAATCAGCCATACTCAATGTCCAAAATATAGTTGGCGTGCCCATT
TGCGTTATCGTGGCTTTTAATTTTTCCTTGACATCGCACCAATAGGCATT
CGTACCTGTTACATTCTTTGAGTATCTTTGTAGTTTTTTAATTACTACGT
AGTGATCATTATCCCTAACAAGATCTTGTAAATCTTCAATGCTCAAATTA
GCTTCACCTGGGTTttgcttgataaaaaaatttccttgacTAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039951XLOC_039951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063728-exon-scaffold_399-1491911889:125180..125475TCONS_00063728-exon-scaffold_399-1491911889:125180..125475Clytia hemisphaericaexon
TCONS_00063728-exon-scaffold_399-1510915933:125180..125475TCONS_00063728-exon-scaffold_399-1510915933:125180..125475Clytia hemisphaericaexon
TCONS_00063728-exon-scaffold_399-1575043694:125180..125475TCONS_00063728-exon-scaffold_399-1575043694:125180..125475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:125180..125475 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.01973	3.0681	2.93277	1.65256	1.85393	3.09554	3.96544	3.82396	2.0391	1.9204	1.16046	6.1815	2.03833	1.91915	0.212224	0.180217	0	0.23057	0	2.08552	3.8021	1.58551	0.48107	0.33791	5.35884	3.19341	0.405676	2.0595	2.07941	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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