TCONS_00063722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063722
Unique NameTCONS_00063722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063722 ID=TCONS_00063722|Name=TCONS_00063722|organism=Clytia hemisphaerica|type=transcript|length=311bp
GTTCGATCCATATTGATCCTGACGCACCTCCTTCGTATAATCCGAACAGG
GTCCATCCTAAAGGTGTCTTGGCTGCATAGGGTAGGGCAGATGCTCCCTT
TTGAACTTCTTTGGTAAGTAGAGCTGCTGGCACGTCGGCACCAATGAGGA
CTTGAAGTTGTCTCGATTCTACTTGAGGAAGATCGATGTCTCGAATGTAA
TCCCATTTAGGGTCATCTGTTACTGGAACTGTCTGTCCTGGAACCTTGAA
ATTGTCTTCATGTAGAGAGTAGACATTCTTCACTTGAGAGACGAAGCTTC
CATCTGTGGAG
Run BLAST on NCBI

protein sequence of TCONS_00063722-protein

>TCONS_00063722-protein ID=TCONS_00063722-protein|Name=TCONS_00063722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
STDGSFVSQVKNVYSLHEDNFKVPGQTVPVTDDPKWDYIRDIDLPQVESR
QLQVLIGADVPAALLTKEVQKGASALPYAAKTPLGWTLFGLYEGGASGSI
WIE
Run BLAST on NCBI

transcript from alignment at scaffold_399:6046..6356

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063722 ID=TCONS_00063722|Name=TCONS_00063722|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at scaffold_399:6046..6356 (Clytia hemisphaerica)
CTCCACAGATGGAAGCTTCGTCTCTCAAGTGAAGAATGTCTACTCTCTAC
ATGAAGACAATTTCAAGGTTCCAGGACAGACAGTTCCAGTAACAGATGAC
CCTAAATGGGATTACATTCGAGACATCGATCTTCCTCAAGTAGAATCGAG
ACAACTTCAAGTCCTCATTGGTGCCGACGTGCCAGCAGCTCTACTTACCA
AAGAAGTTCAAAAGGGAGCATCTGCCCTACCCTATGCAGCCAAGACACCT
TTAGGATGGACCCTGTTCGGATTATACGAAGGAGGTGCGTCAGGATCAAT
ATGGATCGAAC

Coding sequence (CDS) from alignment at scaffold_399:6046..6356

>TCONS_00063722 ID=TCONS_00063722|Name=TCONS_00063722|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_399:6046..6356 (Clytia hemisphaerica)
TCCACAGATGGAAGCTTCGTCTCTCAAGTGAAGAATGTCTACTCTCTACA
TGAAGACAATTTCAAGGTTCCAGGACAGACAGTTCCAGTAACAGATGACC
CTAAATGGGATTACATTCGAGACATCGATCTTCCTCAAGTAGAATCGAGA
CAACTTCAAGTCCTCATTGGTGCCGACGTGCCAGCAGCTCTACTTACCAA
AGAAGTTCAAAAGGGAGCATCTGCCCTACCCTATGCAGCCAAGACACCTT
TAGGATGGACCCTGTTCGGATTATACGAAGGAGGTGCGTCAGGATCAATA
TGGATCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039945XLOC_039945Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063722-proteinTCONS_00063722-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063722-exon-scaffold_399-1491911889:6046..6356TCONS_00063722-exon-scaffold_399-1491911889:6046..6356Clytia hemisphaericaexon
TCONS_00063722-exon-scaffold_399-1510915933:6046..6356TCONS_00063722-exon-scaffold_399-1510915933:6046..6356Clytia hemisphaericaexon
TCONS_00063722-exon-scaffold_399-1575043694:6046..6356TCONS_00063722-exon-scaffold_399-1575043694:6046..6356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:6046..6356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.347688	1.01715	1.18101	1.7952	0	0	0.447007	0	0	0	0	0.231558	0	0	0	0.423742	0	0.267525	0.739199	0	0	0.491907	0	0	0	0	0.476749	0	0.771812	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top